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157 Publikationen

2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1990186
N. Gehlenborg, S. I. O'Donoghue, N. S. Baliga, A. Goesmann, M. A. Hibbs, H. Kitano, O. Kohlbacher, H. Neuweger, R. Schneider, D. Tenenbaum, et al., “Visualization of omics data for systems biology”, Nat Methods, 2010, 7, S56-S68.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1930110
B. Joseph, S. Schneiker-Bekel, A. Schramm-Glueck, J. Blom, H. Claus, B. Linke, R. F. Schwarz, A. Becker, A. Goesmann, M. Frosch, et al., “Comparative Genome Biology of a Serogroup B Carriage and Disease Strain Supports a Polygenic Nature of Meningococcal Virulence”, JOURNAL OF BACTERIOLOGY, 2010, 192, 5363-5377.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2397394
A. Goesmann, J. Schneider, E. Trost, and A. Tauch, “Entschlüsselung mikrobieller Genomsequenzen im Schnellverfahren”, BIOspektrum, 2009, 15, 279-281.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783022 OA
J. Krawczyk, A. Goesmann, R. Nolte, M. Werber, and B. Weisshaar, “Trace2PS and FSA2PS: two software toolkits for converting trace and fsa files to PostScript format”, Source Code for Biology and Medicine, 2009, 4, 4.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783813 OA
H. Neuweger, M. Persicke, S. Albaum, T. Bekel, M. Dondrup, A. T. Hüser, J. Winnebald, J. Schneider, J. Kalinowski, and A. Goesmann, “Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example”, BMC Systems Biology, 2009, 3, : 82.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783187 OA
J. Blom, S. Albaum, D. Doppmeier, A. Pühler, F. - J. Vorhölter, M. Zakrzewski, and A. Goesmann, “EDGAR: a software framework for the comparative analysis of prokaryotic genomes”, BMC Bioinformatics, 2009, 10, : 154.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635300 OA
K. Henckel, K. J. Runte, T. Bekel, M. Dondrup, T. Jakobi, H. Küster, and A. Goesmann, “TRUNCATULIX - a data warehouse for the legume community”, BMC Plant Biology, 2009, 9, 19.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634097
A. W. Strittmatter, H. Liesegang, R. Rabus, I. Decker, J. Amann, S. Andres, A. Henne, W. F. Fricke, R. Martinez-Arias, D. Bartels, et al., “Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide”, ENVIRONMENTAL MICROBIOLOGY, 2009, 11, 1038-1055.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634467
A. Becker, M. J. Barnett, D. Capela, M. Dondrup, P. - B. Kamp, E. Krol, B. Linke, S. Rüberg, K. Runte, B. K. Schroeder, et al., “A portal for rhizobial genomes: RhizoGATE integrates a Sinorhizobium meliloti genome annotation update with postgenome data”, JOURNAL OF BIOTECHNOLOGY, 2009, 140, 45-50.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635314 OA
N. N. Diaz, L. Krause, A. Goesmann, K. Niehaus, and T. W. Nattkemper, “TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach”, BMC Bioinformatics, 2009, 10, 56.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635321 OA
M. Dondrup, S. Albaum, T. Griebel, K. Henckel, S. Jünemann, T. Kahlke, C. K. Kleindt, H. Kuester, B. Linke, D. Mertens, et al., “EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data”, BMC Bioinformatics, 2009, 10, : 50.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589098 OA
W. Gerlach, S. Jünemann, F. Tille, A. Goesmann, and J. Stoye, “WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads”, BMC Bioinformatics, 2009, 10, 430.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531
S. Albaum, H. Neuweger, B. Fraenzel, S. Lange, D. Mertens, C. Troetschel, D. Wolters, J. Kalinowski, T. W. Nattkemper, and A. Goesmann, “Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments”, Bioinformatics, 2009, 25, 3128-3134.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589936
U. Wegmann, K. Overweg, N. Horn, A. Goesmann, A. Narbad, M. J. Gasson, and C. Shearman, “Complete Genome Sequence of Lactobacillus johnsonii FI9785, a Competitive Exclusion Agent against Pathogens in Poultry”, JOURNAL OF BACTERIOLOGY, 2009, 191, 7142-7143.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634447
T. Bekel, K. Henckel, H. Küster, F. Meyer, V. Mittard-Runte, H. Neuweger, D. Paarmann, O. Rupp, M. Zakrzewski, A. Pühler, et al., “The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies”, Journal of Biotechnology, 2009, 140, 3-12.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634461
M. Dondrup, A. T. Hueser, D. Mertens, and A. Goesmann, “An evaluation framework for statistical tests on microarray data”, JOURNAL OF BIOTECHNOLOGY, 2009, 140, 18-26.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636699
H. Neuweger, S. Albaum, M. Dondrup, M. Persicke, T. Watt, K. Niehaus, J. Stoye, and A. Goesmann, “MeltDB: a software platform for the analysis and integration of metabolomics experiment data”, Bioinformatics, 2008, 24, 2726-2732.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783292 OA
R. Gross, C. A. Guzman, M. Sebaihia, V. A. P. Martins dos Santos, D. H. Pieper, R. Koebnik, M. Lechner, D. Bartels, J. Buhrmester, J. V. Choudhuri, et al., “The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae”, BMC Genomics, 2008, 9, 449.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592024
F. - J. Vorhölter, S. Schneiker-Bekel, A. Goesmann, L. Krause, T. Bekel, O. Kaiser, B. Linke, T. Patschkowski, C. Rückert, J. Schmid, et al., “The genome of Xanthomonas campestris pv. campestris B 100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis”, Journal of Biotechnology, 2008, 134, 33-45.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592257
C. Schoen, J. Blom, H. Claus, A. Schramm-Glueck, P. Brandt, T. Mueller, A. Goesmann, B. Joseph, S. Konietzny, O. Kurzai, et al., “Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis”, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105, 3473-3478.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586009
L. Krause, N. N. Diaz, R. A. Edwards, K. - H. Gartemann, H. Krömeke, H. Neuweger, A. Pühler, K. J. Runte, A. Schlüter, J. Stoye, et al., “Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor”, JOURNAL OF BIOTECHNOLOGY, 2008, 136, 91-101.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585956
M. Stiens, A. Becker, T. Bekel, V. Gödde, A. Goesmann, K. Niehaus, S. Schneiker-Bekel, W. Selbitschka, S. Weidner, A. Schlüter, et al., “Comparative genomic hybridisation and ultrafast pyrosequencing revealed remarkable differences between the Sinorhizobium meliloti genomes of the model strain Rm1021 and the field isolate SM11”, Journal of Biotechnology, 2008, 136, 31-37.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585987
A. Schlüter, T. Bekel, N. N. Diaz, M. Dondrup, R. Eichenlaub, K. - H. Gartemann, I. Krahn, L. Krause, H. Kroemeke, O. Kruse, et al., “The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology”, Journal of Biotechnology, 2008, 136, 77-90.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585918
A. Tauch, E. Trost, A. Tilker, U. Ludewig, S. Schneiker-Bekel, A. Goesmann, W. Arnold, T. Bekel, K. Brinkrolf, I. Brune, et al., “The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencing”, Journal of Biotechnology, 2008, 136, 11-21.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586785 OA
S. Oehm, D. Gilbert, A. Tauch, J. Stoye, and A. Goesmann, “Comparative Pathway Analyzer - a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms”, NUCLEIC ACIDS RESEARCH, 2008, 36, W433-W437.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585939
A. Tauch, J. Schneider, R. Szczepanowski, A. Tilker, P. Viehöver, K. - H. Gartemann, W. Arnold, J. Blom, K. Brinkrolf, I. Brune, et al., “Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids”, Journal of Biotechnology, 2008, 136, 22-30.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783364 OA
L. Krause, N. N. Diaz, A. Goesmann, S. Kelley, T. W. Nattkemper, F. Rohwer, R. A. Edwards, and J. Stoye, “Phylogenetic classification of short environmental DNA fragments”, Nucleic Acids Research, 2008, 36, 2230-2239.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018381
S. Albaum, H. Neuweger, S. Lange, D. Mertens, K. Runte, J. Kalinowski, T. W. Nattkemper, and A. Goesmann, in HUPO 7th Annual World Congress, 2008.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1990198
E. Strauch, J. A. Hammerl, A. Konietzny, S. Schneiker-Bekel, W. Arnold, A. Goesmann, A. Pühler, and L. Beutin, “Bacteriophage 2851 is a prototype phage for dissemination of the Shiga toxin variant gene 2c in Escherichia coli O157:H7”, Infection and Immunity, 2008, 76, 5466-5477.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631047
C. Meisinger-Henschel, M. Schmidt, S. Lukassen, B. Linke, L. Krause, S. Konietzny, A. Goesmann, P. Howley, P. Chaplin, M. Suter, et al., “Genomic sequence of chorioallantois vaccinia virus Ankara, the ancestor of modified vaccinia virus Ankara”, JOURNAL OF GENERAL VIROLOGY, 2007, 88, 3249-3259.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783754 OA
H. Neuweger, J. Baumbach, S. Albaum, T. Bekel, M. Dondrup, A. T. Hüser, J. Kalinowski, S. Oehm, A. Pühler, S. Rahmann, et al., “CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data”, BMC Systems Biology, 2007, 1, 55.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631327
S. Schneiker-Bekel, O. Perlova, O. Kaiser, K. Gerth, A. Alici, M. O. Altmeyer, D. Bartels, T. Bekel, S. Beyer, E. Bode, et al., “Complete genome sequence of the myxobacterium Sorangium cellulosum”, Nature Biotechnology, 2007, 25, 1281-1289.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593149
M. A. Moran, R. Belas, M. A. Schell, J. M. Gonzalez, F. Sun, S. Sun, B. J. Binder, J. Edmonds, W. Ye, B. Orcutt, et al., “Ecological genomics of marine roseobacters”, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2007, 73, 4559-4569.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1594098
U. Wegmann, M. O'Connell-Motherwy, A. Zomer, G. Buist, C. Shearman, C. Canchaya, M. Ventura, A. Goesmann, M. J. Gasson, O. P. Kuipers, et al., “Complete genome sequence of the prototype lactic acid bacterium Lactococcus lactis subsp cremoris MG1363”, JOURNAL OF BACTERIOLOGY, 2007, 189, 3256-3270.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593268
M. I. Bahl, L. H. Hansen, A. Goesmann, and S. J. Sorensen, “The multiple antibiotic resistance IncP-1 plasmid pKJK5 isolated from a soil environment is phylogenetically divergent from members of the previously established alpha, beta and delta sub-groups”, PLASMID, 2007, 58, 31-43.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1894739
H. Küster, A. Becker, C. Firnhaber, N. Hohnjec, K. Manthey, A. M. Perlick, T. Bekel, M. Dondrup, K. Henckel, A. Goesmann, et al., “Development of bioinformatic tools to support EST-sequencing, in silico- and microarray-based transcriptome profiling in mycorrhizal symbioses”, Phytochemistry, 2007, 68, 19-32.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598182
S. Schneiker-Bekel, V. A. P. M. dos Santos, D. Bartels, T. Bekel, M. Brecht, J. Buhrmester, T. N. Chernikova, R. Denaro, M. Ferrer, C. Gertler, et al., “Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis”, Nature Biotechnology, 2006, 24, 997-1004.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598354 OA
N. Hohnjec, K. Henckel, T. Bekel, J. Gouzy, M. Dondrup, A. Goesmann, and H. Küster, “Transcriptional snapshots provide insights into the molecular basis of arbuscular mycorrhiza in the model legume Medicago truncatula”, FUNCTIONAL PLANT BIOLOGY, 2006, 33, 737-748.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1868701
A. Tauch, E. Trost, T. Bekel, A. Goesmann, U. Ludewig, and A. Pühler, “Ultrafast de novo sequencing of Corynebacterium urealyticum using the Genome Sequencer 20 System”, Biochemica, 2006, 4, 4-6.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596976
A. Krause, A. Ramakumar, D. Bartels, F. Battistoni, T. Bekel, J. Boch, M. Boehm, F. Friedrich, T. Hurek, L. Krause, et al., “Complete genome of the mutualistic, N-2-fixing grass endophyte Azoarcus sp strain BH72”, Nature Biotechnology, 2006, 24, 1385-1391.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1597316
T. Hain, C. Steinweg, C. T. Kuenne, A. Billion, R. Ghai, S. S. Chatterjee, E. Domann, U. Kaerst, A. Goesmann, T. Bekel, et al., “Whole-genome sequence of Listeria welshimeri reveals common steps in genome reduction with Listeria innocua as compared to Listeria monocytogenes”, Journal of Bacteriology, 2006, 188, 8299-8302.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773302 OA
D. Bartels, S. Kespohl, S. Albaum, T. Drüke, A. Goesmann, J. Herold, O. Kaiser, A. Pühler, F. Pfeiffer, G. Raddatz, et al., “BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison”, Bioinformatics, 2005, 21, 853-859.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1601712
F. Thieme, R. Koebnik, T. Bekel, C. Berger, J. Boch, D. Buttner, C. Caldana, L. Gaigalat, A. Goesmann, S. Kay, et al., “Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence”, JOURNAL OF BACTERIOLOGY, 2005, 187, 7254-7266.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773652 OA
R. Overbeek, T. Begley, R. M. Butler, J. V. Choudhuri, H. - Y. Chuang, M. Cohoon, V. de Crécy-Lagard, N. N. Diaz, T. Disz, R. Edwards, et al., “The subsystems approach to genome annotation and its use in the Project to Annotate 1000 Genomes”, Nucleic Acids Research, 2005, 33, 5691-5702.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603317
A. Tauch, O. Kaiser, T. Hain, A. Goesmann, B. Weisshaar, A. Albersmeier, T. Bekel, N. Bischoff, I. Brune, T. Chakraborty, et al., “Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora”, Journal of Bacteriology, 2005, 187, 4671-4682.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773644 OA
A. Goesmann, B. Linke, D. Bartels, M. Dondrup, L. Krause, H. Neuweger, S. Oehm, T. Paczian, A. Wilke, and F. Meyer, “BRIGEP - the BRIDGE-based genome-transcriptome-proteome browser”, Nucleic Acids Research, 2005, 33, W710-W716.
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608756
J. Westberg, A. Persson, A. Holmberg, A. Goesmann, J. Lundeberg, K. E. Johansson, B. Pettersson, and M. Uhlen, “The genome sequence of Mycoplasma mycoides subsp mycoides SC type strain PG1(T), the causative agent of contagious bovine pleuropneumonia (CBPP)”, GENOME RESEARCH, 2004, 14, 221-227.
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608953
S. Rendulic, P. Jagtap, A. Rosinus, M. Eppinger, C. Baar, C. Lanz, H. Keller, C. Lambert, K. J. Evans, A. Goesmann, et al., “A predator unmasked: Life cycle of Bdellovibrio bacteriovorus from a genomic perspective”, SCIENCE, 2004, 303, 689-692.
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1605656
R. Szczepanowski, I. Krahn, B. Linke, A. Goesmann, A. Pühler, and A. Schlüter, “Antibiotic multiresistance plasmid pRSB101 isolated from a wastewater treatment plant is related to plasmids residing in phytopathogenic bacteria and carries eight different resistance determinants including a multidrug transport system”, Microbiology, 2004, 150, 3613-3630.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1607424
A. C. McHardy, A. Goesmann, A. Pühler, and F. Meyer, “Development of joint application strategies for two microbial gene finders”, BIOINFORMATICS, 2004, 20, 1622-1631.
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