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157 Publikationen

2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2474002
J. Schneider, O. Rupp, E. Trost, S. Jaenicke, V. Passoth, A. Goesmann, A. Tauch, and K. Brinkrolf, “Genome sequence of Wickerhamomyces anomalus DSM 6766 reveals genetic basis of biotechnologically important antimicrobial activities”, FEMS Yeast Research, 2012, 12, 382-386.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2486204
J. Blom, C. Rückert, B. Niu, Q. Wang, and R. Borriss, “The Complete Genome of Bacillus amyloliquefaciens subsp. plantarum CAU B946 Contains a Gene Cluster for Nonribosomal Synthesis of Iturin A”, Journal of bacteriology, 2012, 194, 1845-1846.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2478526
M. Hackl, V. Jadhav, T. Jakobi, O. Rupp, K. Brinkrolf, A. Goesmann, A. Pühler, T. Noll, N. Borth, and J. Grillari, “Computational identification of microRNA gene loci and precursor microRNA sequences in CHO cell lines”, Journal of Biotechnology, 2012, 158, 151-155.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2405255
M. Persicke, C. Rückert, J. Plassmeier, L. Stutz, N. Kessler, J. Kalinowski, A. Goesmann, and H. Neuweger, “MSEA: metabolite set enrichment analysis in the MeltDB metabolomics software platform: metabolic profiling of Corynebacterium glutamicum as an example”, Metabolomics, 2012, 8, 310-322.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2510984
R. Hilker, C. Sickinger, C. N. S. Pedersen, and J. Stoye, “UniMoG - A unifying framework for genomic distance calculation and sorting based on DCJ”, Bioinformatics, 2012, 28, 2509-2511.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500959
T. Kahlke, A. Goesmann, E. Hjerde, N. P. Willassen, and P. Haugen, “Unique core genomes of the bacterial family vibrionaceae: Insights into niche adaptation and speciation”, BMC genomics, 2012, 13, 179.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500966
T. Hain, R. Ghai, A. Billion, C. T. Kuenne, C. Steinweg, B. Izar, W. Mohamed, M. Mraheil, E. Domann, S. Schaffrath, et al., “Comparative genomics and transcriptomics of lineages I, II, and III strains of Listeria monocytogenes”, BMC Genomics, 2012, 13, 144.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2530487
M. Filippini, W. Qi, S. Jaenicke, A. Goesmann, T. H. M. Smits, and H. C. Bagheri, “Genome Sequence of the Filamentous Bacterium Fibrisoma limi BUZ 3(T)”, Journal of Bacteriology, 2012, 194, 4445.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500937
F. Rezzonico, A. Braun-Kiewnick, R. A. Mann, B. Rodoni, A. Goesmann, B. Duffy, and T. H. M. Smits, “Lipopolysaccharide biosynthesis genes discriminate between Rubus- and Spiraeoideae-infective genotypes of Erwinia amylovora”, Molecular plant pathology, 2012, 13, 975-984.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501081
P. De Maayer, W. Y. Chan, F. Rezzonico, A. Bühlmann, S. N. Venter, J. Blom, A. Goesmann, J. E. Frey, T. H. M. Smits, B. Duffy, et al., “Complete genome sequence of clinical isolate Pantoea ananatis LMG 5342”, Journal of Bacteriology, 2012, 194, 1615-1616.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2530885
K. Brinkrolf, J. Schneider, M. Knecht, C. Rückert, and A. Tauch, “Draft Genome Sequence of Turicella otitidis ATCC 51513, Isolated from Middle Ear Fluid from a Child with Otitis Media”, Journal of Bacteriology, 2012, 194, 5968-5969.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2517230
S. Jünemann, K. Prior, R. Szczepanowski, I. Harks, B. Ehmke, A. Goesmann, J. Stoye, and D. Harmsen, “Bacterial Community Shift in Treated Periodontitis Patients Revealed by Ion Torrent 16S rRNA Gene Amplicon Sequencing”, PLoS ONE, 2012, 7, e41606.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500946
R. A. Mann, J. Blom, A. Bühlmann, K. M. Plummer, S. V. Beer, J. E. Luck, A. Goesmann, J. E. Frey, B. C. Rodoni, B. Duffy, et al., “Comparative analysis of the Hrp pathogenicity island of Rubus- and Spiraeoideae-infecting Erwinia amylovora strains identifies the IT region as a remnant of an integrative conjugative element”, Gene, 2012, 504, 6-12.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300063 OA
S. Albaum, H. Hahne, A. Otto, U. Haußmann, D. Becher, A. Poetsch, A. Goesmann, and T. W. Nattkemper, “A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application study”, Proteome Science, 2011, 9, 30.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2451800 OA
J. Toepel, S. Albaum, S. Arvidsson, A. Goesmann, M. La Russa, K. Rogge, and O. Kruse, “Construction and evaluation of a whole genome microarray of Chlamydomonas reinhardtii”, BMC Genomics, 2011, 12, 579-589.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375634
J. F. Pothier, F. - J. Vorhölter, J. Blom, A. Goesmann, A. Pühler, T. H. Smits, and B. Duffy, “The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis”, FEMS Microbiology Letters, 2011, 323, 52-60.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354731
D. Wibberg, J. Blom, S. Jaenicke, F. Kollin, O. Rupp, B. Scharf, S. Schneiker-Bekel, R. Szczepanowski, A. Goesmann, J. C. Setubal, et al., “Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid”, Journal of Biotechnology, 2011, 155, 50-62.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2317371
A. Küberl, J. Schneider, G. G. Thallinger, I. Anderl, D. Wibberg, T. Hajek, S. Jaenicke, K. Brinkrolf, A. Goesmann, R. Szczepanowski, et al., “High-quality genome sequence of Pichia pastoris CBS7435”, Journal of Biotechnology, 2011, 154, 312-320.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2396576
J. Becker, M. Hackel, T. Jakobi, O. Rupp, J. Schneider, R. Szczepanowski, T. Bekel, N. Borth, A. Goesmann, J. Grillari, et al., “Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing”, Journal of Biotechnology, 2011, 156, 227-235.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289576
V. Thomas, C. Bertelli, F. Collyn, N. Casson, A. Telenti, A. Goesmann, A. Croxatto, and G. Greub, “Lausannevirus, a giant amoebal virus encoding histone doublets”, Environmental Microbiology, 2011, 13, 1454-1466.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2411830
L. Ausec, M. Zakrzewski, A. Goesmann, A. Schlüter, and I. Mandic-Mulec, “Bioinformatic analysis reveals high diversity of bacterial genes for laccase-like enzymes”, PLoS ONE, 2011, 6, : e25724.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326445
J. Schneider, J. Blom, S. Jaenicke, B. Linke, K. Brinkrolf, H. Neuweger, A. Tauch, and A. Goesmann, “RAPYD - Rapid Annotation Platform for Yeast Data”, Journal of Biotechnology, 2011, 155, 118-126.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2307104
T. H. M. Smits, F. Rezzonico, T. Kamber, J. Blom, A. Goesmann, C. A. Ishimaru, J. E. Frey, V. O. Stockwell, and B. Duffy, “Metabolic Versatility and Antibacterial Metabolite Biosynthesis Are Distinguishing Genomic Features of the Fire Blight Antagonist Pantoea vagans C9-1”, PLoS ONE, 2011, 6, e22247.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2447730
J. M. Gonzalez, J. Pinhassi, B. Fernández-Gómez, M. Coll-Llado, M. Gonzalez-Velazquez, P. Puigbo, S. Jaenicke, L. Gomez-Consarnau, A. Fernandez-Guerra, A. Goesmann, et al., “Genomics of the proteorhodopsin-containing marine flavobacterium Dokdonia sp. MED134”, Applied and Environmental Microbiology, 2011, 77, 8676-8686.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326455
E. Krol, J. Blom, J. Winnebald, A. Berhoerster, M. J. Barnett, A. Goesmann, J. Baumbach, and A. Becker, “RhizoRegNet-A database of rhizobial transcription factors and regulatory networks”, Journal of Biotechnology, 2011, 155, 127-134.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2397780
D. Doppmeier, R. Stracke, P. Lutter, A. Goesmann, K. Niehaus, and B. Weisshaar, 2011, p. 218.
PUB
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2290032
B. Joseph, R. F. Schwarz, B. Linke, J. Blom, A. Becker, H. Claus, A. Goesmann, M. Frosch, T. Mueller, U. Vogel, et al., “Virulence Evolution of the Human Pathogen Neisseria meningitidis by Recombination in the Core and Accessory Genome”, PLoS ONE, 2011, 6, e18441.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093389
C. Schoen, J. Weber-Lehmann, J. Blom, B. Joseph, A. Goesmann, A. Strittmatter, and M. Frosch, “Whole-Genome Sequence of the Transformable Neisseria meningitidis Serogroup A Strain WUE2594”, Journal of Bacteriology, 2011, 193, 2064-2065.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289902
T. B. De Gregoris, O. Rupp, S. Klages, F. Knaust, T. Bekel, M. Kube, J. G. Burgess, M. I. Arnone, A. Goesmann, R. Reinhardt, et al., “Deep sequencing of naupliar-, cyprid- and adult-specific normalised Expressed Sequence Tag (EST) libraries of the acorn barnacle Balanus amphitrite”, Biofouling, 2011, 27, 367-374.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289952
J. Blom, T. Jakobi, D. Doppmeier, S. Jaenicke, J. Kalinowski, J. Stoye, and A. Goesmann, “Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming”, Bioinformatics, 2011, 27, 1351-1358.
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2011 | Zeitschriftenaufsatz | Im Druck | PUB-ID: 2017892
S. Schneiker-Bekel, D. Wibberg, T. Bekel, J. Blom, B. Linke, H. Neuweger, M. Stiens, F. - J. Vorhölter, S. Weidner, A. Goesmann, et al., “The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome”, Journal of Biotechnology, In Press, 155, 20-33.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003276
S. Jaenicke, C. Ander, T. Bekel, R. Bisdorf, M. Dröge, K. - H. Gartemann, S. Jünemann, O. Kaiser, L. Krause, F. Tille, et al., “Comparative and Joint Analysis of Two Metagenomic Datasets from a Biogas Fermenter Obtained by 454-Pyrosequencing”, PLoS ONE, 2011, 6, e14519.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2036058
I. Margaret, A. Becker, J. Blom, I. Bonilla, A. Goesmann, M. Göttfert, J. Lloret, V. Mittard-Runte, C. Rückert, J. - E. Ruiz-Sainz, et al., “Symbiotic properties and first analyses of the genomic sequence of the fast growing model strain Sinorhizobium fredii HH103 nodulating soybean”, Journal of Biotechnology, 2011, 155, 11-19.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2087955
M. Hackl, T. Jakobi, J. Blom, D. Doppmeier, K. Brinkrolf, R. Szczepanowski, S. H. Bernhart, C. Höner zu Siederdissen, J. A. H. Bort, M. Wieser, et al., “Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering”, Journal of Biotechnology, 2011, 153, 62-75.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093578
B. Linke, R. Giegerich, and A. Goesmann, “Conveyor: a workflow engine for bioinformatic analyses”, Bioinformatics, 2011, 27, 903-911.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093398
K. Brankatschk, J. Blom, A. Goesmann, T. H. M. Smits, and B. Duffy, “Genome of a European Fresh-Vegetable Food Safety Outbreak Strain of Salmonella enterica subsp enterica Serovar Weltevreden”, Journal of Bacteriology, 2011, 193, 2066.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929692
J. Schneider, F. - J. Vorhölter, E. Trost, J. Blom, Y. R. Musa, H. Neuweger, K. Niehaus, S. Schatschneider, A. Tauch, and A. Goesmann, “CARMEN - Comparative Analysis and in silico Reconstruction of organism-specific MEtabolic Networks”, Genetics and Molecular Research, 2010, 9, 1660-1672.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1966439
E. Trost, L. Ott, J. Schneider, J. Schröder, S. Jaenicke, A. Goesmann, P. Husemann, J. Stoye, F. Alves Dorella, F. Souza Rocha, et al., “The complete genome sequence of Corynebacterium pseudotuberculosis FRC41 isolated from a 12-year-old girl with necrotizing lymphadenitis reveals insights into gene-regulatory networks contributing to virulence”, BMC Genomics, 2010, 11, : 728.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1795508
C. Bertelli, F. Collyn, A. Croxatto, C. Rückert, A. Polkinghorne, C. Kebbi-Beghdadi, A. Goesmann, L. Vaughan, and G. Greub, “The Waddlia Genome: A Window into Chlamydial Biology”, PLOS ONE, 2010, 5, e10890.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1795628
T. H. M. Smits, F. Rezzonico, C. Pelludat, A. Goesmann, J. E. Frey, and B. Duffy, “Genomic and phenotypic characterization of a nonpigmented variant of Pantoea vagans biocontrol strain C9-1 lacking the 530-kb megaplasmid pPag3”, FEMS MICROBIOLOGY LETTERS, 2010, 308, 48-54.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785275 OA
E. Trost, S. Götker, J. Schneider, S. Schneiker-Bekel, R. Szczepanowski, A. Tilker, P. Viehöver, W. Arnold, T. Bekel, J. Blom, et al., “Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortion”, BMC Genomics, 2010, 11, : 91.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785504 OA
I. Yang, U. John, S. Beszteri, G. Glöckner, B. Krock, A. Goesmann, and A. D. Cembella, “Comparative gene expression in toxic versus non-toxic strains of the marine dinoflagellate Alexandrium minutum”, BMC Genomics, 2010, 11, 248.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1796445
T. H. M. Smits, F. Rezzonico, T. Kamber, J. Blom, A. Goesmann, J. E. Frey, and B. Duffy, “Complete Genome Sequence of the Fire Blight Pathogen Erwinia amylovora CFBP 1430 and Comparison to Other Erwinia spp.”, MOLECULAR PLANT-MICROBE INTERACTIONS, 2010, 23, 384-393.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 1894907
V. Mittard-Runte, T. Bekel, J. Blom, M. Dondrup, K. Henckel, S. Jaenicke, L. Krause, B. Linke, H. Neuweger, S. Schneiker-Bekel, et al., in Introduction to Marine Genomics (Advances in Marine Genomics) (Eds.: J.M. Cock, K. Tessmar-Raible, C. Boyen, F. Viard), Springer Netherlands, Netherlands, 2010, p. 315-396.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1796644 OA
T. H. M. Smits, S. Jaenicke, F. Rezzonico, T. Kamber, A. Goesmann, J. E. Frey, and B. Duffy, “Complete genome sequence of the fire blight pathogen Erwinia pyrifoliae DSM 12163(T) and comparative genomic insights into plant pathogenicity”, BMC Genomics, 2010, 11, 2.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785579 OA
M. Farnbacher, T. Jahns, D. Willrodt, R. Daniel, R. Haas, A. Goesmann, S. Kurtz, and G. Rieder, “Sequencing, annotation, and comparative genome analysis of the gerbil-adapted Helicobacter pylori strain B8”, BMC Genomics, 2010, 11, 335.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588692
C. Steinweg, C. T. Kuenne, A. Billion, M. A. Mraheil, E. Domann, R. Ghai, S. B. Barbuddhe, U. Kaerst, A. Goesmann, A. Pühler, et al., “Complete Genome Sequence of Listeria seeligeri, a Nonpathogenic Member of the Genus Listeria”, Journal of Bacteriology, 2010, 192, 1473-1474.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1794039
C. Kuenne, S. Voget, J. Pischimarov, S. Oehm, A. Goesmann, R. Daniel, T. Hain, and T. Chakraborty, “Comparative Analysis of Plasmids in the Genus Listeria”, PLOS ONE, 2010, 5, e12511.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1894319 OA
K. Henckel, H. Küster, L. Stutz, and A. Goesmann, “MediPlEx - a tool to combine in silico and experimental gene expression profiles of the model legume Medicago truncatula.”, BMC Research Notes, 2010, 3, 262.
PUB | PDF | DOI | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1968262
T. H. M. Smits, F. Rezzonico, T. Kamber, A. Goesmann, C. A. Ishimaru, V. O. Stockwell, J. E. Frey, and B. Duffy, “Genome Sequence of the Biocontrol Agent Pantoea vagans Strain C9-1”, Journal of Bacteriology, 2010, 192, 6486-6487.
PUB | DOI | WoS | PubMed | Europe PMC
 

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