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157 Publikationen

2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1990186
Visualization of omics data for systems biology
Gehlenborg, Nils, Visualization of omics data for systems biology. Nat Methods 7 (3s). , 2010
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1930110
Comparative Genome Biology of a Serogroup B Carriage and Disease Strain Supports a Polygenic Nature of Meningococcal Virulence
Joseph, Biju, Comparative Genome Biology of a Serogroup B Carriage and Disease Strain Supports a Polygenic Nature of Meningococcal Virulence. JOURNAL OF BACTERIOLOGY 192 (20). , 2010
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2397394
Entschlüsselung mikrobieller Genomsequenzen im Schnellverfahren
Goesmann, Alexander, Entschlüsselung mikrobieller Genomsequenzen im Schnellverfahren. BIOspektrum 15 (3). , 2009
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783022 OA
Trace2PS and FSA2PS: two software toolkits for converting trace and fsa files to PostScript format
Krawczyk, Justina, Trace2PS and FSA2PS: two software toolkits for converting trace and fsa files to PostScript format. Source Code for Biology and Medicine 4 (1). , 2009
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783813 OA
Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example
Neuweger, Heiko, Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example. BMC Systems Biology 3 (1). , 2009
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783187 OA
EDGAR: a software framework for the comparative analysis of prokaryotic genomes
Blom, Jochen, EDGAR: a software framework for the comparative analysis of prokaryotic genomes. BMC Bioinformatics 10 (1). , 2009
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635300 OA
TRUNCATULIX - a data warehouse for the legume community
Henckel, Kolja, TRUNCATULIX - a data warehouse for the legume community. BMC Plant Biology 9 (1). , 2009
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634097
Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide
Strittmatter, Axel W., Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide. ENVIRONMENTAL MICROBIOLOGY 11 (5). , 2009
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634467
A portal for rhizobial genomes: RhizoGATE integrates a Sinorhizobium meliloti genome annotation update with postgenome data
Becker, Anke, A portal for rhizobial genomes: RhizoGATE integrates a Sinorhizobium meliloti genome annotation update with postgenome data. JOURNAL OF BIOTECHNOLOGY 140 (1-2). , 2009
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635314 OA
TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach
Diaz, Naryttza N., TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach. BMC Bioinformatics 10 (1). , 2009
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635321 OA
EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data
Dondrup, Michael, EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data. BMC Bioinformatics 10 (1). , 2009
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589098 OA
WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads
Gerlach, Wolfgang, WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads. BMC Bioinformatics 10 (1). , 2009
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531
Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments
Albaum, Stefan, Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments. Bioinformatics 25 (23). , 2009
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589936
Complete Genome Sequence of Lactobacillus johnsonii FI9785, a Competitive Exclusion Agent against Pathogens in Poultry
Wegmann, Udo, Complete Genome Sequence of Lactobacillus johnsonii FI9785, a Competitive Exclusion Agent against Pathogens in Poultry. JOURNAL OF BACTERIOLOGY 191 (22). , 2009
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634447
The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies
Bekel, Thomas, The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies. Journal of Biotechnology 140 (1-2). , 2009
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634461
An evaluation framework for statistical tests on microarray data
Dondrup, Michael, An evaluation framework for statistical tests on microarray data. JOURNAL OF BIOTECHNOLOGY 140 (1-2). , 2009
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636699
MeltDB: a software platform for the analysis and integration of metabolomics experiment data
Neuweger, Heiko, MeltDB: a software platform for the analysis and integration of metabolomics experiment data. Bioinformatics 24 (23). , 2008
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783292 OA
The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae
Gross, Roy, The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae. BMC Genomics 9 (1). , 2008
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592024
The genome of Xanthomonas campestris pv. campestris B 100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis
Vorhölter, Frank-Jörg, The genome of Xanthomonas campestris pv. campestris B 100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis. Journal of Biotechnology 134 (1-2). , 2008
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592257
Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis
Schoen, Christoph, Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 105 (9). , 2008
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586009
Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor
Krause, Lutz, Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor. JOURNAL OF BIOTECHNOLOGY 136 (1-2). , 2008
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585956
Comparative genomic hybridisation and ultrafast pyrosequencing revealed remarkable differences between the Sinorhizobium meliloti genomes of the model strain Rm1021 and the field isolate SM11
Stiens, Michael, Comparative genomic hybridisation and ultrafast pyrosequencing revealed remarkable differences between the Sinorhizobium meliloti genomes of the model strain Rm1021 and the field isolate SM11. Journal of Biotechnology 136 (1-2). , 2008
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585987
The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology
Schlüter, Andreas, The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology. Journal of Biotechnology 136 (1-2). , 2008
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585918
The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencing
Tauch, Andreas, The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencing. Journal of Biotechnology 136 (1-2). , 2008
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586785 OA
Comparative Pathway Analyzer - a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms
Oehm, Sebastian, Comparative Pathway Analyzer - a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms. NUCLEIC ACIDS RESEARCH 36 (Web Server). , 2008
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585939
Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids
Tauch, Andreas, Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids. Journal of Biotechnology 136 (1-2). , 2008
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783364 OA
Phylogenetic classification of short environmental DNA fragments
Krause, Lutz, Phylogenetic classification of short environmental DNA fragments. Nucleic Acids Research 36 (7). , 2008
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018381
ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract)
Albaum, Stefan, ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract). HUPO 7th Annual World Congress (). , 2008
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1990198
Bacteriophage 2851 is a prototype phage for dissemination of the Shiga toxin variant gene 2c in Escherichia coli O157:H7
Strauch, Eckhard, Bacteriophage 2851 is a prototype phage for dissemination of the Shiga toxin variant gene 2c in Escherichia coli O157:H7. Infection and Immunity 76 (12). , 2008
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631047
Genomic sequence of chorioallantois vaccinia virus Ankara, the ancestor of modified vaccinia virus Ankara
Meisinger-Henschel, Christine, Genomic sequence of chorioallantois vaccinia virus Ankara, the ancestor of modified vaccinia virus Ankara. JOURNAL OF GENERAL VIROLOGY 88 (12). , 2007
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783754 OA
CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data
Neuweger, Heiko, CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data. BMC Systems Biology 1 (1). , 2007
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631327
Complete genome sequence of the myxobacterium Sorangium cellulosum
Schneiker-Bekel, Susanne, Complete genome sequence of the myxobacterium Sorangium cellulosum. Nature Biotechnology 25 (11). , 2007
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593149
Ecological genomics of marine roseobacters
Moran, M. A., Ecological genomics of marine roseobacters. APPLIED AND ENVIRONMENTAL MICROBIOLOGY 73 (14). , 2007
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1594098
Complete genome sequence of the prototype lactic acid bacterium Lactococcus lactis subsp cremoris MG1363
Wegmann, Udo, Complete genome sequence of the prototype lactic acid bacterium Lactococcus lactis subsp cremoris MG1363. JOURNAL OF BACTERIOLOGY 189 (8). , 2007
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593268
The multiple antibiotic resistance IncP-1 plasmid pKJK5 isolated from a soil environment is phylogenetically divergent from members of the previously established alpha, beta and delta sub-groups
Bahl, Martin Iain, The multiple antibiotic resistance IncP-1 plasmid pKJK5 isolated from a soil environment is phylogenetically divergent from members of the previously established alpha, beta and delta sub-groups. PLASMID 58 (1). , 2007
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1894739
Development of bioinformatic tools to support EST-sequencing, in silico- and microarray-based transcriptome profiling in mycorrhizal symbioses
Küster, Helge, Development of bioinformatic tools to support EST-sequencing, in silico- and microarray-based transcriptome profiling in mycorrhizal symbioses. Phytochemistry 68 (1). , 2007
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598182
Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis
Schneiker-Bekel, Susanne, Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis. Nature Biotechnology 24 (8). , 2006
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598354 OA
Transcriptional snapshots provide insights into the molecular basis of arbuscular mycorrhiza in the model legume Medicago truncatula
Hohnjec, Natalija, Transcriptional snapshots provide insights into the molecular basis of arbuscular mycorrhiza in the model legume Medicago truncatula. FUNCTIONAL PLANT BIOLOGY 33 (8). , 2006
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1868701
Ultrafast de novo sequencing of Corynebacterium urealyticum using the Genome Sequencer 20 System
Tauch, Andreas, Ultrafast de novo sequencing of Corynebacterium urealyticum using the Genome Sequencer 20 System. Biochemica 4 (). , 2006
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596976
Complete genome of the mutualistic, N-2-fixing grass endophyte Azoarcus sp strain BH72
Krause, Andrea, Complete genome of the mutualistic, N-2-fixing grass endophyte Azoarcus sp strain BH72. Nature Biotechnology 24 (11). , 2006
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1597316
Whole-genome sequence of Listeria welshimeri reveals common steps in genome reduction with Listeria innocua as compared to Listeria monocytogenes
Hain, Torsten, Whole-genome sequence of Listeria welshimeri reveals common steps in genome reduction with Listeria innocua as compared to Listeria monocytogenes. Journal of Bacteriology 188 (23). , 2006
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773302 OA
BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison
Bartels, Daniela, BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison. Bioinformatics 21 (7). , 2005
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1601712
Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence
Thieme, F, Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence. JOURNAL OF BACTERIOLOGY 187 (21). , 2005
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773652 OA
The subsystems approach to genome annotation and its use in the Project to Annotate 1000 Genomes
Overbeek, Ross, The subsystems approach to genome annotation and its use in the Project to Annotate 1000 Genomes. Nucleic Acids Research 33 (17). , 2005
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603317
Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora
Tauch, Andreas, Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora. Journal of Bacteriology 187 (13). , 2005
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773644 OA
BRIGEP - the BRIDGE-based genome-transcriptome-proteome browser
Goesmann, Alexander, BRIGEP - the BRIDGE-based genome-transcriptome-proteome browser. Nucleic Acids Research 33 (Web Server). , 2005
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608756
The genome sequence of Mycoplasma mycoides subsp mycoides SC type strain PG1(T), the causative agent of contagious bovine pleuropneumonia (CBPP)
Westberg, J, The genome sequence of Mycoplasma mycoides subsp mycoides SC type strain PG1(T), the causative agent of contagious bovine pleuropneumonia (CBPP). GENOME RESEARCH 14 (2). , 2004
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608953
A predator unmasked: Life cycle of Bdellovibrio bacteriovorus from a genomic perspective
Rendulic, S, A predator unmasked: Life cycle of Bdellovibrio bacteriovorus from a genomic perspective. SCIENCE 303 (5658). , 2004
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1605656
Antibiotic multiresistance plasmid pRSB101 isolated from a wastewater treatment plant is related to plasmids residing in phytopathogenic bacteria and carries eight different resistance determinants including a multidrug transport system
Szczepanowski, Rafael, Antibiotic multiresistance plasmid pRSB101 isolated from a wastewater treatment plant is related to plasmids residing in phytopathogenic bacteria and carries eight different resistance determinants including a multidrug transport system. Microbiology 150 (11). , 2004
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1607424
Development of joint application strategies for two microbial gene finders
McHardy, A. C., Development of joint application strategies for two microbial gene finders. BIOINFORMATICS 20 (10). , 2004
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609286
Building a BRIDGE for the integration of heterogeneous data from functional genomics into a platform for systems biology
Goesmann, Alexander, Building a BRIDGE for the integration of heterogeneous data from functional genomics into a platform for systems biology. JOURNAL OF BIOTECHNOLOGY 106 (2-3). , 2003
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609251
Whole genome shotgun sequencing guided-by bioinformatics pipelines - An optimized approach for an established technique
Kaiser, O., Whole genome shotgun sequencing guided-by bioinformatics pipelines - An optimized approach for an established technique. JOURNAL OF BIOTECHNOLOGY 106 (2-3). , 2003
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609260
EMMA: a platform for consistent storage and efficient analysis of microarray data
Dondrup, M., EMMA: a platform for consistent storage and efficient analysis of microarray data. JOURNAL OF BIOTECHNOLOGY 106 (2-3). , 2003
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609272
Bioinformatics support for high-throughput proteomics
Wilke, A., Bioinformatics support for high-throughput proteomics. JOURNAL OF BIOTECHNOLOGY 106 (2-3). , 2003
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1612324 OA
The 79,370-bp conjugative plasmid pB4 consists of an IncP-1 beta backbone loaded with a chromate resistance transposon, the strA-strB streptomycin resistance gene pair, the oxacillinase gene bla(NPS-1), and a tripartite antibiotic efflux system of the resistance-nodulation-division family
Tauch, Andreas, The 79,370-bp conjugative plasmid pB4 consists of an IncP-1 beta backbone loaded with a chromate resistance transposon, the strA-strB streptomycin resistance gene pair, the oxacillinase gene bla(NPS-1), and a tripartite antibiotic efflux system of the resistance-nodulation-division family. Molecular Genetics and Genomics 268 (5). , 2003
PUB | PDF | DOI | WoS | PubMed | Europe PMC | GenBank
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773880 OA
GenDB - an open source genome annotation system for prokaryote genomes
Meyer, Folker, GenDB - an open source genome annotation system for prokaryote genomes. Nucleic Acids Research 31 (8). , 2003
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1895035
The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins
Kalinowski, Jörn, The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins. Journal of Biotechnology 104 (1-3). , 2003
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