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157 Publikationen
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1990186
Gehlenborg N, O'Donoghue SI, Baliga NS, Goesmann A, Hibbs MA, Kitano H, Kohlbacher O, Neuweger H, Schneider R, Tenenbaum D, Gavin A-C (2010)
Visualization of omics data for systems biology.
Nat Methods 7(3s): S56-S68.
PUB | DOI | WoS | PubMed | Europe PMC
Visualization of omics data for systems biology.
Nat Methods 7(3s): S56-S68.
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1930110
Joseph B, Schneiker-Bekel S, Schramm-Glueck A, Blom J, Claus H, Linke B, Schwarz RF, Becker A, Goesmann A, Frosch M, Schoen C (2010)
Comparative Genome Biology of a Serogroup B Carriage and Disease Strain Supports a Polygenic Nature of Meningococcal Virulence.
JOURNAL OF BACTERIOLOGY 192(20): 5363-5377.
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Comparative Genome Biology of a Serogroup B Carriage and Disease Strain Supports a Polygenic Nature of Meningococcal Virulence.
JOURNAL OF BACTERIOLOGY 192(20): 5363-5377.
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2397394
Goesmann A, Schneider J, Trost E, Tauch A (2009)
Entschlüsselung mikrobieller Genomsequenzen im Schnellverfahren.
BIOspektrum 15(3): 279-281.
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Entschlüsselung mikrobieller Genomsequenzen im Schnellverfahren.
BIOspektrum 15(3): 279-281.
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783022 
Krawczyk J, Goesmann A, Nolte R, Werber M, Weisshaar B (2009)
Trace2PS and FSA2PS: two software toolkits for converting trace and fsa files to PostScript format.
Source Code for Biology and Medicine 4(1): 4.
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Trace2PS and FSA2PS: two software toolkits for converting trace and fsa files to PostScript format.
Source Code for Biology and Medicine 4(1): 4.
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783813
Neuweger H, Persicke M, Albaum S, Bekel T, Dondrup M, Hüser AT, Winnebald J, Schneider J, Kalinowski J, Goesmann A (2009)
Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example.
BMC Systems Biology 3(1): 82.
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Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example.
BMC Systems Biology 3(1): 82.
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783187
Blom J, Albaum S, Doppmeier D, Pühler A, Vorhölter F-J, Zakrzewski M, Goesmann A (2009)
EDGAR: a software framework for the comparative analysis of prokaryotic genomes.
BMC Bioinformatics 10(1): 154.
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EDGAR: a software framework for the comparative analysis of prokaryotic genomes.
BMC Bioinformatics 10(1): 154.
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634097
Strittmatter AW, Liesegang H, Rabus R, Decker I, Amann J, Andres S, Henne A, Fricke WF, Martinez-Arias R, Bartels D, Goesmann A, Krause L, Pühler A, Klenk H-P, Richter M, Schueler M, Gloeckner FO, Meyerdierks A, Gottschalk G, Amann R (2009)
Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide.
ENVIRONMENTAL MICROBIOLOGY 11(5): 1038-1055.
PUB | DOI | WoS | PubMed | Europe PMC
Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide.
ENVIRONMENTAL MICROBIOLOGY 11(5): 1038-1055.
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634467
Becker A, Barnett MJ, Capela D, Dondrup M, Kamp P-B, Krol E, Linke B, Rüberg S, Runte K, Schroeder BK, Weidner S, Yurgel SN, Batut J, Long SR, Pühler A, Goesmann A (2009)
A portal for rhizobial genomes: RhizoGATE integrates a Sinorhizobium meliloti genome annotation update with postgenome data.
JOURNAL OF BIOTECHNOLOGY 140(1-2): 45-50.
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A portal for rhizobial genomes: RhizoGATE integrates a Sinorhizobium meliloti genome annotation update with postgenome data.
JOURNAL OF BIOTECHNOLOGY 140(1-2): 45-50.
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635314
Diaz NN, Krause L, Goesmann A, Niehaus K, Nattkemper TW (2009)
TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach.
BMC Bioinformatics 10(1): 56.
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TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach.
BMC Bioinformatics 10(1): 56.
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635321
Dondrup M, Albaum S, Griebel T, Henckel K, Jünemann S, Kahlke T, Kleindt CK, Kuester H, Linke B, Mertens D, Mittard-Runte V, Neuweger H, Runte KJ, Tauch A, Tille F, Pühler A, Goesmann A (2009)
EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data.
BMC Bioinformatics 10(1): 50.
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EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data.
BMC Bioinformatics 10(1): 50.
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589098
Gerlach W, Jünemann S, Tille F, Goesmann A, Stoye J (2009)
WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads.
BMC Bioinformatics 10(1): 430.
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WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads.
BMC Bioinformatics 10(1): 430.
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531
Albaum S, Neuweger H, Fraenzel B, Lange S, Mertens D, Troetschel C, Wolters D, Kalinowski J, Nattkemper TW, Goesmann A (2009)
Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments.
Bioinformatics 25(23): 3128-3134.
PUB | DOI | WoS | PubMed | Europe PMC
Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments.
Bioinformatics 25(23): 3128-3134.
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589936
Wegmann U, Overweg K, Horn N, Goesmann A, Narbad A, Gasson MJ, Shearman C (2009)
Complete Genome Sequence of Lactobacillus johnsonii FI9785, a Competitive Exclusion Agent against Pathogens in Poultry.
JOURNAL OF BACTERIOLOGY 191(22): 7142-7143.
PUB | DOI | WoS | PubMed | Europe PMC
Complete Genome Sequence of Lactobacillus johnsonii FI9785, a Competitive Exclusion Agent against Pathogens in Poultry.
JOURNAL OF BACTERIOLOGY 191(22): 7142-7143.
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634447
Bekel T, Henckel K, Küster H, Meyer F, Mittard-Runte V, Neuweger H, Paarmann D, Rupp O, Zakrzewski M, Pühler A, Stoye J, Goesmann A (2009)
The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies.
Journal of Biotechnology 140(1-2): 3-12.
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The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies.
Journal of Biotechnology 140(1-2): 3-12.
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634461
Dondrup M, Hueser AT, Mertens D, Goesmann A (2009)
An evaluation framework for statistical tests on microarray data.
JOURNAL OF BIOTECHNOLOGY 140(1-2): 18-26.
PUB | DOI | WoS | PubMed | Europe PMC
An evaluation framework for statistical tests on microarray data.
JOURNAL OF BIOTECHNOLOGY 140(1-2): 18-26.
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636699
Neuweger H, Albaum S, Dondrup M, Persicke M, Watt T, Niehaus K, Stoye J, Goesmann A (2008)
MeltDB: a software platform for the analysis and integration of metabolomics experiment data.
Bioinformatics 24(23): 2726-2732.
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MeltDB: a software platform for the analysis and integration of metabolomics experiment data.
Bioinformatics 24(23): 2726-2732.
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783292
Gross R, Guzman CA, Sebaihia M, Martins dos Santos VAP, Pieper DH, Koebnik R, Lechner M, Bartels D, Buhrmester J, Choudhuri JV, Ebensen T, Gaigalat L, Herrmann S, Khachane AN, Larisch C, Link S, Linke B, Meyer F, Mormann S, Nakunst D, Rückert C, Schneiker-Bekel S, Schulze K, Vorhölter F-J, Yevsa T, Engle JT, Goldman WE ., Pühler A, Göbel UB, Goesmann A, Blöcker H, Kaiser O, Martinez-Arias R (2008)
The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae.
BMC Genomics 9(1): 449.
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The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae.
BMC Genomics 9(1): 449.
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592024
Vorhölter F-J, Schneiker-Bekel S, Goesmann A, Krause L, Bekel T, Kaiser O, Linke B, Patschkowski T, Rückert C, Schmid J, Sidhu VK, Sieber V, Tauch A, Watt SA, Weisshaar B, Becker A, Niehaus K, Pühler A (2008)
The genome of Xanthomonas campestris pv. campestris B 100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis.
Journal of Biotechnology 134(1-2): 33-45.
PUB | DOI | WoS | PubMed | Europe PMC
The genome of Xanthomonas campestris pv. campestris B 100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis.
Journal of Biotechnology 134(1-2): 33-45.
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592257
Schoen C, Blom J, Claus H, Schramm-Glueck A, Brandt P, Mueller T, Goesmann A, Joseph B, Konietzny S, Kurzai O, Schmitt C, Friedrich T, Linke B, Vogel U, Frosch M (2008)
Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 105(9): 3473-3478.
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| GenBank
Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 105(9): 3473-3478.
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586009
Krause L, Diaz NN, Edwards RA, Gartemann K-H, Krömeke H, Neuweger H, Pühler A, Runte KJ, Schlüter A, Stoye J, Szczepanowski R, Tauch A, Goesmann A (2008)
Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor.
JOURNAL OF BIOTECHNOLOGY 136(1-2): 91-101.
PUB | DOI | WoS | PubMed | Europe PMC
Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor.
JOURNAL OF BIOTECHNOLOGY 136(1-2): 91-101.
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585956
Stiens M, Becker A, Bekel T, Gödde V, Goesmann A, Niehaus K, Schneiker-Bekel S, Selbitschka W, Weidner S, Schlüter A, Pühler A (2008)
Comparative genomic hybridisation and ultrafast pyrosequencing revealed remarkable differences between the Sinorhizobium meliloti genomes of the model strain Rm1021 and the field isolate SM11.
Journal of Biotechnology 136(1-2): 31-37.
PUB | DOI | WoS | PubMed | Europe PMC
Comparative genomic hybridisation and ultrafast pyrosequencing revealed remarkable differences between the Sinorhizobium meliloti genomes of the model strain Rm1021 and the field isolate SM11.
Journal of Biotechnology 136(1-2): 31-37.
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585987
Schlüter A, Bekel T, Diaz NN, Dondrup M, Eichenlaub R, Gartemann K-H, Krahn I, Krause L, Kroemeke H, Kruse O, Mussgnug JH, Neuweger H, Niehaus K, Pühler A, Runte KJ, Szczepanowski R, Tauch A, Tilker A, Viehöver P, Goesmann A (2008)
The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology.
Journal of Biotechnology 136(1-2): 77-90.
PUB | DOI | WoS | PubMed | Europe PMC
The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology.
Journal of Biotechnology 136(1-2): 77-90.
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585918
Tauch A, Trost E, Tilker A, Ludewig U, Schneiker-Bekel S, Goesmann A, Arnold W, Bekel T, Brinkrolf K, Brune I, Goetker S, Kalinowski J, Kamp P-B, Lobo FP, Viehöver P, Weisshaar B, Soriano F, Droege M, Pühler A (2008)
The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencing.
Journal of Biotechnology 136(1-2): 11-21.
PUB | DOI | WoS | PubMed | Europe PMC
The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencing.
Journal of Biotechnology 136(1-2): 11-21.
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586785
Oehm S, Gilbert D, Tauch A, Stoye J, Goesmann A (2008)
Comparative Pathway Analyzer - a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms.
NUCLEIC ACIDS RESEARCH 36(Web Server): W433-W437.
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Comparative Pathway Analyzer - a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms.
NUCLEIC ACIDS RESEARCH 36(Web Server): W433-W437.
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585939
Tauch A, Schneider J, Szczepanowski R, Tilker A, Viehöver P, Gartemann K-H, Arnold W, Blom J, Brinkrolf K, Brune I, Goetker S, Weisshaar B, Goesmann A, Droege M, Pühler A (2008)
Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids.
Journal of Biotechnology 136(1-2): 22-30.
PUB | DOI | WoS | PubMed | Europe PMC
Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids.
Journal of Biotechnology 136(1-2): 22-30.
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783364
Krause L, Diaz NN, Goesmann A, Kelley S, Nattkemper TW, Rohwer F, Edwards RA, Stoye J (2008)
Phylogenetic classification of short environmental DNA fragments.
Nucleic Acids Research 36(7): 2230-2239.
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Phylogenetic classification of short environmental DNA fragments.
Nucleic Acids Research 36(7): 2230-2239.
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018381
Albaum S, Neuweger H, Lange S, Mertens D, Runte K, Kalinowski J, Nattkemper TW, Goesmann A (2008)
ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract).
In: HUPO 7th Annual World Congress. .
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ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract).
In: HUPO 7th Annual World Congress. .
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1990198
Strauch E, Hammerl JA, Konietzny A, Schneiker-Bekel S, Arnold W, Goesmann A, Pühler A, Beutin L (2008)
Bacteriophage 2851 is a prototype phage for dissemination of the Shiga toxin variant gene 2c in Escherichia coli O157:H7.
Infection and Immunity 76(12): 5466-5477.
PUB | DOI | WoS | PubMed | Europe PMC
Bacteriophage 2851 is a prototype phage for dissemination of the Shiga toxin variant gene 2c in Escherichia coli O157:H7.
Infection and Immunity 76(12): 5466-5477.
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631047
Meisinger-Henschel C, Schmidt M, Lukassen S, Linke B, Krause L, Konietzny S, Goesmann A, Howley P, Chaplin P, Suter M, Hausmann J (2007)
Genomic sequence of chorioallantois vaccinia virus Ankara, the ancestor of modified vaccinia virus Ankara.
JOURNAL OF GENERAL VIROLOGY 88(12): 3249-3259.
PUB | DOI | WoS | PubMed | Europe PMC
Genomic sequence of chorioallantois vaccinia virus Ankara, the ancestor of modified vaccinia virus Ankara.
JOURNAL OF GENERAL VIROLOGY 88(12): 3249-3259.
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783754
Neuweger H, Baumbach J, Albaum S, Bekel T, Dondrup M, Hüser AT, Kalinowski J, Oehm S, Pühler A, Rahmann S, Weile J, Goesmann A (2007)
CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data.
BMC Systems Biology 1(1): 55.
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CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data.
BMC Systems Biology 1(1): 55.
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631327
Schneiker-Bekel S, Perlova O, Kaiser O, Gerth K, Alici A, Altmeyer MO, Bartels D, Bekel T, Beyer S, Bode E, Bode HB, Bolten CJ, Choudhuri JV, Doss S, Elnakady YA, Frank B, Gaigalat L, Goesmann A, Groeger C, Gross F, Jelsbak L, Jelsbak L, Kalinowski J, Kegler C, Knauber T, Konietzny S, Kopp M, Krause L, Krug D, Linke B, Mahmud T, Martinez-Arias R, McHardy AC, Merai M, Meyer F, Mormann S, Munoz-Dorado J, Perez J, Pradella S, Rachid S, Raddatz G, Rosenau F, Rückert C, Sasse F, Scharfe M, Schuster SC, Suen G, Treuner-Lange A, Velicer GJ, Vorhölter F-J, Weissman KJ, Welch RD, Wenzel SC, Whitworth DE, Wilhelm S, Wittmann C, Bloecker H, Pühler A, Mueller R (2007)
Complete genome sequence of the myxobacterium Sorangium cellulosum.
Nature Biotechnology 25(11): 1281-1289.
PUB | DOI | WoS | PubMed | Europe PMC
Complete genome sequence of the myxobacterium Sorangium cellulosum.
Nature Biotechnology 25(11): 1281-1289.
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593149
Moran MA, Belas R, Schell MA, Gonzalez JM, Sun F, Sun S, Binder BJ, Edmonds J, Ye W, Orcutt B, Howard EC, Meile C, Palefsky W, Goesmann A, Ren Q, Paulsen I, Ulrich LE, Thompson LS, Saunders E, Buchan A (2007)
Ecological genomics of marine roseobacters.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY 73(14): 4559-4569.
PUB | DOI | WoS | PubMed | Europe PMC
Ecological genomics of marine roseobacters.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY 73(14): 4559-4569.
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1594098
Wegmann U, O'Connell-Motherwy M, Zomer A, Buist G, Shearman C, Canchaya C, Ventura M, Goesmann A, Gasson MJ, Kuipers OP, van Sinderen D, Kok J (2007)
Complete genome sequence of the prototype lactic acid bacterium Lactococcus lactis subsp cremoris MG1363.
JOURNAL OF BACTERIOLOGY 189(8): 3256-3270.
PUB | DOI | WoS | PubMed | Europe PMC
Complete genome sequence of the prototype lactic acid bacterium Lactococcus lactis subsp cremoris MG1363.
JOURNAL OF BACTERIOLOGY 189(8): 3256-3270.
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593268
Bahl MI, Hansen LH, Goesmann A, Sorensen SJ (2007)
The multiple antibiotic resistance IncP-1 plasmid pKJK5 isolated from a soil environment is phylogenetically divergent from members of the previously established alpha, beta and delta sub-groups.
PLASMID 58(1): 31-43.
PUB | DOI | WoS | PubMed | Europe PMC
The multiple antibiotic resistance IncP-1 plasmid pKJK5 isolated from a soil environment is phylogenetically divergent from members of the previously established alpha, beta and delta sub-groups.
PLASMID 58(1): 31-43.
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1894739
Küster H, Becker A, Firnhaber C, Hohnjec N, Manthey K, Perlick AM, Bekel T, Dondrup M, Henckel K, Goesmann A, Meyer F, Wipf D, Requena N, Hildebrandt U, Hampp R, Nehls U, Krajinski F, Franken P, Pühler A (2007)
Development of bioinformatic tools to support EST-sequencing, in silico- and microarray-based transcriptome profiling in mycorrhizal symbioses.
Phytochemistry 68(1): 19-32.
PUB | DOI | WoS | PubMed | Europe PMC
Development of bioinformatic tools to support EST-sequencing, in silico- and microarray-based transcriptome profiling in mycorrhizal symbioses.
Phytochemistry 68(1): 19-32.
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598182
Schneiker-Bekel S, dos Santos VAPM, Bartels D, Bekel T, Brecht M, Buhrmester J, Chernikova TN, Denaro R, Ferrer M, Gertler C, Goesmann A, Golyshina OV, Kaminski F, Khachane AN, Lang S, Linke B, McHardy AC, Meyer F, Nechitaylo T, Pühler A, Regenhardt D, Rupp O, Sabirova JS, Selbitschka W, Yakimov MM, Timmis KN, Vorhölter F-J, Weidner S, Kaiser O, Golyshin PN (2006)
Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis.
Nature Biotechnology 24(8): 997-1004.
PUB | DOI | WoS | PubMed | Europe PMC
Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis.
Nature Biotechnology 24(8): 997-1004.
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598354
Hohnjec N, Henckel K, Bekel T, Gouzy J, Dondrup M, Goesmann A, Küster H (2006)
Transcriptional snapshots provide insights into the molecular basis of arbuscular mycorrhiza in the model legume Medicago truncatula.
FUNCTIONAL PLANT BIOLOGY 33(8): 737-748.
PUB
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Transcriptional snapshots provide insights into the molecular basis of arbuscular mycorrhiza in the model legume Medicago truncatula.
FUNCTIONAL PLANT BIOLOGY 33(8): 737-748.
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1868701
Tauch A, Trost E, Bekel T, Goesmann A, Ludewig U, Pühler A (2006)
Ultrafast de novo sequencing of Corynebacterium urealyticum using the Genome Sequencer 20 System.
Biochemica 4: 4-6.
PUB
Ultrafast de novo sequencing of Corynebacterium urealyticum using the Genome Sequencer 20 System.
Biochemica 4: 4-6.
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596976
Krause A, Ramakumar A, Bartels D, Battistoni F, Bekel T, Boch J, Boehm M, Friedrich F, Hurek T, Krause L, Linke B, McHardy AC, Sarkar A, Schneiker-Bekel S, Syed AA, Thauer R, Vorhölter F-J, Weidner S, Pühler A, Reinhold-Hurek B, Kaiser O, Goesmann A (2006)
Complete genome of the mutualistic, N-2-fixing grass endophyte Azoarcus sp strain BH72.
Nature Biotechnology 24(11): 1385-1391.
PUB | DOI | WoS | PubMed | Europe PMC
Complete genome of the mutualistic, N-2-fixing grass endophyte Azoarcus sp strain BH72.
Nature Biotechnology 24(11): 1385-1391.
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1597316
Hain T, Steinweg C, Kuenne CT, Billion A, Ghai R, Chatterjee SS, Domann E, Kaerst U, Goesmann A, Bekel T, Bartels D, Kaiser O, Meyer F, Pühler A, Weisshaar B, Wehland J, Liang C, Dandekar T, Lampidis R, Kreft J, Goebel W, Chakraborty T (2006)
Whole-genome sequence of Listeria welshimeri reveals common steps in genome reduction with Listeria innocua as compared to Listeria monocytogenes.
Journal of Bacteriology 188(23): 8299-8302.
PUB | DOI | WoS | PubMed | Europe PMC
Whole-genome sequence of Listeria welshimeri reveals common steps in genome reduction with Listeria innocua as compared to Listeria monocytogenes.
Journal of Bacteriology 188(23): 8299-8302.
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773302
Bartels D, Kespohl S, Albaum S, Drüke T, Goesmann A, Herold J, Kaiser O, Pühler A, Pfeiffer F, Raddatz G, Stoye J, Meyer F, Schuster SC (2005)
BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison.
Bioinformatics 21(7): 853-859.
PUB
| PDF | DOI | WoS | PubMed | Europe PMC
BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison.
Bioinformatics 21(7): 853-859.
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1601712
Thieme F, Koebnik R, Bekel T, Berger C, Boch J, Buttner D, Caldana C, Gaigalat L, Goesmann A, Kay S, Kirchner O, Lanz C, Linke B, McHardy AC, Meyer F, Mittenhuber G, Nies DH, Niesbach-Klosgen U, Patschkowski T, Rückert C, Rupp O, Schneiker-Bekel S, Schuster SC, Vorhölter F-J, Weber E, Pühler A, Bonas U, Bartels D, Kaiser O (2005)
Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence.
JOURNAL OF BACTERIOLOGY 187(21): 7254-7266.
PUB | DOI | WoS | PubMed | Europe PMC
Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence.
JOURNAL OF BACTERIOLOGY 187(21): 7254-7266.
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773652
Overbeek R, Begley T, Butler RM, Choudhuri JV, Chuang H-Y, Cohoon M, Crécy-Lagard V de, Diaz NN, Disz T, Edwards R, Fonstein M, Frank ED, Gerdes S, Glass EM, Goesmann A, Hanson A, Iwata-Reuyl D, Jensen R, Jamshidi N, Krause L, Kubal M, Larsen N, Linke B, McHardy AC, Meyer F, Neuweger H, Olsen G, Olson R, Osterman A, Portnoy V, Pusch GD, Rodionov DA, Rückert C, Steiner J, Stevens R, Thiele I, Vassieva O, Ye Y, Zagnitko O, Vonstein V (2005)
The subsystems approach to genome annotation and its use in the Project to Annotate 1000 Genomes.
Nucleic Acids Research 33(17): 5691-5702.
PUB
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The subsystems approach to genome annotation and its use in the Project to Annotate 1000 Genomes.
Nucleic Acids Research 33(17): 5691-5702.
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603317
Tauch A, Kaiser O, Hain T, Goesmann A, Weisshaar B, Albersmeier A, Bekel T, Bischoff N, Brune I, Chakraborty T, Kalinowski J, Meyer F, Rupp O, Schneiker-Bekel S, Viehöver P, Pühler A (2005)
Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora.
Journal of Bacteriology 187(13): 4671-4682.
PUB | DOI | WoS | PubMed | Europe PMC
| GenBank
Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora.
Journal of Bacteriology 187(13): 4671-4682.
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773644
Goesmann A, Linke B, Bartels D, Dondrup M, Krause L, Neuweger H, Oehm S, Paczian T, Wilke A, Meyer F (2005)
BRIGEP - the BRIDGE-based genome-transcriptome-proteome browser.
Nucleic Acids Research 33(Web Server): W710-W716.
PUB
| PDF | DOI | WoS | PubMed | Europe PMC
BRIGEP - the BRIDGE-based genome-transcriptome-proteome browser.
Nucleic Acids Research 33(Web Server): W710-W716.
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608756
Westberg J, Persson A, Holmberg A, Goesmann A, Lundeberg J, Johansson KE, Pettersson B, Uhlen M (2004)
The genome sequence of Mycoplasma mycoides subsp mycoides SC type strain PG1(T), the causative agent of contagious bovine pleuropneumonia (CBPP).
GENOME RESEARCH 14(2): 221-227.
PUB | DOI | WoS | PubMed | Europe PMC
The genome sequence of Mycoplasma mycoides subsp mycoides SC type strain PG1(T), the causative agent of contagious bovine pleuropneumonia (CBPP).
GENOME RESEARCH 14(2): 221-227.
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608953
Rendulic S, Jagtap P, Rosinus A, Eppinger M, Baar C, Lanz C, Keller H, Lambert C, Evans KJ, Goesmann A, Meyer F, Sockett RE, Schuster SC (2004)
A predator unmasked: Life cycle of Bdellovibrio bacteriovorus from a genomic perspective.
SCIENCE 303(5658): 689-692.
PUB | DOI | WoS | PubMed | Europe PMC
A predator unmasked: Life cycle of Bdellovibrio bacteriovorus from a genomic perspective.
SCIENCE 303(5658): 689-692.
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1605656
Szczepanowski R, Krahn I, Linke B, Goesmann A, Pühler A, Schlüter A (2004)
Antibiotic multiresistance plasmid pRSB101 isolated from a wastewater treatment plant is related to plasmids residing in phytopathogenic bacteria and carries eight different resistance determinants including a multidrug transport system.
Microbiology 150(11): 3613-3630.
PUB | DOI | WoS | PubMed | Europe PMC
| GenBank
Antibiotic multiresistance plasmid pRSB101 isolated from a wastewater treatment plant is related to plasmids residing in phytopathogenic bacteria and carries eight different resistance determinants including a multidrug transport system.
Microbiology 150(11): 3613-3630.
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1607424
McHardy AC, Goesmann A, Pühler A, Meyer F (2004)
Development of joint application strategies for two microbial gene finders.
BIOINFORMATICS 20(10): 1622-1631.
PUB | DOI | WoS | PubMed | Europe PMC
Development of joint application strategies for two microbial gene finders.
BIOINFORMATICS 20(10): 1622-1631.
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609286
Goesmann A, Linke B, Rupp O, Krause L, Bartels D, Dondrup M, McHardy AC, Wilke A, Pühler A, Meyer F (2003)
Building a BRIDGE for the integration of heterogeneous data from functional genomics into a platform for systems biology.
JOURNAL OF BIOTECHNOLOGY 106(2-3): 157-167.
PUB | DOI | WoS | PubMed | Europe PMC
Building a BRIDGE for the integration of heterogeneous data from functional genomics into a platform for systems biology.
JOURNAL OF BIOTECHNOLOGY 106(2-3): 157-167.
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609251
Kaiser O, Bartels D, Bekel T, Goesmann A, Kespohl S, Pühler A, Meyer F (2003)
Whole genome shotgun sequencing guided-by bioinformatics pipelines - An optimized approach for an established technique.
JOURNAL OF BIOTECHNOLOGY 106(2-3): 121-133.
PUB | DOI | WoS | PubMed | Europe PMC
Whole genome shotgun sequencing guided-by bioinformatics pipelines - An optimized approach for an established technique.
JOURNAL OF BIOTECHNOLOGY 106(2-3): 121-133.
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609260
Dondrup M, Goesmann A, Bartels D, Kalinowski J, Krause L, Linke B, Rupp O, Sczyrba A, Pühler A, Meyer F (2003)
EMMA: a platform for consistent storage and efficient analysis of microarray data.
JOURNAL OF BIOTECHNOLOGY 106(2-3): 135-146.
PUB | DOI | WoS | PubMed | Europe PMC
EMMA: a platform for consistent storage and efficient analysis of microarray data.
JOURNAL OF BIOTECHNOLOGY 106(2-3): 135-146.
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609272
Wilke A, Rückert C, Bartels D, Dondrup M, Goesmann A, Hüser AT, Kespohl S, Linke B, Mahne M, McHardy A, Pühler A, Meyer F (2003)
Bioinformatics support for high-throughput proteomics.
JOURNAL OF BIOTECHNOLOGY 106(2-3): 147-156.
PUB | DOI | WoS | PubMed | Europe PMC
Bioinformatics support for high-throughput proteomics.
JOURNAL OF BIOTECHNOLOGY 106(2-3): 147-156.
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1612324
Tauch A, Schlüter A, Bischoff N, Goesmann A, Meyer F, Pühler A (2003)
The 79,370-bp conjugative plasmid pB4 consists of an IncP-1 beta backbone loaded with a chromate resistance transposon, the strA-strB streptomycin resistance gene pair, the oxacillinase gene bla(NPS-1), and a tripartite antibiotic efflux system of the resistance-nodulation-division family.
Molecular Genetics and Genomics 268(5): 570-584.
PUB
| PDF | DOI | WoS | PubMed | Europe PMC
| GenBank
The 79,370-bp conjugative plasmid pB4 consists of an IncP-1 beta backbone loaded with a chromate resistance transposon, the strA-strB streptomycin resistance gene pair, the oxacillinase gene bla(NPS-1), and a tripartite antibiotic efflux system of the resistance-nodulation-division family.
Molecular Genetics and Genomics 268(5): 570-584.
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773880
Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Pühler A (2003)
GenDB - an open source genome annotation system for prokaryote genomes.
Nucleic Acids Research 31(8): 2187-2195.
PUB
| PDF | DOI | WoS | PubMed | Europe PMC
GenDB - an open source genome annotation system for prokaryote genomes.
Nucleic Acids Research 31(8): 2187-2195.
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1895035
Kalinowski J, Bathe B, Bartels D, Bischoff N, Bott M, Burkovski A, Dusch N, Eggeling L, Eikmanns BJ, Gaigalat L, Goesmann A, Hartmann M, Huthmacher K, Kramer R, Linke B, McHardy AC, Meyer F, Mockel B, Pfefferle W, Pühler A, Rey DA, Rückert C, Rupp O, Sahm H, Wendisch VF, Wiegrabe I, Tauch A (2003)
The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins.
Journal of Biotechnology 104(1-3): 5-25.
PUB | DOI | WoS | PubMed | Europe PMC
| GenBank
The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins.
Journal of Biotechnology 104(1-3): 5-25.