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157 Publikationen

2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2761035
M. Arnold, D. Wibberg, J. Blom, S. Schatschneider, A. Winkler, Y. Kutter, C. Rückert, A. Albersmeier, S. Albaum, A. Goesmann, et al., “Draft Genome Sequence of Pseudomonas aeruginosa Strain WS136, a Highly Cytotoxic ExoS-Positive Wound Isolate Recovered from Pyoderma Gangrenosum”, Genome announcements, 2015, 3.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2719679
J. M. Vinardell, S. Acosta-Jurado, M. Göttfert, S. Zehner, A. Becker, I. Baena-Ropero, J. Blom, J. C. Crespo-Rivas, A. Goesmann, S. Jaenicke, et al., “The Sinorhizobium fredii HH103 genome: a comparative analysis with S. fredii strains differing in their symbiotic behaviour with soybean”, Molecular Plant-Microbe Interactions, 2015, 28, 811-824.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2658539
T. H. M. Smits, V. M. Guerrero-Prieto, G. Hernández-Escarcega, J. Blom, A. Goesmann, F. Rezzonico, B. Duffy, and V. O. Stockwell, “Whole-Genome Sequencing of Erwinia amylovora Strains from Mexico Detects Single Nucleotide Polymorphisms in rpsL Conferring Streptomycin Resistance and in the avrRpt2 Effector Altering Host Interactions”, Genome announcements, 2014, 2.
PUB | DOI | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2694652
A. Bonte, H. Neuweger, A. Goesmann, C. Thonar, P. Mäder, G. Langenkämper, and K. Niehaus, “Metabolite profiling on wheat grain to enable a distinction of samples from organic and conventional farming systems”, Journal of the science of food and agriculture, 2014, 94, 2605-2612.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2690174
G. Christiansen, A. Goesmann, and R. Kurmayer, “Elucidation of insertion elements carried on plasmids and in vitro construction of shuttle vectors from the toxic cyanobacterium planktothrix”, Applied and environmental microbiology, 2014, 80, 4887-4897.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2674387
R. Hilker, K. B. Stadermann, D. Doppmeier, J. Kalinowski, J. Stoye, J. Straube, J. Winnebald, and A. Goesmann, “ReadXplorer - Visualization and Analysis of Mapped Sequences”, Bioinformatics, 2014, 30, 2247-2254.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676552
J. Becker, C. Timmermann, O. Rupp, S. Albaum, K. Brinkrolf, A. Goesmann, A. Pühler, A. Tauch, and T. Noll, “Transcriptome analyses of CHO cells with the next-generation microarray CHO41K: Development and validation by analysing the influence of the growth stimulating substance IGF-1 substitute LongR(3.)”, Journal of biotechnology, 2014, 178, 23-31.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2656773
O. Rupp, J. Becker, K. Brinkrolf, C. Timmermann, N. Borth, A. Pühler, T. Noll, and A. Goesmann, “Construction of a Public CHO Cell Line Transcript Database Using Versatile Bioinformatics Analysis Pipelines”, PLoS ONE, 2014, 9, e85568.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2694682
U. Wegmann, P. Louis, A. Goesmann, B. Henrissat, S. H. Duncan, and H. J. Flint, “Complete genome of a new Firmicutes species belonging to the dominant human colonic microbiota ('Ruminococcus bicirculans') reveals two chromosomes and a selective capacity to utilize plant glucans”, Environmental microbiology, 2014, 16, 2879-2890.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2643946
J. C. Dohm, A. E. Minoche, D. Holtgräwe, S. Capella-Gutiérrez, F. Zakrzewski, H. Tafer, O. Rupp, T. Rosleff Sörensen, R. Stracke, R. Reinhardt, et al., “The genome of the recently domesticated crop plant sugar beet (Beta vulgaris)”, Nature, 2014, 505, 546-549.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2651944
P. Tielen, D. Wibberg, J. Blom, N. Rosin, A. - K. Meyer, B. Bunk, M. Schobert, R. Tüpker, S. Schatschneider, C. Rückert, et al., “Genome Sequence of the Small-Colony Variant Pseudomonas aeruginosa MH27, Isolated from a Chronic Urethral Catheter Infection”, Genome announcements, 2014, 2.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2664976
C. Rückert, R. Szczepanowski, A. Albersmeier, A. Goesmann, N. Fischer, A. Steinkämper, A. Pühler, R. Biener, D. Schwartz, and J. Kalinowski, “Complete Genome Sequence of the Actinobacterium Actinoplanes friuliensis HAG 010964, producer of the lipopeptide antibiotic friulimycin”, Journal of biotechnology, 2014, 178, 41-42.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2555342
P. He, K. Hao, J. Blom, C. Rückert, J. Vater, Z. Mao, Y. Wu, M. Hou, P. He, Y. He, et al., “Genome sequence of the plant growth promoting strain Bacillus amyloliquefaciens subsp. plantarum B9601-Y2 and expression of mersacidin and other secondary metabolites”, Journal of biotechnology, 2013, 164, 281-291.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2552500
S. C. Soares, A. Silva, E. Trost, J. Blom, R. Ramos, A. Carneiro, A. Ali, A. R. Santos, A. C. Pinto, C. Diniz, et al., “The Pan-Genome of the Animal Pathogen Corynebacterium pseudotuberculosis Reveals Differences in Genome Plasticity between the Biovar ovis and equi Strains”, PLoS ONE, 2013, 8, : e53818.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2549908
D. Wibberg, L. Jelonek, O. Rupp, M. Kröber, F. G. Eikmeyer, A. Goesmann, A. Hartmann, R. Borriss, R. Grosch, A. Pühler, et al., “Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14”, Journal of Biotechnology, 2013, 167, 142-155.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2606943
M. Vences, S. Hauswaldt, S. Steinfartz, O. Rupp, A. Goesmann, S. Künzel, P. Orozco-Terwengel, D. R. Vieites, S. Nieto-Roman, S. Haas, et al., “Radically different phylogeographies and patterns of genetic variation in two European brown frogs, genus Rana”, Molecular phylogenetics and evolution, 2013, 68, 657-670.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2602756
T. H. M. Smits, F. Rezzonico, M. M. López, J. Blom, A. Goesmann, J. E. Frey, and B. Duffy, “Phylogenetic position and virulence apparatus of the pear flower necrosis pathogen Erwinia piriflorinigrans CFBP 5888(T) as assessed by comparative genomics”, Systematic and applied microbiology, 2013, 36, 449-456.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2641228
S. Jünemann, F. J. Sedlazeck, K. Prior, A. Albersmeier, U. John, J. Kalinowski, A. Mellmann, A. Goesmann, A. von Haeseler, J. Stoye, et al., “Corrigendum: Updating benchtop sequencing performance comparison”, Nature biotechnology, 2013, 31, 1148.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2637220
H. Wu, J. Qiao, J. Blom, C. Rückert, O. Reva, X. Gao, and R. Borriss, “The Rhizobacterium Bacillus amyloliquefaciens subsp. plantarum NAU-B3 Contains a Large Inversion within the Central Portion of the Genome”, Genome announcements, 2013, 1, e00941-13.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2633427
D. Wibberg, J. Blom, C. Rückert, A. Winkler, A. Albersmeier, A. Pühler, A. Schlüter, and B. E. Scharf, “Draft Genome Sequence of Sinorhizobium meliloti RU11/001, a model organism for flagellum structure, motility and chemotaxis”, Journal of Biotechnology, 2013, 168, 731-733.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2632946
K. A. K. Köhler, C. Rückert, S. Schatschneider, F. - J. Vorhölter, R. Szczepanowski, L. M. Blank, K. Niehaus, A. Goesmann, A. Pühler, J. Kalinowski, et al., “Complete genome sequence of Pseudomonas sp. strain VLB120 a solvent tolerant, styrene degrading bacterium, isolated from forest soil”, Journal of Biotechnology, 2013, 168, 729-730.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2622238
S. Barbe, P. Llop, J. Blom, J. Cabrefiga, A. Goesmann, B. Duffy, E. Montesinos, T. H. M. Smits, and M. M. Lopez, “Complete sequence of Erwinia piriflorinigrans plasmids pEPIR37 and pEPIR5 and role of pEPIR37 in pathogen virulence”, Plant Pathology, 2013, 62, 786-798.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2615581
K. Brinkrolf, O. Rupp, H. Laux, F. Kollin, W. Ernst, B. Linke, R. Kofler, S. Romand, F. Hesse, W. E. Budach, et al., “Chinese hamster genome sequenced from sorted chromosomes”, Nature Biotechnology, 2013, 31, 694-695.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2564601
T. Riedel, L. Gómez-Consarnau, J. Tomasch, M. Martin, M. Jarek, J. M. González, S. Spring, M. Rohlfs, T. Brinkhoff, H. Cypionka, et al., “Genomics and Physiology of a Marine Flavobacterium Encoding a Proteorhodopsin and a Xanthorhodopsin-Like Protein”, PLOS ONE, 2013, 8, e57487.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2558460
A. Roetzer, R. Diel, T. A. Kohl, C. Rückert, U. Nübel, J. Blom, T. Wirth, S. Jaenicke, S. Schuback, S. Rüsch-Gerdes, et al., “Whole Genome Sequencing versus Traditional Genotyping for Investigation of a Mycobacterium tuberculosis Outbreak: A Longitudinal Molecular Epidemiological Study”, PLoS medicine, 2013, 10, e1001387.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560837
M. Fritzenwanker, C. Kuenne, A. Billion, T. Hain, K. Zimmermann, A. Goesmann, T. Chakraborty, and E. Domann, “Complete Genome Sequence of the Probiotic Enterococcus faecalis Symbioflor 1 Clone DSM 16431”, Genome Announcements, 2013, 1, e00165-12.
PUB | DOI | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2576080
J. Toepel, M. Illmer-Kephalides, S. Jaenicke, J. Straube, P. May, A. Goesmann, and O. Kruse, “New insights into Chlamydomonas reinhardtii hydrogen production processes by combined microarray/RNA-seq transcriptomics”, Plant Biotechnology Journal, 2013, 11, 717-733.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2631956
C. Rückert, R. Szczepanowski, A. Albersmeier, A. Goesmann, D. Iftime, E. M. Musiol, K. Blin, W. Wohlleben, A. Pühler, J. Kalinowski, et al., “Complete genome sequence of the kirromycin producer Streptomyces collinus Tü 365 consisting of a linear chromosome and two linear plasmids”, Journal of Biotechnology, 2013, 168, 739-740.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2576539
F. Wichmann, F. - J. Vorhölter, L. Hersemann, F. Widmer, J. Blom, K. Niehaus, S. Reinhard, C. Conradin, and R. Kölliker, “The noncanonical type III secretion system of Xanthomonas translucens pv. graminis is essential for forage grass infection”, Molecular plant pathology, 2013, 14, 576-588.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2635526
D. E. Koeck, D. Wibberg, T. Koellmeier, J. Blom, S. Jaenicke, A. Winkler, A. Albersmeier, V. V. Zverlov, A. Pühler, W. H. Schwarz, et al., “Draft genome sequence of the cellulolytic Clostridium thermocellum wild-type strain BC1 playing a role in cellulosic biomass degradation”, Journal of Biotechnology, 2013, 168, 62-63.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2566922
S. Jünemann, F. J. Sedlazeck, K. Prior, A. Albersmeier, U. John, J. Kalinowski, A. Mellmann, A. Goesmann, A. von Haeseler, J. Stoye, et al., “Updating benchtop sequencing performance comparison”, Nature Biotechnology, 2013, 31, 294-296.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2557779
S. Weidner, B. Baumgarth, M. Göttfert, S. Jaenicke, A. Pühler, S. Schneiker-Bekel, J. Serrania, R. Szczepanowski, and A. Becker, “Genome Sequence of Sinorhizobium meliloti Rm41”, Genome Announcements, 2013, 1, e00013-12.
PUB | DOI | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2557938
R. A. Mann, T. H. M. Smits, A. Bühlmann, J. Blom, A. Goesmann, J. E. Frey, K. M. Plummer, S. V. Beer, J. Luck, B. Duffy, et al., “Comparative Genomics of 12 Strains of Erwinia amylovora Identifies a Pan-Genome with a Large Conserved Core”, PLOS ONE, 2013, 8, e55644.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2561776
C. Trötschel, S. Albaum, and A. Poetsch, “Proteome turnover in bacteria: current status for Corynebacterium glutamicum and related bacteria”, Microbial biotechnology, 2013, 708-719.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2554079
C. Kuenne, A. Billion, M. A. Mraheil, A. Strittmatter, R. Daniel, A. Goesmann, S. Barbuddhe, T. Hain, and T. Chakraborty, “Reassessment of the Listeria monocytogenes pan-genome reveals dynamic integration hotspots and mobile genetic elements as major components of the accessory genome”, BMC Genomics, 2013, 14, 47.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548286
V. M. Luque-Almagro, F. Acera, M. I. Igeño, D. Wibberg, M. D. Roldán, L. P. Sáez, M. Hennig, A. Quesada, M. J. Huertas, J. Blom, et al., “Draft whole genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344”, Environmental Microbiology, 2013, 15, 253-270.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645668 OA
C. Bogen, A. Al-Dilaimi, A. Albersmeier, J. Wichmann, M. Grundmann, O. Rupp, K. J. Lauersen, O. Blifernez-Klassen, J. Kalinowski, A. Goesmann, et al., “Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production”, BMC Genomics, 2013, 14, 926.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2635520
B. Dam, S. Dam, J. Blom, and W. Liesack, “Genome Analysis Coupled with Physiological Studies Reveals a Diverse Nitrogen Metabolism in Methylocystis sp Strain SC2”, Plos One, 2013, 8, e74767.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2610129
N. Kessler, A. Bonte, G. Langenkämper, K. Niehaus, A. Goesmann, and T. W. Nattkemper, “MeltDB 2.0 - Advances of the metabolomics software system”, Bioinformatics, 2013, 29, 2452-2459.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2607974
B. Niu, J. Vater, C. Rückert, J. Blom, M. Lehmann, J. - J. Ru, X. - H. Chen, Q. Wang, and R. Borriss, “Polymyxin P is the active principle in suppressing phytopathogenic Erwinia spp. by the biocontrol rhizobacterium Paenibacillus polymyxa M-1”, BMC microbiology, 2013, 13, 137.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529202
M. Zakrzewski, T. Bekel, C. Ander, A. Pühler, O. Rupp, J. Stoye, A. Schlüter, and A. Goesmann, “MetaSAMS - A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets”, Journal of Biotechnology, 2013, 167, 156-165.
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2013 | Konferenzbeitrag | Im Druck | PUB-ID: 2538625
A. Bonte, N. Kessler, T. W. Nattkemper, A. Goesmann, T. Cecile, P. Mäder, K. Niehaus, and G. Langenkämper, In Press.
PUB
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2484618
M. Zakrzewski, A. Goesmann, S. Jaenicke, S. Jünemann, F. G. Eikmeyer, R. Szczepanowski, W. A. Al-Soud, S. Sørensen, A. Pühler, and A. Schlüter, “Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing”, Journal of Biotechnology, 2012, 158, 248-258.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2473849
S. Weidner, A. Becker, I. Bonilla, S. Jaenicke, J. Lloret, I. Margaret, A. Pühler, J. E. Ruiz-Sainz, S. Schneiker-Bekel, R. Szczepanowski, et al., “Genome Sequence of the Soybean Symbiont Sinorhizobium fredii HH103”, Journal of Bacteriology, 2012, 194, 1617-1618.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500990
M. T. Rose, T. J. Rose, J. Pariasca-Tanaka, T. Yoshihashi, H. Neuweger, A. Goesmann, M. Frei, and M. Wissuwa, “Root metabolic response of rice (Oryza sativa L.) genotypes with contrasting tolerance to zinc deficiency and bicarbonate excess”, Planta, 2012, 236, 959-973.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2471858
L. Ausec, M. Zakrzewski, A. Goesmann, A. Schlüter, and I. Mandic-Mulec, “Correction: bioinformatic analysis reveals high diversity of bacterial genes for laccase-like enzymes”, PLoS ONE, 2012, 7.
PUB | DOI | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2471681
A. Rademacher, M. Zakrzewski, A. Schlüter, M. Schonberg, R. Szczepanowski, A. Goesmann, A. Pühler, and M. Klocke, “Characterization of microbial biofilms in a thermophilic biogas system by high-throughput metagenome sequencing”, FEMS Microbiology Ecology, 2012, 79, 785-799.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2513256
M. Filippini, W. Qi, J. Blom, A. Goesmann, T. H. M. Smits, and H. C. Bagheri, “Genome Sequence of Fibrella aestuarina BUZ 2T, a Filamentous Marine Bacterium”, Journal of bacteriology, 2012, 194, 3555.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498232
C. Trötschel, S. Albaum, D. Wolff, S. Schröder, A. Goesmann, T. W. Nattkemper, and A. Poetsch, “Protein turnover quantification in a multi-labeling approach - from data calculation to evaluation”, Molecular & Cellular Proteomics, 2012, 11, 512-526.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2487853
K. Brankatschk, J. Blom, A. Goesmann, T. H. M. Smits, and B. Duffy, “Comparative genomic analysis of Salmonella enterica subsp. enterica serovar Weltevreden foodborne strains with other serovars”, International journal of food microbiology, 2012, 155, 247-256.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2486204
J. Blom, C. Rückert, B. Niu, Q. Wang, and R. Borriss, “The Complete Genome of Bacillus amyloliquefaciens subsp. plantarum CAU B946 Contains a Gene Cluster for Nonribosomal Synthesis of Iturin A”, Journal of bacteriology, 2012, 194, 1845-1846.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2474002
J. Schneider, O. Rupp, E. Trost, S. Jaenicke, V. Passoth, A. Goesmann, A. Tauch, and K. Brinkrolf, “Genome sequence of Wickerhamomyces anomalus DSM 6766 reveals genetic basis of biotechnologically important antimicrobial activities”, FEMS Yeast Research, 2012, 12, 382-386.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2478526
M. Hackl, V. Jadhav, T. Jakobi, O. Rupp, K. Brinkrolf, A. Goesmann, A. Pühler, T. Noll, N. Borth, and J. Grillari, “Computational identification of microRNA gene loci and precursor microRNA sequences in CHO cell lines”, Journal of Biotechnology, 2012, 158, 151-155.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2405255
M. Persicke, C. Rückert, J. Plassmeier, L. Stutz, N. Kessler, J. Kalinowski, A. Goesmann, and H. Neuweger, “MSEA: metabolite set enrichment analysis in the MeltDB metabolomics software platform: metabolic profiling of Corynebacterium glutamicum as an example”, Metabolomics, 2012, 8, 310-322.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2510984
R. Hilker, C. Sickinger, C. N. S. Pedersen, and J. Stoye, “UniMoG - A unifying framework for genomic distance calculation and sorting based on DCJ”, Bioinformatics, 2012, 28, 2509-2511.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500959
T. Kahlke, A. Goesmann, E. Hjerde, N. P. Willassen, and P. Haugen, “Unique core genomes of the bacterial family vibrionaceae: Insights into niche adaptation and speciation”, BMC genomics, 2012, 13, 179.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500966
T. Hain, R. Ghai, A. Billion, C. T. Kuenne, C. Steinweg, B. Izar, W. Mohamed, M. Mraheil, E. Domann, S. Schaffrath, et al., “Comparative genomics and transcriptomics of lineages I, II, and III strains of Listeria monocytogenes”, BMC Genomics, 2012, 13, 144.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2530487
M. Filippini, W. Qi, S. Jaenicke, A. Goesmann, T. H. M. Smits, and H. C. Bagheri, “Genome Sequence of the Filamentous Bacterium Fibrisoma limi BUZ 3(T)”, Journal of Bacteriology, 2012, 194, 4445.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500937
F. Rezzonico, A. Braun-Kiewnick, R. A. Mann, B. Rodoni, A. Goesmann, B. Duffy, and T. H. M. Smits, “Lipopolysaccharide biosynthesis genes discriminate between Rubus- and Spiraeoideae-infective genotypes of Erwinia amylovora”, Molecular plant pathology, 2012, 13, 975-984.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501081
P. De Maayer, W. Y. Chan, F. Rezzonico, A. Bühlmann, S. N. Venter, J. Blom, A. Goesmann, J. E. Frey, T. H. M. Smits, B. Duffy, et al., “Complete genome sequence of clinical isolate Pantoea ananatis LMG 5342”, Journal of Bacteriology, 2012, 194, 1615-1616.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2530885
K. Brinkrolf, J. Schneider, M. Knecht, C. Rückert, and A. Tauch, “Draft Genome Sequence of Turicella otitidis ATCC 51513, Isolated from Middle Ear Fluid from a Child with Otitis Media”, Journal of Bacteriology, 2012, 194, 5968-5969.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2517230
S. Jünemann, K. Prior, R. Szczepanowski, I. Harks, B. Ehmke, A. Goesmann, J. Stoye, and D. Harmsen, “Bacterial Community Shift in Treated Periodontitis Patients Revealed by Ion Torrent 16S rRNA Gene Amplicon Sequencing”, PLoS ONE, 2012, 7, e41606.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500946
R. A. Mann, J. Blom, A. Bühlmann, K. M. Plummer, S. V. Beer, J. E. Luck, A. Goesmann, J. E. Frey, B. C. Rodoni, B. Duffy, et al., “Comparative analysis of the Hrp pathogenicity island of Rubus- and Spiraeoideae-infecting Erwinia amylovora strains identifies the IT region as a remnant of an integrative conjugative element”, Gene, 2012, 504, 6-12.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300063 OA
S. Albaum, H. Hahne, A. Otto, U. Haußmann, D. Becher, A. Poetsch, A. Goesmann, and T. W. Nattkemper, “A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application study”, Proteome Science, 2011, 9, 30.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2451800 OA
J. Toepel, S. Albaum, S. Arvidsson, A. Goesmann, M. La Russa, K. Rogge, and O. Kruse, “Construction and evaluation of a whole genome microarray of Chlamydomonas reinhardtii”, BMC Genomics, 2011, 12, 579-589.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375634
J. F. Pothier, F. - J. Vorhölter, J. Blom, A. Goesmann, A. Pühler, T. H. Smits, and B. Duffy, “The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis”, FEMS Microbiology Letters, 2011, 323, 52-60.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354731
D. Wibberg, J. Blom, S. Jaenicke, F. Kollin, O. Rupp, B. Scharf, S. Schneiker-Bekel, R. Szczepanowski, A. Goesmann, J. C. Setubal, et al., “Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid”, Journal of Biotechnology, 2011, 155, 50-62.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2317371
A. Küberl, J. Schneider, G. G. Thallinger, I. Anderl, D. Wibberg, T. Hajek, S. Jaenicke, K. Brinkrolf, A. Goesmann, R. Szczepanowski, et al., “High-quality genome sequence of Pichia pastoris CBS7435”, Journal of Biotechnology, 2011, 154, 312-320.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2396576
J. Becker, M. Hackel, T. Jakobi, O. Rupp, J. Schneider, R. Szczepanowski, T. Bekel, N. Borth, A. Goesmann, J. Grillari, et al., “Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing”, Journal of Biotechnology, 2011, 156, 227-235.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289576
V. Thomas, C. Bertelli, F. Collyn, N. Casson, A. Telenti, A. Goesmann, A. Croxatto, and G. Greub, “Lausannevirus, a giant amoebal virus encoding histone doublets”, Environmental Microbiology, 2011, 13, 1454-1466.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2411830
L. Ausec, M. Zakrzewski, A. Goesmann, A. Schlüter, and I. Mandic-Mulec, “Bioinformatic analysis reveals high diversity of bacterial genes for laccase-like enzymes”, PLoS ONE, 2011, 6, : e25724.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326445
J. Schneider, J. Blom, S. Jaenicke, B. Linke, K. Brinkrolf, H. Neuweger, A. Tauch, and A. Goesmann, “RAPYD - Rapid Annotation Platform for Yeast Data”, Journal of Biotechnology, 2011, 155, 118-126.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2307104
T. H. M. Smits, F. Rezzonico, T. Kamber, J. Blom, A. Goesmann, C. A. Ishimaru, J. E. Frey, V. O. Stockwell, and B. Duffy, “Metabolic Versatility and Antibacterial Metabolite Biosynthesis Are Distinguishing Genomic Features of the Fire Blight Antagonist Pantoea vagans C9-1”, PLoS ONE, 2011, 6, e22247.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2447730
J. M. Gonzalez, J. Pinhassi, B. Fernández-Gómez, M. Coll-Llado, M. Gonzalez-Velazquez, P. Puigbo, S. Jaenicke, L. Gomez-Consarnau, A. Fernandez-Guerra, A. Goesmann, et al., “Genomics of the proteorhodopsin-containing marine flavobacterium Dokdonia sp. MED134”, Applied and Environmental Microbiology, 2011, 77, 8676-8686.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326455
E. Krol, J. Blom, J. Winnebald, A. Berhoerster, M. J. Barnett, A. Goesmann, J. Baumbach, and A. Becker, “RhizoRegNet-A database of rhizobial transcription factors and regulatory networks”, Journal of Biotechnology, 2011, 155, 127-134.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2397780
D. Doppmeier, R. Stracke, P. Lutter, A. Goesmann, K. Niehaus, and B. Weisshaar, 2011, p. 218.
PUB
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2290032
B. Joseph, R. F. Schwarz, B. Linke, J. Blom, A. Becker, H. Claus, A. Goesmann, M. Frosch, T. Mueller, U. Vogel, et al., “Virulence Evolution of the Human Pathogen Neisseria meningitidis by Recombination in the Core and Accessory Genome”, PLoS ONE, 2011, 6, e18441.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093389
C. Schoen, J. Weber-Lehmann, J. Blom, B. Joseph, A. Goesmann, A. Strittmatter, and M. Frosch, “Whole-Genome Sequence of the Transformable Neisseria meningitidis Serogroup A Strain WUE2594”, Journal of Bacteriology, 2011, 193, 2064-2065.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289902
T. B. De Gregoris, O. Rupp, S. Klages, F. Knaust, T. Bekel, M. Kube, J. G. Burgess, M. I. Arnone, A. Goesmann, R. Reinhardt, et al., “Deep sequencing of naupliar-, cyprid- and adult-specific normalised Expressed Sequence Tag (EST) libraries of the acorn barnacle Balanus amphitrite”, Biofouling, 2011, 27, 367-374.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289952
J. Blom, T. Jakobi, D. Doppmeier, S. Jaenicke, J. Kalinowski, J. Stoye, and A. Goesmann, “Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming”, Bioinformatics, 2011, 27, 1351-1358.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Im Druck | PUB-ID: 2017892
S. Schneiker-Bekel, D. Wibberg, T. Bekel, J. Blom, B. Linke, H. Neuweger, M. Stiens, F. - J. Vorhölter, S. Weidner, A. Goesmann, et al., “The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome”, Journal of Biotechnology, In Press, 155, 20-33.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003276
S. Jaenicke, C. Ander, T. Bekel, R. Bisdorf, M. Dröge, K. - H. Gartemann, S. Jünemann, O. Kaiser, L. Krause, F. Tille, et al., “Comparative and Joint Analysis of Two Metagenomic Datasets from a Biogas Fermenter Obtained by 454-Pyrosequencing”, PLoS ONE, 2011, 6, e14519.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2087955
M. Hackl, T. Jakobi, J. Blom, D. Doppmeier, K. Brinkrolf, R. Szczepanowski, S. H. Bernhart, C. Höner zu Siederdissen, J. A. H. Bort, M. Wieser, et al., “Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering”, Journal of Biotechnology, 2011, 153, 62-75.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2036058
I. Margaret, A. Becker, J. Blom, I. Bonilla, A. Goesmann, M. Göttfert, J. Lloret, V. Mittard-Runte, C. Rückert, J. - E. Ruiz-Sainz, et al., “Symbiotic properties and first analyses of the genomic sequence of the fast growing model strain Sinorhizobium fredii HH103 nodulating soybean”, Journal of Biotechnology, 2011, 155, 11-19.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093578
B. Linke, R. Giegerich, and A. Goesmann, “Conveyor: a workflow engine for bioinformatic analyses”, Bioinformatics, 2011, 27, 903-911.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093398
K. Brankatschk, J. Blom, A. Goesmann, T. H. M. Smits, and B. Duffy, “Genome of a European Fresh-Vegetable Food Safety Outbreak Strain of Salmonella enterica subsp enterica Serovar Weltevreden”, Journal of Bacteriology, 2011, 193, 2066.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929692
J. Schneider, F. - J. Vorhölter, E. Trost, J. Blom, Y. R. Musa, H. Neuweger, K. Niehaus, S. Schatschneider, A. Tauch, and A. Goesmann, “CARMEN - Comparative Analysis and in silico Reconstruction of organism-specific MEtabolic Networks”, Genetics and Molecular Research, 2010, 9, 1660-1672.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1966439
E. Trost, L. Ott, J. Schneider, J. Schröder, S. Jaenicke, A. Goesmann, P. Husemann, J. Stoye, F. Alves Dorella, F. Souza Rocha, et al., “The complete genome sequence of Corynebacterium pseudotuberculosis FRC41 isolated from a 12-year-old girl with necrotizing lymphadenitis reveals insights into gene-regulatory networks contributing to virulence”, BMC Genomics, 2010, 11, : 728.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1795508
C. Bertelli, F. Collyn, A. Croxatto, C. Rückert, A. Polkinghorne, C. Kebbi-Beghdadi, A. Goesmann, L. Vaughan, and G. Greub, “The Waddlia Genome: A Window into Chlamydial Biology”, PLOS ONE, 2010, 5, e10890.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1795628
T. H. M. Smits, F. Rezzonico, C. Pelludat, A. Goesmann, J. E. Frey, and B. Duffy, “Genomic and phenotypic characterization of a nonpigmented variant of Pantoea vagans biocontrol strain C9-1 lacking the 530-kb megaplasmid pPag3”, FEMS MICROBIOLOGY LETTERS, 2010, 308, 48-54.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785275 OA
E. Trost, S. Götker, J. Schneider, S. Schneiker-Bekel, R. Szczepanowski, A. Tilker, P. Viehöver, W. Arnold, T. Bekel, J. Blom, et al., “Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortion”, BMC Genomics, 2010, 11, : 91.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785504 OA
I. Yang, U. John, S. Beszteri, G. Glöckner, B. Krock, A. Goesmann, and A. D. Cembella, “Comparative gene expression in toxic versus non-toxic strains of the marine dinoflagellate Alexandrium minutum”, BMC Genomics, 2010, 11, 248.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1796445
T. H. M. Smits, F. Rezzonico, T. Kamber, J. Blom, A. Goesmann, J. E. Frey, and B. Duffy, “Complete Genome Sequence of the Fire Blight Pathogen Erwinia amylovora CFBP 1430 and Comparison to Other Erwinia spp.”, MOLECULAR PLANT-MICROBE INTERACTIONS, 2010, 23, 384-393.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 1894907
V. Mittard-Runte, T. Bekel, J. Blom, M. Dondrup, K. Henckel, S. Jaenicke, L. Krause, B. Linke, H. Neuweger, S. Schneiker-Bekel, et al., in Introduction to Marine Genomics (Advances in Marine Genomics) (Eds.: J.M. Cock, K. Tessmar-Raible, C. Boyen, F. Viard), Springer Netherlands, Netherlands, 2010, p. 315-396.
PUB | DOI
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1796644 OA
T. H. M. Smits, S. Jaenicke, F. Rezzonico, T. Kamber, A. Goesmann, J. E. Frey, and B. Duffy, “Complete genome sequence of the fire blight pathogen Erwinia pyrifoliae DSM 12163(T) and comparative genomic insights into plant pathogenicity”, BMC Genomics, 2010, 11, 2.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785579 OA
M. Farnbacher, T. Jahns, D. Willrodt, R. Daniel, R. Haas, A. Goesmann, S. Kurtz, and G. Rieder, “Sequencing, annotation, and comparative genome analysis of the gerbil-adapted Helicobacter pylori strain B8”, BMC Genomics, 2010, 11, 335.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588692
C. Steinweg, C. T. Kuenne, A. Billion, M. A. Mraheil, E. Domann, R. Ghai, S. B. Barbuddhe, U. Kaerst, A. Goesmann, A. Pühler, et al., “Complete Genome Sequence of Listeria seeligeri, a Nonpathogenic Member of the Genus Listeria”, Journal of Bacteriology, 2010, 192, 1473-1474.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1794039
C. Kuenne, S. Voget, J. Pischimarov, S. Oehm, A. Goesmann, R. Daniel, T. Hain, and T. Chakraborty, “Comparative Analysis of Plasmids in the Genus Listeria”, PLOS ONE, 2010, 5, e12511.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1894319 OA
K. Henckel, H. Küster, L. Stutz, and A. Goesmann, “MediPlEx - a tool to combine in silico and experimental gene expression profiles of the model legume Medicago truncatula.”, BMC Research Notes, 2010, 3, 262.
PUB | PDF | DOI | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1968262
T. H. M. Smits, F. Rezzonico, T. Kamber, A. Goesmann, C. A. Ishimaru, V. O. Stockwell, J. E. Frey, and B. Duffy, “Genome Sequence of the Biocontrol Agent Pantoea vagans Strain C9-1”, Journal of Bacteriology, 2010, 192, 6486-6487.
PUB | DOI | WoS | PubMed | Europe PMC
 

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