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84 Publikationen

2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932066 OA
M. Zurowietz, et al., “MAIA - A machine learning assisted image annotation method for environmental monitoring and exploration ”, PLoS ONE, vol. 13, 2018, : e0207498.
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2018 | Bielefelder E-Dissertation | PUB-ID: 2919935 OA
G. Hattab, Analyzing colony dynamics and visualizing cell diversity in spatiotemporal experiments, Bielefeld: Universität Bielefeld, 2018.
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2018 | Bielefelder E-Dissertation | PUB-ID: 2930495 OA
B. Brink, Omics visualization and its application to presymptomatic diagnosis of oral cancer, Bielefeld: Universität Bielefeld, 2018.
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2018 | Bielefelder E-Dissertation | PUB-ID: 2931281 OA
J. Osterloff, Computer Vision for Marine Environmental Monitoring, Bielefeld: Universität Bielefeld, 2018.
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2018 | Konferenzbeitrag | Angenommen | PUB-ID: 2921039 OA
D. Langenkämper, R. van Kevelaer, and T.W. Nattkemper, “Strategies for Tackling the Class Imbalance Problem in Marine Image Classification”, Presented at the International Conference on Pattern Recognition 2018, Computer Vision for Automated Analysis of Underwater Imagery Workshop, Beijing, Accepted.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909190 OA
D. Langenkämper, et al., “BIIGLE 2.0 - Browsing and Annotating Large Marine Image Collections”, Frontiers in Marine Science, vol. 4, 2017, : 83.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901413 OA
K. Gorzolka, et al., “Spatio-Temporal Metabolite Profiling of the Barley Germination Process by MALDI MS Imaging”, PLOS ONE, vol. 11, 2016, : 0150208.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907705
B. Brink, et al., “Omics Fusion - A Platform for Integrative Analysis of Omics Data”, Journal of Integrative Bioinformatics, vol. 13, 2016, : 296.
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2014 | Konferenzband | Veröffentlicht | PUB-ID: 2901695
R. Giegerich, R. Hofestädt, and T.W. Nattkemper, eds., “German Conference on Bioinformatics 2014”, GI-Edition: lecture notes in informatics, vol. 235, 2014.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2494458 OA
T. Schoening, et al., “Semi-automated image analysis for the assessment of megafaunal densities at the Arctic deep-sea observatory HAUSGARTEN”, PLoS ONE, vol. 7, 2012, pp. e38179.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2455753 OA
S.-E.-A. Raza, et al., “RAMTaB: Robust Alignment of Multi-Tag Bioimages”, PLoS ONE, vol. 7, 2012, pp. e30894.
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2012 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2515687 OA
J. Kölling, et al., “Analyzing Multi-Tag Bioimages with BIOIMAX colocation mining tools”, Presented at the IEEE International Symposium on BIOMEDICAL IMAGING (ISBI), Barcelona, 2012.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498232
C. Trötschel, et al., “Protein turnover quantification in a multi-labeling approach - from data calculation to evaluation”, Molecular & Cellular Proteomics, vol. 11, 2012, pp. 512-526.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2481783 OA
J. Kölling, et al., “WHIDE - A web tool for visual data mining colocation patterns in multivariate bioimages”, Bioinformatics, vol. 28, 2012, pp. 1143-1150.
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2012 | Konferenzbeitrag | Im Druck | PUB-ID: 2515596 OA
T.W. Nattkemper, “Are we ready for Science 2.0?”, Presented at the 4th International Conference on Knowledge Management and Information Sharing (KMIS), Barcelona, In Press.
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2012 | Konferenzbeitrag | PUB-ID: 2515700
T. Schoening, et al., “Investigation of hidden parameters influencing the automated object detection in benthic images”, Presented at the IEEE OCEANS 2012 MTS/IEEE, Hampton Roads, Virginia, USA, 2012.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300063 OA
S. Albaum, et al., “A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application study”, Proteome Science, vol. 9, 2011, pp. 30.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300073 OA
C. Martin, et al., “A Normalized Tree Index for identification of correlated clinical parameters in microarray data”, BioData Mining, vol. 4, 2011, pp. 2.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300082 OA
C. Loyek, et al., “BIOIMAX - A Web 2.0 approach for easy exploratory and collaborative access to multivariate bioimage data”, BMC Bioinformatics, vol. 12, 2011, pp. 297.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300092
M. Bergmann, et al., “Megafaunal assemblages from two shelf stations west of Svalbard”, Marine Biology Research, vol. 7, 2011, pp. 525-539.
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2300232 OA
C. Loyek, et al., “A Web2.0 Strategy for the Collaborative Analysis of Complex Bioimages”, Advances in Intelligent Data Analysis X: 10th International Symposium, IDA 2011, Porto, Portugal, October 29-31, 2011. Proceedings, J. Gama, E. Bradley, and J. Hollmén, eds., Lecture Notes in Computer Science, vol. 7014, Berlin, Heidelberg: Springer, 2011, pp.258-269.
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2300237 OA
D. Langenkämper, et al., “Towards Protein Network Analysis using TIS Imaging and Exploratory Data Analysis”, Presented at the Workshop on Computational Systems Biology (WCSB), Zürich, Switzerland, 2011.
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2011 | Konferenzbeitrag | Im Druck | PUB-ID: 2315356
T. Bergmann, et al., “Categorization of 2-photon microscopy images of human articular cartilage into states of arthritis”, Presented at the Tagung der Biomedizinischen Technik (BMT), Freiburg, Germany, Freiburg, Germany: In Press.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2373808
J. Herold, C. Loyek, and T.W. Nattkemper, “Multivariate Image Mining”, Wiley Interdisciplinary Reviews: DATA MINING AND KNOWLEDGE DISCOVERY, vol. 1, 2011, pp. 2-13.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300102
M. Arif, et al., “Quantification of Cell Infection Caused by Listeria monocytogenes Invasion”, Journal of Biotechnology, vol. 154, 2011, pp. 76-83.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300114
C. Loyek, et al., “Web2.0 paves new ways for collaborative and exploratory analysis of Chemical Compounds in Spectrometry Data”, Journal of Integrative Bioinformatics, vol. 8, 2011.
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2323705 OA
D. Langenkämper, et al., “TICAL - a web-tool for multivariate image clustering and data topology preserving visualization”, Presented at the Microscopic Image Analysis with Applications in Biology (MIAAB), Heidelberg, Germany, 2011.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093532
A. Scherbart and T.W. Nattkemper, “Looking inside self-organizing map ensembles with resampling and negative correlation learning”, Neural Networks, vol. 24, 2011, pp. 130-141.
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2300235
T. Schoening, V. Hans, and T.W. Nattkemper, “Towards improved epilepsia diagnosis by unsupervised segmentation of neuropathology tissue sections using Ripley’s-L features”, Bildverarbeitung für die Medizin 2011:Algorithmen - Systeme - Anwendungen Proceedings des Workshops vom 20. - 22. März 2011 in Lübeck, Informatik aktuell, Berlin, Heidelberg: Springer, 2011, pp.44-48.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929340
S. Burgemeister, et al., “CellViCAM-Cell viability classification for animal cell cultures using dark field micrographs”, JOURNAL OF BIOTECHNOLOGY, vol. 149, 2010, pp. 310-316.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1794419
J. Herold, et al., “Integrating semantic annotation and information visualization for the analysis of multichannel fluorescence micrographs from pancreatic tissue”, Computerized Medical Imaging and Graphics, vol. 34, 2010, pp. 446-452.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929311
A. Gölzhäuser, et al., “BioImaging: Contributions from biology, physics and informatics”, Journal of Biotechnology, vol. 149, 2010, pp. 227-228.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929335
J. Herold, W. Schubert, and T.W. Nattkemper, “Automated detection and quantification of fluorescently labeled synapses in murine brain tissue sections for high throughput applications”, JOURNAL OF BIOTECHNOLOGY, vol. 149, 2010, pp. 299-309.
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018390
J. Herold, et al., “A way towards analyzing high-content bioimage data by means of semantic annotation and visual data mining”, SPIE Medical Imaging, 2009.
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018422
J. Ontrup, et al., “BIIGLE - Web 2.0 enabled labelling and exploring of images from the Arctic deep-sea observatory HAUSGARTEN”, OCEANS 2009 - Europe, Bremen: 2009.
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018427
H. Qureshi, et al., “A Robust Adaptive Wavelet-based Method for Classification of Meningioma Histology Images”, MICCAI«2009 Workshop on Optical Tissue Image Analysis in Microscopy, Histology, and Endoscopy, 2009.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635314 OA
N.N. Diaz, et al., “TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach”, BMC Bioinformatics, vol. 10, 2009, pp. 56.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531
S. Albaum, et al., “Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments”, Bioinformatics, vol. 25, 2009, pp. 3128-3134.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588783
A. Purser, et al., “Use of machine-learning algorithms for the automated detection of cold-water coral habitats: a pilot study”, Marine Ecology Progress Series, vol. 397, 2009, pp. 241-251.
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1591448
A. Saalbach, et al., “On the application of (topographic) independent and tree-dependent component analysis for the examination of DCE-MRI data”, BIOMEDICAL SIGNAL PROCESSING AND CONTROL, vol. 4, 2009, pp. 247-253.
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018440
T. Schoening, et al., “BIIGLE Tools - A Web 2.0 Approach for Visual Bioimage Database Mining”, IV 09 - Intl. Conference on Information Visualization, 2009.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018405
C. Loyek, F.G. Woermann, and T.W. Nattkemper, “Detection of Focal Cortical Dysplasia in MRI Using Textural Features”, Proceedings of BVM 2008, Berlin, Heidelberg: Springer Verlag, 2008, pp.432-436.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636280 OA
W. Timm, et al., “Peak intensity prediction in MALDI-TOF mass spectrometry: A machine learning study to support quantitative proteomics”, BMC Bioinformatics, vol. 9, 2008, pp. 443.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585611 OA
N. Wei, et al., “A machine vision system for automated non-invasive assessment of cell viability via dark field microscopy, wavelet feature selection and classification”, BMC Bioinformatics, vol. 9, 2008, pp. 449.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587052
C. Martin, et al., “Hyperbolic SOM-based clustering of DNA fragment features for taxonomic visualization and classification”, Bioinformatics, vol. 24, 2008, pp. 1568-1574.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588286
T. Twellmann, et al., “Model-free visualization of suspicious lesions in breast MRI based on supervised and unsupervised learning”, ENGINEERING APPLICATIONS OF ARTIFICIAL INTELLIGENCE, vol. 21, 2008, pp. 129-140.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783364 OA
L. Krause, et al., “Phylogenetic classification of short environmental DNA fragments”, Nucleic Acids Research, vol. 36, 2008, pp. 2230-2239.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018409
C. Martin and T.W. Nattkemper, “A Tree Index to Support Clustering Based Exploratory Data Analysis”, Bioinformatics Research and Development : Second International Conference, BIRD 2008 Vienna, Austria, July 7-9, 2008 Proceedings, Communications in Computer and Information Science, vol. 13, Berlin, Heidelberg: Springer, 2008, pp.1-15.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018435
A. Scherbart, et al., “Improved Mass Spectrometry Peak Intensity Prediction by Adaptive Feature Weighting”, International Conference on Neural Information Processing, Auckland, New Zealand: 2008.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018381
S. Albaum, et al., “ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract)”, HUPO 7th Annual World Congress, 2008.
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