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485 Publikationen

2019 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2936900 OA
Wittler R (2019)
Alignment- and reference-free phylogenomics with colored de Bruijn graphs.
In: Proceedings of WABI 2019. Huber K, Gusfield D (Eds); LIPIcs, 143. Dagstuhl, Germany: Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik.
PUB | DOI | Download (ext.)
 
2019 | Preprint | PUB-ID: 2935604 OA
Wittler R (2019)
Alignment- and reference-free phylogenomics with colored de-Bruijn graphs.
arXiv:1905.04165.
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2019 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2932883
Dörr D, Stoye J (2019)
A Perspective on Comparative and Functional Genomics.
In: Bioinformatics and Phylogenetics. Warnow T (Ed); Computational Biology, 29. Cham: Springer : 361-372.
PUB | DOI
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932884
Oey H, Zakrzewski M, Gravermann K, Young ND, Korhonen PK, Gobert GN, Nawaratna S, Hasan S, Martínez DM, You H, Lavin M, Jones M, Ragan MA, Stoye J, Oleaga A, Emery AM, Webster B, Rollinson D, Gasser RB, McManus DP, Krause L (2019)
Whole-genome sequence of the bovine blood fluke Schistosoma bovis supports interspecific hybridization with S. haematobium.
PLOS Pathogens 15(1): e1007513.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919005 OA
Schulz T, Stoye J, Dörr D (2018)
GraphTeams. A method for discovering spatial gene clusters in Hi-C sequencing data.
BMC Genomics 19(Suppl. 5): 308.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919006 OA
Rubert D, Hoshino EA, Dias Vieira Braga M, Stoye J, Martinez FHV (2018)
Computing the family-free DCJ similarity.
BMC Bioinformatics 19(Suppl. 6): 152.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918481
Luhmann N, Chauve C, Stoye J, Wittler R (2018)
Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework.
IEEE/ACM Transactions on Computational Biology and Bioinformatics 15(6): 2094-2100.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2913921
Zekic T, Holley G, Stoye J (2018)
Pan-genome Storage and Analysis Techniques.
In: Comparative Genomics. Methods and Protocols. Setubal JC, Stadler P, Stoye J (Eds); Methods in Molecular Biology, 1704. New York: Springer Verlag: 29-53.
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2018 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2913922
Dörr D, Feijão P, Stoye J (2018)
Family-Free Genome Comparison.
In: Comparative Genomics: Methods and Protocols. Setubal JC, Stadler P, Stoye J (Eds); Methods in Molecular Biology, 1704. New York: Springer Verlag: 331-342.
PUB
 
2018 | Herausgeber*in Sammelwerk | Veröffentlicht | PUB-ID: 2913920
Setubal JC, Stadler P, Stoye J (Eds) (2018)
Comparative Genomics: Methods and Protocols. Methods in Molecular Biology; 1704.
New York: Springer Verlag.
PUB
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919012
Jaenicke S, Albaum S, Blumenkamp P, Linke B, Stoye J, Goesmann A (2018)
Flexible metagenome analysis using the MGX framework.
Microbiome 6: 76.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2908574
Luhmann N, Lafond M, Thévenin A, Ouangraoua A, Wittler R, Chauve C (2017)
The SCJ Small Parsimony Problem for Weighted Gene Adjacencies.
IEEE/ACM Transactions on Computational Biology and Bioinformatics 14.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912492
Luhmann N, Dörr D, Chauve C (2017)
Comparative scaffolding and gap filling of ancient bacterial genomes applied to two ancient Yersinia pestis genomes.
Microbial Genomics 3(9).
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909057 OA
Rubert D, Feijão P, Dias Vieira Braga M, Stoye J, Martinez FHV (2017)
Approximating the DCJ distance of balanced genomes in linear time.
Algorithms for Molecular Biology 12: 3.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2909409
Cunha L, Dantas S, Gagie T, Wittler R, Kowada L, Stoye J (2017)
Fast and Simple Jumbled Indexing for Binary Run-Length Encoded Strings.
In: Proceedings of CPM 2017. LIPIcs, 78. 19:1-19:9.
PUB | DOI
 
2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2907587
Holley G, Wittler R, Stoye J, Hach F (2017)
Dynamic Alignment-Free and Reference-Free Read Compression.
In: Proceedings of RECOMB 2017. Lecture Notes in Bioinformatics, 10229. 50-65.
PUB | DOI
 
2017 | Sammelwerksbeitrag | Im Druck | PUB-ID: 2913924
Anselmetti Y, Luhmann N, Bérard S, Tannier E, Chauve C (In Press)
Comparative Methods for Reconstructing Ancient Genome Organization.
In: Comparative Genomics. Setubal JC, Stadler P, Stoye J (Eds); Methods in Molecular Biology, Springer Verlag.
PUB
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909967
Dörr D, Kowada LAB, Soares de Araujo FE, Deshpande S, Dantas S, Moret BME, Stoye J (2017)
New Genome Similarity Measures based on Conserved Gene Adjacencies.
Journal of Computational Biology 24(6): 616-634.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901413 OA
Gorzolka K, Kölling J, Nattkemper TW, Niehaus K (2016)
Spatio-Temporal Metabolite Profiling of the Barley Germination Process by MALDI MS Imaging.
PLOS ONE 11(3): 0150208.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905930
Winter S, Jahn K, Wehner S, Kuchenbecker L, Marz M, Stoye J, Böcker S (2016)
Finding approximate gene clusters with GECKO 3.
Nucleic Acids Research 44(20): 9600-9610.
PUB | DOI | WoS | PubMed | Europe PMC
 

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