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84 Publikationen

2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932066 OA
Zurowietz, M.; Langenkämper, D.; Hosking, B.; Ruhl, H.; Nattkemper, T. W. (2018): MAIA - A machine learning assisted image annotation method for environmental monitoring and exploration PLoS ONE,13:(11):e0207498
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2018 | Bielefelder E-Dissertation | PUB-ID: 2919935 OA
Hattab, G. (2018): Analyzing colony dynamics and visualizing cell diversity in spatiotemporal experiments. Bielefeld: Universität Bielefeld.
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2018 | Bielefelder E-Dissertation | PUB-ID: 2930495 OA
Brink, B. (2018): Omics visualization and its application to presymptomatic diagnosis of oral cancer. Bielefeld: Universität Bielefeld.
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2018 | Bielefelder E-Dissertation | PUB-ID: 2931281 OA
Osterloff, J. (2018): Computer Vision for Marine Environmental Monitoring. Bielefeld: Universität Bielefeld.
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2018 | Konferenzbeitrag | Angenommen | PUB-ID: 2921039 OA
Langenkämper, D.; van Kevelaer, R.; Nattkemper, T. W. (Accepted): Strategies for Tackling the Class Imbalance Problem in Marine Image Classification.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909190 OA
Langenkämper, D.; Zurowietz, M.; Schoening, T.; Nattkemper, T. W. (2017): BIIGLE 2.0 - Browsing and Annotating Large Marine Image Collections Frontiers in Marine Science,4:(March):83
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901413 OA
Gorzolka, K.; Kölling, J.; Nattkemper, T. W.; Niehaus, K. (2016): Spatio-Temporal Metabolite Profiling of the Barley Germination Process by MALDI MS Imaging PLOS ONE,11:(3):0150208
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907705
Brink, B.; Seidel, A.; Kleinbölting, N.; Nattkemper, T. W.; Albaum, S. (2016): Omics Fusion - A Platform for Integrative Analysis of Omics Data Journal of Integrative Bioinformatics,13:(4: SI):296
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2014 | Konferenzband | Veröffentlicht | PUB-ID: 2901695
Robert Giegerich; Ralf Hofestädt; Tim Wilhelm Nattkemper (Hrsg.) (2014): German Conference on Bioinformatics 2014, In: Robert Giegerich; Ralf Hofestädt; Tim Wilhelm Nattkemper (Hrsg.), GI-Edition: lecture notes in informatics,235
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2494458 OA
Schoening, T.; Bergmann, M.; Purser, A.; Dannheim, J.; Gutt, J.; Nattkemper, T. W. (2012): Semi-automated image analysis for the assessment of megafaunal densities at the Arctic deep-sea observatory HAUSGARTEN PLoS ONE,7:(6): e38179.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2455753 OA
Raza, S. - E. - A.; Epstein, D.; Nattkemper, T. W.; Rajpoot, N. (2012): RAMTaB: Robust Alignment of Multi-Tag Bioimages PLoS ONE,7:(2): e30894.
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2012 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2515687 OA
Kölling, J.; Rathke, M.; Abouna, S.; Khan, M.; Nattkemper, T. W. (2012): Analyzing Multi-Tag Bioimages with BIOIMAX colocation mining tools.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498232
Trötschel, C.; Albaum, S.; Wolff, D.; Schröder, S.; Goesmann, A.; Nattkemper, T. W.; Poetsch, A. (2012): Protein turnover quantification in a multi-labeling approach - from data calculation to evaluation Molecular & Cellular Proteomics,11:(8): 512-526.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2481783 OA
Kölling, J.; Langenkämper, D.; Sylvie, A.; Michale, K.; Nattkemper, T. W. (2012): WHIDE - A web tool for visual data mining colocation patterns in multivariate bioimages Bioinformatics,28:(8): 1143-1150.
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2012 | Konferenzbeitrag | Im Druck | PUB-ID: 2515596 OA
Nattkemper, T. W. (In Press): Are we ready for Science 2.0?
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2012 | Konferenzbeitrag | PUB-ID: 2515700
Schoening, T.; Bergmann, M.; Boetius, A.; Nattkemper, T. W. (2012): Investigation of hidden parameters influencing the automated object detection in benthic images.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300063 OA
Albaum, S.; Hahne, H.; Otto, A.; Haußmann, U.; Becher, D.; Poetsch, A.; Goesmann, A.; Nattkemper, T. W. (2011): A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application study Proteome Science,9:(1): 30.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300073 OA
Martin, C.; Tauchen, A.; Becker, A.; Nattkemper, T. W. (2011): A Normalized Tree Index for identification of correlated clinical parameters in microarray data BioData Mining,4:(1): 2.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300082 OA
Loyek, C.; Khan, M.; Rajpoot, N.; Nattkemper, T. W. (2011): BIOIMAX - A Web 2.0 approach for easy exploratory and collaborative access to multivariate bioimage data BMC Bioinformatics,12:(1): 297.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300092
Bergmann, M.; Langwald, N.; Ontrup, J.; Soltwedel, T.; Schewe, I.; Klages, M.; Nattkemper, T. W. (2011): Megafaunal assemblages from two shelf stations west of Svalbard Marine Biology Research,7:(6): 525-539.
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2300232 OA
Loyek, C.; Kölling, J.; Langenkämper, D.; Niehaus, K.; Nattkemper, T. W. (2011): A Web2.0 Strategy for the Collaborative Analysis of Complex Bioimages. In: João Gama; Elizabeth Bradley; Jaakko Hollmén (Hrsg.): Advances in Intelligent Data Analysis X: 10th International Symposium, IDA 2011, Porto, Portugal, October 29-31, 2011. Proceedings. Berlin, Heidelberg: Springer. (Lecture Notes in Computer Science, 7014). S. 258-269.
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2300237 OA
Langenkämper, D.; Kölling, J.; Khan, M.; Rajpoot, N.; Nattkemper, T. W. (2011): Towards Protein Network Analysis using TIS Imaging and Exploratory Data Analysis.
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2011 | Konferenzbeitrag | Im Druck | PUB-ID: 2315356
Bergmann, T.; Fiebich, T. M.; Nattkemper, T. W.; Anselmetti, D. (In Press): Categorization of 2-photon microscopy images of human articular cartilage into states of arthritis. Freiburg, Germany.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2373808
Herold, J.; Loyek, C.; Nattkemper, T. W. (2011): Multivariate Image Mining Wiley Interdisciplinary Reviews: DATA MINING AND KNOWLEDGE DISCOVERY,1:(1): 2-13.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300102
Arif, M.; Rajpoot, N.; Technow, U.; Chakraborty, T.; Fisch, N.; Jensen, N. A.; Niehaus, K.; Nattkemper, T. W. (2011): Quantification of Cell Infection Caused by Listeria monocytogenes Invasion Journal of Biotechnology,154:(1): 76-83.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300114
Loyek, C.; Bunkowski, A.; Vautz, W.; Nattkemper, T. W. (2011): Web2.0 paves new ways for collaborative and exploratory analysis of Chemical Compounds in Spectrometry Data Journal of Integrative Bioinformatics,8:(2)
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2323705 OA
Langenkämper, D.; Kölling, J.; Abouna, S.; Khan, M.; Niehaus, K.; Nattkemper, T. W. (2011): TICAL - a web-tool for multivariate image clustering and data topology preserving visualization.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093532
Scherbart, A.; Nattkemper, T. W. (2011): Looking inside self-organizing map ensembles with resampling and negative correlation learning Neural Networks,24:(1): 130-141.
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2300235
Schoening, T.; Hans, V.; Nattkemper, T. W. (2011): Towards improved epilepsia diagnosis by unsupervised segmentation of neuropathology tissue sections using Ripley’s-L features. In: Bildverarbeitung für die Medizin 2011:Algorithmen - Systeme - Anwendungen Proceedings des Workshops vom 20. - 22. März 2011 in Lübeck. Berlin, Heidelberg: Springer. (Informatik aktuell, ). S. 44-48.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929340
Burgemeister, S.; Nattkemper, T. W.; Noll, T.; Hoffrogge, R.; Flaschel, E. (2010): CellViCAM-Cell viability classification for animal cell cultures using dark field micrographs JOURNAL OF BIOTECHNOLOGY,149:(4): 310-316.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1794419
Herold, J.; Zhou, L.; Abouna, S.; Pelengaris, S.; Epstein, D.; Khan, M.; Nattkemper, T. W. (2010): Integrating semantic annotation and information visualization for the analysis of multichannel fluorescence micrographs from pancreatic tissue Computerized Medical Imaging and Graphics,34:(6): 446-452.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929311
Gölzhäuser, A.; Nattkemper, T. W.; Niehaus, K.; Pühler, A.; Sauer, M. (2010): BioImaging: Contributions from biology, physics and informatics Journal of Biotechnology,149:(4): 227-228.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929335
Herold, J.; Schubert, W.; Nattkemper, T. W. (2010): Automated detection and quantification of fluorescently labeled synapses in murine brain tissue sections for high throughput applications JOURNAL OF BIOTECHNOLOGY,149:(4): 299-309.
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018390
Herold, J.; Abouna, S.; Zhou, L.; Pelengaris, S.; Epstein, D. B. A.; Khan, M.; Nattkemper, T. W. (2009): A way towards analyzing high-content bioimage data by means of semantic annotation and visual data mining. In: SPIE Medical Imaging.
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018422
Ontrup, J.; Ehnert, N.; Bergmann, M.; Nattkemper, T. W. (2009): BIIGLE - Web 2.0 enabled labelling and exploring of images from the Arctic deep-sea observatory HAUSGARTEN. In: OCEANS 2009 - Europe. Bremen.
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018427
Qureshi, H.; Rajpoot, N.; Nattkemper, T. W.; Hans, V. (2009): A Robust Adaptive Wavelet-based Method for Classification of Meningioma Histology Images. In: MICCAI«2009 Workshop on Optical Tissue Image Analysis in Microscopy, Histology, and Endoscopy.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635314 OA
Diaz, N. N.; Krause, L.; Goesmann, A.; Niehaus, K.; Nattkemper, T. W. (2009): TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach BMC Bioinformatics,10:(1): 56.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531
Albaum, S.; Neuweger, H.; Fraenzel, B.; Lange, S.; Mertens, D.; Troetschel, C.; Wolters, D.; Kalinowski, J.; Nattkemper, T. W.; Goesmann, A. (2009): Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments Bioinformatics,25:(23): 3128-3134.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588783
Purser, A.; Bergmann, M.; Ontrup, J.; Nattkemper, T. W. (2009): Use of machine-learning algorithms for the automated detection of cold-water coral habitats: a pilot study Marine Ecology Progress Series,397: 241-251.
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1591448
Saalbach, A.; Lange, O.; Nattkemper, T. W.; Meyer-Baese, A. (2009): On the application of (topographic) independent and tree-dependent component analysis for the examination of DCE-MRI data BIOMEDICAL SIGNAL PROCESSING AND CONTROL,4:(3): 247-253.
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018440
Schoening, T.; Ehnert, N.; Ontrup, J.; Nattkemper, T. W. (2009): BIIGLE Tools - A Web 2.0 Approach for Visual Bioimage Database Mining. In: IV 09 - Intl. Conference on Information Visualization.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018405
Loyek, C.; Woermann, F. G.; Nattkemper, T. W. (2008): Detection of Focal Cortical Dysplasia in MRI Using Textural Features. In: Proceedings of BVM 2008. Berlin, Heidelberg: Springer Verlag. S. 432-436.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636280 OA
Timm, W.; Scherbart, A.; Boecker, S.; Kohlbacher, O.; Nattkemper, T. W. (2008): Peak intensity prediction in MALDI-TOF mass spectrometry: A machine learning study to support quantitative proteomics BMC Bioinformatics,9:(1): 443.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585611 OA
Wei, N.; Flaschel, E.; Friehs, K.; Nattkemper, T. W. (2008): A machine vision system for automated non-invasive assessment of cell viability via dark field microscopy, wavelet feature selection and classification BMC Bioinformatics,9:(1): 449.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587052
Martin, C.; Diaz, N. N.; Ontrup, J.; Nattkemper, T. W. (2008): Hyperbolic SOM-based clustering of DNA fragment features for taxonomic visualization and classification Bioinformatics,24:(14): 1568-1574.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588286
Twellmann, T.; Meyer-Baese, A.; Lange, O.; Foo, S.; Nattkemper, T. W. (2008): Model-free visualization of suspicious lesions in breast MRI based on supervised and unsupervised learning ENGINEERING APPLICATIONS OF ARTIFICIAL INTELLIGENCE,21:(2): 129-140.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783364 OA
Krause, L.; Diaz, N. N.; Goesmann, A.; Kelley, S.; Nattkemper, T. W.; Rohwer, F.; Edwards, R. A.; Stoye, J. (2008): Phylogenetic classification of short environmental DNA fragments Nucleic Acids Research,36:(7): 2230-2239.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018409
Martin, C.; Nattkemper, T. W. (2008): A Tree Index to Support Clustering Based Exploratory Data Analysis. In: Bioinformatics Research and Development : Second International Conference, BIRD 2008 Vienna, Austria, July 7-9, 2008 Proceedings. Berlin, Heidelberg: Springer. (Communications in Computer and Information Science, 13). S. 1-15.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018435
Scherbart, A.; Timm, W.; Böcker, S.; Nattkemper, T. W. (2008): Improved Mass Spectrometry Peak Intensity Prediction by Adaptive Feature Weighting. In: International Conference on Neural Information Processing. Auckland, New Zealand.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018381
Albaum, S.; Neuweger, H.; Lange, S.; Mertens, D.; Runte, K.; Kalinowski, J.; Nattkemper, T. W.; Goesmann, A. (2008): ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract). In: HUPO 7th Annual World Congress.
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