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157 Publikationen

2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2486204
Blom, J., Rückert, C., Niu, B., Wang, Q., & Borriss, R. (2012). The Complete Genome of Bacillus amyloliquefaciens subsp. plantarum CAU B946 Contains a Gene Cluster for Nonribosomal Synthesis of Iturin A. Journal of bacteriology, 194(7), 1845-1846. doi:10.1128/JB.06762-11
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2474002
Schneider, J., Rupp, O., Trost, E., Jaenicke, S., Passoth, V., Goesmann, A., Tauch, A., et al. (2012). Genome sequence of Wickerhamomyces anomalus DSM 6766 reveals genetic basis of biotechnologically important antimicrobial activities. FEMS Yeast Research, 12(3), 382-386. doi:10.1111/j.1567-1364.2012.00791.x
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2478526
Hackl, M., Jadhav, V., Jakobi, T., Rupp, O., Brinkrolf, K., Goesmann, A., Pühler, A., et al. (2012). Computational identification of microRNA gene loci and precursor microRNA sequences in CHO cell lines. Journal of Biotechnology, 158(3), 151-155. doi:10.1016/j.jbiotec.2012.01.019
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2405255
Persicke, M., Rückert, C., Plassmeier, J., Stutz, L., Kessler, N., Kalinowski, J., Goesmann, A., et al. (2012). MSEA: metabolite set enrichment analysis in the MeltDB metabolomics software platform: metabolic profiling of Corynebacterium glutamicum as an example. Metabolomics, 8(2), 310-322. doi:10.1007/s11306-011-0311-6
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2510984
Hilker, R., Sickinger, C., Pedersen, C. N. S., & Stoye, J. (2012). UniMoG - A unifying framework for genomic distance calculation and sorting based on DCJ. Bioinformatics, 28(19), 2509-2511. doi:10.1093/bioinformatics/bts440
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500959
Kahlke, T., Goesmann, A., Hjerde, E., Willassen, N. P., & Haugen, P. (2012). Unique core genomes of the bacterial family vibrionaceae: Insights into niche adaptation and speciation. BMC genomics, 13(1), 179. doi:10.1186/1471-2164-13-179
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500966
Hain, T., Ghai, R., Billion, A., Kuenne, C. T., Steinweg, C., Izar, B., Mohamed, W., et al. (2012). Comparative genomics and transcriptomics of lineages I, II, and III strains of Listeria monocytogenes. BMC Genomics, 13(1), 144. doi:10.1186/1471-2164-13-144
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2530487
Filippini, M., Qi, W., Jaenicke, S., Goesmann, A., Smits, T. H. M., & Bagheri, H. C. (2012). Genome Sequence of the Filamentous Bacterium Fibrisoma limi BUZ 3(T). Journal of Bacteriology, 194(16), 4445. doi:10.1128/JB.00869-12
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500937
Rezzonico, F., Braun-Kiewnick, A., Mann, R. A., Rodoni, B., Goesmann, A., Duffy, B., & Smits, T. H. M. (2012). Lipopolysaccharide biosynthesis genes discriminate between Rubus- and Spiraeoideae-infective genotypes of Erwinia amylovora. Molecular plant pathology, 13(8), 975-984. doi:10.1111/j.1364-3703.2012.00807.x
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501081
De Maayer, P., Chan, W. Y., Rezzonico, F., Bühlmann, A., Venter, S. N., Blom, J., Goesmann, A., et al. (2012). Complete genome sequence of clinical isolate Pantoea ananatis LMG 5342. Journal of Bacteriology, 194(6), 1615-1616. doi:10.1128/JB.06715-11
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2530885
Brinkrolf, K., Schneider, J., Knecht, M., Rückert, C., & Tauch, A. (2012). Draft Genome Sequence of Turicella otitidis ATCC 51513, Isolated from Middle Ear Fluid from a Child with Otitis Media. Journal of Bacteriology, 194(21), 5968-5969. doi:10.1128/JB.01412-12
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2517230
Jünemann, S., Prior, K., Szczepanowski, R., Harks, I., Ehmke, B., Goesmann, A., Stoye, J., et al. (2012). Bacterial Community Shift in Treated Periodontitis Patients Revealed by Ion Torrent 16S rRNA Gene Amplicon Sequencing. PLoS ONE, 7(8), e41606. doi:10.1371/journal.pone.0041606
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500946
Mann, R. A., Blom, J., Bühlmann, A., Plummer, K. M., Beer, S. V., Luck, J. E., Goesmann, A., et al. (2012). Comparative analysis of the Hrp pathogenicity island of Rubus- and Spiraeoideae-infecting Erwinia amylovora strains identifies the IT region as a remnant of an integrative conjugative element. Gene, 504(1), 6-12. doi:10.1016/j.gene.2012.05.002
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300063 OA
Albaum, S., Hahne, H., Otto, A., Haußmann, U., Becher, D., Poetsch, A., Goesmann, A., et al. (2011). A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application study. Proteome Science, 9(1), 30. doi:10.1186/1477-5956-9-30
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2451800 OA
Toepel, J., Albaum, S., Arvidsson, S., Goesmann, A., La Russa, M., Rogge, K., & Kruse, O. (2011). Construction and evaluation of a whole genome microarray of Chlamydomonas reinhardtii. BMC Genomics, 12(1), 579-589. doi:10.1186/1471-2164-12-579
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375634
Pothier, J. F., Vorhölter, F. - J., Blom, J., Goesmann, A., Pühler, A., Smits, T. H., & Duffy, B. (2011). The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis. FEMS Microbiology Letters, 323(1), 52-60. doi:10.1111/j.1574-6968.2011.02352.x
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354731
Wibberg, D., Blom, J., Jaenicke, S., Kollin, F., Rupp, O., Scharf, B., Schneiker-Bekel, S., et al. (2011). Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid. Journal of Biotechnology, 155(1), 50-62. doi:10.1016/j.jbiotec.2011.01.010
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2317371
Küberl, A., Schneider, J., Thallinger, G. G., Anderl, I., Wibberg, D., Hajek, T., Jaenicke, S., et al. (2011). High-quality genome sequence of Pichia pastoris CBS7435. Journal of Biotechnology, 154(4), 312-320. doi:10.1016/j.jbiotec.2011.04.014
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2396576
Becker, J., Hackel, M., Jakobi, T., Rupp, O., Schneider, J., Szczepanowski, R., Bekel, T., et al. (2011). Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Journal of Biotechnology, 156(3), 227-235. doi:10.1016/j.jbiotec.2011.09.014
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289576
Thomas, V., Bertelli, C., Collyn, F., Casson, N., Telenti, A., Goesmann, A., Croxatto, A., et al. (2011). Lausannevirus, a giant amoebal virus encoding histone doublets. Environmental Microbiology, 13(6), 1454-1466. doi:10.1111/j.1462-2920.2011.02446.x
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2411830
Ausec, L., Zakrzewski, M., Goesmann, A., Schlüter, A., & Mandic-Mulec, I. (2011). Bioinformatic analysis reveals high diversity of bacterial genes for laccase-like enzymes. PLoS ONE, 6(10), e25724. doi:10.1371/journal.pone.0025724
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326445
Schneider, J., Blom, J., Jaenicke, S., Linke, B., Brinkrolf, K., Neuweger, H., Tauch, A., et al. (2011). RAPYD - Rapid Annotation Platform for Yeast Data. Journal of Biotechnology, 155(1), 118-126. doi:10.1016/j.jbiotec.2010.10.076
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2307104
Smits, T. H. M., Rezzonico, F., Kamber, T., Blom, J., Goesmann, A., Ishimaru, C. A., Frey, J. E., et al. (2011). Metabolic Versatility and Antibacterial Metabolite Biosynthesis Are Distinguishing Genomic Features of the Fire Blight Antagonist Pantoea vagans C9-1. PLoS ONE, 6(7), e22247. doi:10.1371/journal.pone.0022247
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2447730
Gonzalez, J. M., Pinhassi, J., Fernández-Gómez, B., Coll-Llado, M., Gonzalez-Velazquez, M., Puigbo, P., Jaenicke, S., et al. (2011). Genomics of the proteorhodopsin-containing marine flavobacterium Dokdonia sp. MED134. Applied and Environmental Microbiology, 77(24), 8676-8686. doi:10.1128/aem.06152-11
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326455
Krol, E., Blom, J., Winnebald, J., Berhoerster, A., Barnett, M. J., Goesmann, A., Baumbach, J., et al. (2011). RhizoRegNet-A database of rhizobial transcription factors and regulatory networks. Journal of Biotechnology, 155(1), 127-134. doi:10.1016/j.jbiotec.2010.11.004
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2397780
Doppmeier, D., Stracke, R., Lutter, P., Goesmann, A., Niehaus, K., & Weisshaar, B. (2011). Using the GUS Reporter Gene for Quantitative Studies of Promotor Activity in A.thaliana Seedlings. Presented at the ICSB 2011 Heidelberg/Mannheim, Heidelberg/Mannheim, Germany.
PUB
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2290032
Joseph, B., Schwarz, R. F., Linke, B., Blom, J., Becker, A., Claus, H., Goesmann, A., et al. (2011). Virulence Evolution of the Human Pathogen Neisseria meningitidis by Recombination in the Core and Accessory Genome. PLoS ONE, 6(4), e18441. doi:10.1371/journal.pone.0018441
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093389
Schoen, C., Weber-Lehmann, J., Blom, J., Joseph, B., Goesmann, A., Strittmatter, A., & Frosch, M. (2011). Whole-Genome Sequence of the Transformable Neisseria meningitidis Serogroup A Strain WUE2594. Journal of Bacteriology, 193(8), 2064-2065. doi:10.1128/JB.00084-11
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289902
De Gregoris, T. B., Rupp, O., Klages, S., Knaust, F., Bekel, T., Kube, M., Burgess, J. G., et al. (2011). Deep sequencing of naupliar-, cyprid- and adult-specific normalised Expressed Sequence Tag (EST) libraries of the acorn barnacle Balanus amphitrite. Biofouling, 27(4), 367-374. doi:10.1080/08927014.2011.577211
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289952
Blom, J., Jakobi, T., Doppmeier, D., Jaenicke, S., Kalinowski, J., Stoye, J., & Goesmann, A. (2011). Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming. Bioinformatics, 27(10), 1351-1358. doi:10.1093/bioinformatics/btr151
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Im Druck | PUB-ID: 2017892
Schneiker-Bekel, S., Wibberg, D., Bekel, T., Blom, J., Linke, B., Neuweger, H., Stiens, M., et al. (In Press). The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome. Journal of Biotechnology, 155(1), 20-33. doi:10.1016/j.jbiotec.2010.12.018
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003276
Jaenicke, S., Ander, C., Bekel, T., Bisdorf, R., Dröge, M., Gartemann, K. - H., Jünemann, S., et al. (2011). Comparative and Joint Analysis of Two Metagenomic Datasets from a Biogas Fermenter Obtained by 454-Pyrosequencing. PLoS ONE, 6(1), e14519. doi:10.1371/journal.pone.0014519
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2087955
Hackl, M., Jakobi, T., Blom, J., Doppmeier, D., Brinkrolf, K., Szczepanowski, R., Bernhart, S. H., et al. (2011). Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering. Journal of Biotechnology, 153(1-2), 62-75. doi:10.1016/j.jbiotec.2011.02.011
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2036058
Margaret, I., Becker, A., Blom, J., Bonilla, I., Goesmann, A., Göttfert, M., Lloret, J., et al. (2011). Symbiotic properties and first analyses of the genomic sequence of the fast growing model strain Sinorhizobium fredii HH103 nodulating soybean. Journal of Biotechnology, 155(1), 11-19. doi:10.1016/j.jbiotec.2011.03.016
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093578
Linke, B., Giegerich, R., & Goesmann, A. (2011). Conveyor: a workflow engine for bioinformatic analyses. Bioinformatics, 27(7), 903-911. doi:10.1093/bioinformatics/btr040
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093398
Brankatschk, K., Blom, J., Goesmann, A., Smits, T. H. M., & Duffy, B. (2011). Genome of a European Fresh-Vegetable Food Safety Outbreak Strain of Salmonella enterica subsp enterica Serovar Weltevreden. Journal of Bacteriology, 193(8), 2066. doi:10.1128/JB.00123-11
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929692
Schneider, J., Vorhölter, F. - J., Trost, E., Blom, J., Musa, Y. R., Neuweger, H., Niehaus, K., et al. (2010). CARMEN - Comparative Analysis and in silico Reconstruction of organism-specific MEtabolic Networks. Genetics and Molecular Research, 9(3), 1660-1672. doi:10.4238/vol9-3gmr901
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1966439
Trost, E., Ott, L., Schneider, J., Schröder, J., Jaenicke, S., Goesmann, A., Husemann, P., et al. (2010). The complete genome sequence of Corynebacterium pseudotuberculosis FRC41 isolated from a 12-year-old girl with necrotizing lymphadenitis reveals insights into gene-regulatory networks contributing to virulence. BMC Genomics, 11(1), 728. doi:10.1186/1471-2164-11-728
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1795508
Bertelli, C., Collyn, F., Croxatto, A., Rückert, C., Polkinghorne, A., Kebbi-Beghdadi, C., Goesmann, A., et al. (2010). The Waddlia Genome: A Window into Chlamydial Biology. PLOS ONE, 5(5), e10890. doi:10.1371/journal.pone.0010890
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1795628
Smits, T. H. M., Rezzonico, F., Pelludat, C., Goesmann, A., Frey, J. E., & Duffy, B. (2010). Genomic and phenotypic characterization of a nonpigmented variant of Pantoea vagans biocontrol strain C9-1 lacking the 530-kb megaplasmid pPag3. FEMS MICROBIOLOGY LETTERS, 308(1), 48-54. doi:10.1111/j.1574-6968.2010.01994.x
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785275 OA
Trost, E., Götker, S., Schneider, J., Schneiker-Bekel, S., Szczepanowski, R., Tilker, A., Viehöver, P., et al. (2010). Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortion. BMC Genomics, 11(1), 91. doi:10.1186/1471-2164-11-91
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785504 OA
Yang, I., John, U., Beszteri, S., Glöckner, G., Krock, B., Goesmann, A., & Cembella, A. D. (2010). Comparative gene expression in toxic versus non-toxic strains of the marine dinoflagellate Alexandrium minutum. BMC Genomics, 11(1), 248. doi:10.1186/1471-2164-11-248
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1796445
Smits, T. H. M., Rezzonico, F., Kamber, T., Blom, J., Goesmann, A., Frey, J. E., & Duffy, B. (2010). Complete Genome Sequence of the Fire Blight Pathogen Erwinia amylovora CFBP 1430 and Comparison to Other Erwinia spp. MOLECULAR PLANT-MICROBE INTERACTIONS, 23(4), 384-393. doi:10.1094/MPMI-23-4-0384
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 1894907
Mittard-Runte, V., Bekel, T., Blom, J., Dondrup, M., Henckel, K., Jaenicke, S., Krause, L., et al. (2010). Practical Guide: Genomic Techniques and How to Apply Them to Marine Questions. In J. M. Cock, K. Tessmar-Raible, C. Boyen, & F. Viard (Eds.), Introduction to Marine Genomics (Advances in Marine Genomics) (Vol. 1, pp. 315-396). Netherlands: Springer Netherlands. doi:10.1007/978-90-481-8639-6_9
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1796644 OA
Smits, T. H. M., Jaenicke, S., Rezzonico, F., Kamber, T., Goesmann, A., Frey, J. E., & Duffy, B. (2010). Complete genome sequence of the fire blight pathogen Erwinia pyrifoliae DSM 12163(T) and comparative genomic insights into plant pathogenicity. BMC Genomics, 11(1), 2. doi:10.1186/1471-2164-11-2
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785579 OA
Farnbacher, M., Jahns, T., Willrodt, D., Daniel, R., Haas, R., Goesmann, A., Kurtz, S., et al. (2010). Sequencing, annotation, and comparative genome analysis of the gerbil-adapted Helicobacter pylori strain B8. BMC Genomics, 11(1), 335. doi:10.1186/1471-2164-11-335
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588692
Steinweg, C., Kuenne, C. T., Billion, A., Mraheil, M. A., Domann, E., Ghai, R., Barbuddhe, S. B., et al. (2010). Complete Genome Sequence of Listeria seeligeri, a Nonpathogenic Member of the Genus Listeria. Journal of Bacteriology, 192(5), 1473-1474. doi:10.1128/JB.01415-09
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1794039
Kuenne, C., Voget, S., Pischimarov, J., Oehm, S., Goesmann, A., Daniel, R., Hain, T., et al. (2010). Comparative Analysis of Plasmids in the Genus Listeria. PLOS ONE, 5(9), e12511. doi:10.1371/journal.pone.0012511
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1894319 OA
Henckel, K., Küster, H., Stutz, L., & Goesmann, A. (2010). MediPlEx - a tool to combine in silico and experimental gene expression profiles of the model legume Medicago truncatula. BMC Research Notes, 3(1), 262. doi:10.1186/1756-0500-3-262
PUB | PDF | DOI | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1968262
Smits, T. H. M., Rezzonico, F., Kamber, T., Goesmann, A., Ishimaru, C. A., Stockwell, V. O., Frey, J. E., et al. (2010). Genome Sequence of the Biocontrol Agent Pantoea vagans Strain C9-1. Journal of Bacteriology, 192(24), 6486-6487. doi:10.1128/JB.01122-10
PUB | DOI | WoS | PubMed | Europe PMC
 

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