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84 Publikationen

2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1794419
Herold, J., Zhou, L., Abouna, S., Pelengaris, S., Epstein, D., Khan, M., and Nattkemper, T. W. (2010). Integrating semantic annotation and information visualization for the analysis of multichannel fluorescence micrographs from pancreatic tissue. Computerized Medical Imaging and Graphics 34, 446-452.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929311
Gölzhäuser, A., Nattkemper, T. W., Niehaus, K., Pühler, A., and Sauer, M. (2010). BioImaging: Contributions from biology, physics and informatics. Journal of Biotechnology 149, 227-228.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929335
Herold, J., Schubert, W., and Nattkemper, T. W. (2010). Automated detection and quantification of fluorescently labeled synapses in murine brain tissue sections for high throughput applications. JOURNAL OF BIOTECHNOLOGY 149, 299-309.
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018390
Herold, J., Abouna, S., Zhou, L., Pelengaris, S., Epstein, D. B. A., Khan, M., and Nattkemper, T. W. (2009). “A way towards analyzing high-content bioimage data by means of semantic annotation and visual data mining” in SPIE Medical Imaging.
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018422
Ontrup, J., Ehnert, N., Bergmann, M., and Nattkemper, T. W. (2009). “BIIGLE - Web 2.0 enabled labelling and exploring of images from the Arctic deep-sea observatory HAUSGARTEN” in OCEANS 2009 - Europe (Bremen).
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018427
Qureshi, H., Rajpoot, N., Nattkemper, T. W., and Hans, V. (2009). “A Robust Adaptive Wavelet-based Method for Classification of Meningioma Histology Images” in MICCAI«2009 Workshop on Optical Tissue Image Analysis in Microscopy, Histology, and Endoscopy.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635314 OA
Diaz, N. N., Krause, L., Goesmann, A., Niehaus, K., and Nattkemper, T. W. (2009). TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach. BMC Bioinformatics 10, 56.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531
Albaum, S., Neuweger, H., Fraenzel, B., Lange, S., Mertens, D., Troetschel, C., Wolters, D., Kalinowski, J., Nattkemper, T. W., and Goesmann, A. (2009). Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments. Bioinformatics 25, 3128-3134.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588783
Purser, A., Bergmann, M., Ontrup, J., and Nattkemper, T. W. (2009). Use of machine-learning algorithms for the automated detection of cold-water coral habitats: a pilot study. Marine Ecology Progress Series 397, 241-251.
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1591448
Saalbach, A., Lange, O., Nattkemper, T. W., and Meyer-Baese, A. (2009). On the application of (topographic) independent and tree-dependent component analysis for the examination of DCE-MRI data. BIOMEDICAL SIGNAL PROCESSING AND CONTROL 4, 247-253.
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018440
Schoening, T., Ehnert, N., Ontrup, J., and Nattkemper, T. W. (2009). “BIIGLE Tools - A Web 2.0 Approach for Visual Bioimage Database Mining” in IV 09 - Intl. Conference on Information Visualization.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018405
Loyek, C., Woermann, F. G., and Nattkemper, T. W. (2008). “Detection of Focal Cortical Dysplasia in MRI Using Textural Features” in Proceedings of BVM 2008 (Berlin, Heidelberg: Springer Verlag), 432-436.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636280 OA
Timm, W., Scherbart, A., Boecker, S., Kohlbacher, O., and Nattkemper, T. W. (2008). Peak intensity prediction in MALDI-TOF mass spectrometry: A machine learning study to support quantitative proteomics. BMC Bioinformatics 9, 443.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585611 OA
Wei, N., Flaschel, E., Friehs, K., and Nattkemper, T. W. (2008). A machine vision system for automated non-invasive assessment of cell viability via dark field microscopy, wavelet feature selection and classification. BMC Bioinformatics 9, 449.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587052
Martin, C., Diaz, N. N., Ontrup, J., and Nattkemper, T. W. (2008). Hyperbolic SOM-based clustering of DNA fragment features for taxonomic visualization and classification. Bioinformatics 24, 1568-1574.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588286
Twellmann, T., Meyer-Baese, A., Lange, O., Foo, S., and Nattkemper, T. W. (2008). Model-free visualization of suspicious lesions in breast MRI based on supervised and unsupervised learning. ENGINEERING APPLICATIONS OF ARTIFICIAL INTELLIGENCE 21, 129-140.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783364 OA
Krause, L., Diaz, N. N., Goesmann, A., Kelley, S., Nattkemper, T. W., Rohwer, F., Edwards, R. A., and Stoye, J. (2008). Phylogenetic classification of short environmental DNA fragments. Nucleic Acids Research 36, 2230-2239.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018409
Martin, C., and Nattkemper, T. W. (2008). “A Tree Index to Support Clustering Based Exploratory Data Analysis” in Bioinformatics Research and Development : Second International Conference, BIRD 2008 Vienna, Austria, July 7-9, 2008 Proceedings Communications in Computer and Information Science, vol. 13, (Berlin, Heidelberg: Springer), 1-15.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018435
Scherbart, A., Timm, W., Böcker, S., and Nattkemper, T. W. (2008). “Improved Mass Spectrometry Peak Intensity Prediction by Adaptive Feature Weighting” in International Conference on Neural Information Processing (Auckland, New Zealand).
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018381
Albaum, S., Neuweger, H., Lange, S., Mertens, D., Runte, K., Kalinowski, J., Nattkemper, T. W., and Goesmann, A. (2008). “ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract)” in HUPO 7th Annual World Congress.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018398
Herold, J., Friedenberger, M., Bode, M., Rajpoot, N., Schubert, W., and Nattkemper, T. W. (2008). “Flexible Synapse Detection in Fluorescence Micrographs by Modeling Human Expert Grading” in Proc. of 2008 IEEE International Symposium on Biomedical Imaging.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018432
Scherbart, A., and Nattkemper, T. W. (2008). “The Diversity of Regression Ensembles Combining Bagging and Random Subspace Method” in International Conference on Neural Information Processing.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1630738
Pobigaylo, N., Szymczak, S., Nattkemper, T. W., and Becker, A. (2008). Identification of genes relevant to symbiosis and competitiveness in Sinorhizobium meliloti using signature-tagged mutants. MOLECULAR PLANT-MICROBE INTERACTIONS 21, 219-231.
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2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018412
Martin, C., Díaz Solórzano, N. N., Ontrup, J., and Nattkemper, T. W. (2007). “Genome feature exploration using hyperbolic Self-Organizing Maps” in Proceedings of the 6th International Workshop on Self-Organizing Maps (WSOM 2007) (Bielefeld: Bielefeld University).
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1595739
Wei, N., You, J., Friehs, K., Flaschel, E., and Nattkemper, T. W. (2007). In situ dark field microscopy for on-line monitoring of yeast cultures. BIOTECHNOLOGY LETTERS 29, 373-378.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593120
Wei, N., You, J., Friehs, K., Flaschel, E., and Nattkemper, T. W. (2007). An in situ probe for on-line monitoring of cell density and viability on the basis of dark field microscopy in conjunction with image processing and supervised machine learning. Biotechnology and Bioengineering 97, 1489-1500.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1630749
Lessmann, B., Nattkemper, T. W., Hans, V. H., and Degenhard, A. (2007). A method for linking computed image features to histological semantics in neuropathology. Journal of Biomedical Informatics 40, 631-641.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783345 OA
Krause, L., McHardy, A. C., Nattkemper, T. W., Pühler, A., Stoye, J., and Meyer, F. (2007). GISMO - gene identification using a support vector machine for ORF classification. Nucleic Acids Research 35, 540-549.
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2007 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2018416
Nattkemper, T. W., Degenhard, A., and Twellmann, T. (2007). “Breas” in Cancer Imaging - Lung and breast carcinomas, Hayat, M. A. ed., vol. 1, (Academic Press), 309-324.
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2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2374232
Varini, C., Lessmann, B., Degenhard, A., Hans, V. H., and Nattkemper, T. W. (2006). “Visual Exploration of Pathology Images by a Discrete Wavelet Transform Preprocessed Locally Linear Embedding.” in Bildverarbeitung für die Medizin, Handels, H., Ehrhardt, J., Horsch, A., Meinzer, H. - P., and Tolxdorff, T. eds. (Springer), 66-70.
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2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2374254
Lessmann, B., Nattkemper, T. W., Huth, J., Loyek, C., Kessar, P., Khazen, M., Pointon, L., Leach, M. O., and Degenhard, A. (2006). “Content Based Image Retrieval for Dynamic Time Series Data” in Proceedings of BVM 61-65.
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2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2374494
Timm, W., Böcker, S., Twellmann, T., and Nattkemper, T. W. (2006). “Peak intensity prediction for pmf mass spectra using support vector regression” in Proc. of the 7th International FLINS Conference on Applied Artificial Intelligence 565-572.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1600329
Miksch, G., Bettenworth, F., Friehs, K., Flaschel, E., Saalbach, A., and Nattkemper, T. W. (2006). A rapid reporter system using GFP as a reporter protein for identification and screening of synthetic stationary-phase promoters in Escherichia coli. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 70, 229-236.
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2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1597259
Martin, C., Deters, H. grosse, and Nattkemper, T. W. (2006). “Fusing biomedical multi-modal data for exploratory data analysis” in ARTIFICIAL NEURAL NETWORKS - ICANN 2006, PT 2, vol. 4132, (SPRINGER-VERLAG BERLIN), 798-807.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598838
Pobigaylo, N., Wetter, D., Szymczak, S., Schiller, U., Kurtz, S., Meyer, F., Nattkemper, T. W., and Becker, A. (2006). Construction of a large signature-tagged mini-Tn5 transposon library and its application to mutagenesis of Sinorhizobium meliloti. APPLIED AND ENVIRONMENTAL MICROBIOLOGY 72, 4329-4337.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596731
Varini, C., Degenhard, A., and Nattkemper, T. W. (2006). Visual exploratory analysis of DCE-MRI data in breast cancer by dimensional data reduction: A comparative study. BIOMEDICAL SIGNAL PROCESSING AND CONTROL 1, 56-63.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598535
Varini, C., Degenhard, A., and Nattkemper, T. W. (2006). ISOLLE: LLE with geodesic distance. NEUROCOMPUTING 69, 1768-1771.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603560
Nattkemper, T. W., Arnrich, B., Lichte, O., Timm, W., Degenhard, A., Pointon, L., Hayes, C., and Leach, M. O. (2005). Evaluation of radiological features for breast tumour classification in clinical screening with machine learning methods. ARTIFICIAL INTELLIGENCE IN MEDICINE 34, 129-139.
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2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2374546
Saalbach, A., Twellmann, T., Nattkemper, T. W., Wismüller, A., Ontrup, J., and Ritter, H. (2005). “A hyperbolic topographic mapping for proximity data” in Proc. of the IASTED International Conference of Artificial Intelligence and Applications, vol. 2005, 106-111.
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2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2374666
Twellmann, T., Lichte, O., Saalbach, A., Wismüller, A., and Nattkemper, T. W. (2005).“An Adaptive Colour Scale for Comparison of Pseudo Colouring Techniques for DCE-MRI Data”. Presented at the Workshop für Bildverarbeiteung für die Medzin.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2374187
Saalbach, A., Ontrup, J., Ritter, H., and Nattkemper, T. W. (2005). Image fusion based on topographic mappings using the hyperbolic space. Information Visualization 4, 266-275.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603030
Nattkemper, T. W., and Wismuller, A. (2005). Tumor feature visualization with unsupervised learning. MEDICAL IMAGE ANALYSIS 9, 344-351.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1946602
Wei, N., Flaschel, E., Saalbach, A., Twellmann, T., and Nattkemper, T. W. (2005). Reagent-free automatic cell viability determination using neural networks based machine vision and dark-field microscopy in Saccharomyces cerevisiae. Conf Proc IEEE Eng Med Biol Soc 6.
PUB | DOI | PubMed | Europe PMC
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602344
Prank, K., Schulze, E., Eckert, O., Nattkemper, T. W., Bettendorf, M., Maser-Gluth, C., Sejnowski, T. J., Grote, A., Penner, E., von zur Muhlen, A., et al. (2005). Machine learning approaches for phenotype-genotype mapping: predicting heterozygous mutations in the CYP21B gene from steroid profiles. EUROPEAN JOURNAL OF ENDOCRINOLOGY 153, 301-305.
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2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1601519
Varini, C., Degenhard, A., and Nattkemper, T. W. (2005). “ISOLLE: Locally linear embedding with geodesic distance” in KNOWLEDGE DISCOVERY IN DATABASES: PKDD 2005, vol. 3721, (SPRINGER-VERLAG BERLIN), 331-342.
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2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1601848
Miksch, G., Bettenworth, F., Friehs, K., Flaschel, E., Saalbach, A., Twellmann, T., and Nattkemper, T. W. (2005). Libraries of synthetic stationary-phase and stress promoters as a tool for fine-tuning of expression of recombinant proteins in Escherichia coli. JOURNAL OF BIOTECHNOLOGY 120, 25-37.
PUB | DOI | WoS | PubMed | Europe PMC
 
2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1601906
Lessmann, B., Degenhard, A., Kessar, P., Pointon, L., Khazen, M., Leach, M. O., and Nattkemper, T. W. (2005). “SOM-based wavelet filtering for the exploration of medical images” in ARTIFICIAL NEURAL NETWORKS: BIOLOGICAL INSPIRATIONS - ICANN 2005, PT 1, PROCEEDINGS, vol. 3696, (SPRINGER-VERLAG BERLIN), 671-676.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602177
Twellmann, T., Lichte, O., and Nattkemper, T. W. (2005). An adaptive tissue characterization network for model-free visualization of dynamic contrast-enhanced magnetic resonance image data. IEEE TRANSACTIONS ON MEDICAL IMAGING 24, 1256-1266.
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2004 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2375262
Varini, C., Nattkemper, T. W., Degenhard, A., and Wismüller, A. (2004). “Visualisation of Breast Tumour DCE-MRI Data using LLE” in Proc. Medical Image Understanding and Analysis (MIUA) (BMVA), 97-100.
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606041
Nattkemper, T. W. (2004). Multivariate image analysis in biomedicine. JOURNAL OF BIOMEDICAL INFORMATICS 37, 380-391.
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