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84 Publikationen

2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932066 OA
Zurowietz, M., Langenkämper, D., Hosking, B., Ruhl, H., & Nattkemper, T. W. (2018). MAIA - A machine learning assisted image annotation method for environmental monitoring and exploration . PLoS ONE, 13(11), e0207498. doi:10.1371/journal.pone.0207498
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2018 | Bielefelder E-Dissertation | PUB-ID: 2919935 OA
Hattab, G. (2018). Analyzing colony dynamics and visualizing cell diversity in spatiotemporal experiments. Bielefeld: Universität Bielefeld.
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2018 | Bielefelder E-Dissertation | PUB-ID: 2930495 OA
Brink, B. (2018). Omics visualization and its application to presymptomatic diagnosis of oral cancer. Bielefeld: Universität Bielefeld. doi:10.4119/unibi/2930495
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2018 | Bielefelder E-Dissertation | PUB-ID: 2931281 OA
Osterloff, J. (2018). Computer Vision for Marine Environmental Monitoring. Bielefeld: Universität Bielefeld. doi:10.4119/unibi/2931281
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2018 | Konferenzbeitrag | Angenommen | PUB-ID: 2921039 OA
Langenkämper, D., van Kevelaer, R., & Nattkemper, T. W. (Accepted). Strategies for Tackling the Class Imbalance Problem in Marine Image Classification. Presented at the International Conference on Pattern Recognition 2018, Computer Vision for Automated Analysis of Underwater Imagery Workshop, Beijing.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909190 OA
Langenkämper, D., Zurowietz, M., Schoening, T., & Nattkemper, T. W. (2017). BIIGLE 2.0 - Browsing and Annotating Large Marine Image Collections. Frontiers in Marine Science, 4(March), 83. doi:10.3389/fmars.2017.00083
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901413 OA
Gorzolka, K., Kölling, J., Nattkemper, T. W., & Niehaus, K. (2016). Spatio-Temporal Metabolite Profiling of the Barley Germination Process by MALDI MS Imaging. PLOS ONE, 11(3), 0150208. doi:10.1371/journal.pone.0150208
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907705
Brink, B., Seidel, A., Kleinbölting, N., Nattkemper, T. W., & Albaum, S. (2016). Omics Fusion - A Platform for Integrative Analysis of Omics Data. Journal of Integrative Bioinformatics, 13(4: SI), 296. doi:10.2390/biecoll-jib-2016-296
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2014 | Konferenzband | Veröffentlicht | PUB-ID: 2901695
Giegerich R., Hofestädt R., & Nattkemper T. W. (Eds.) (2014). German Conference on Bioinformatics 2014. GI-Edition: lecture notes in informatics, 235
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2494458 OA
Schoening, T., Bergmann, M., Purser, A., Dannheim, J., Gutt, J., & Nattkemper, T. W. (2012). Semi-automated image analysis for the assessment of megafaunal densities at the Arctic deep-sea observatory HAUSGARTEN. PLoS ONE, 7(6), e38179. doi:10.1371/journal.pone.0038179
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2455753 OA
Raza, S. - E. - A., Epstein, D., Nattkemper, T. W., & Rajpoot, N. (2012). RAMTaB: Robust Alignment of Multi-Tag Bioimages. PLoS ONE, 7(2), e30894. doi:10.1371/journal.pone.0030894
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2012 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2515687 OA
Kölling, J., Rathke, M., Abouna, S., Khan, M., & Nattkemper, T. W. (2012). Analyzing Multi-Tag Bioimages with BIOIMAX colocation mining tools. Presented at the IEEE International Symposium on BIOMEDICAL IMAGING (ISBI), Barcelona.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498232
Trötschel, C., Albaum, S., Wolff, D., Schröder, S., Goesmann, A., Nattkemper, T. W., & Poetsch, A. (2012). Protein turnover quantification in a multi-labeling approach - from data calculation to evaluation. Molecular & Cellular Proteomics, 11(8), 512-526. doi:10.1074/mcp.M111.014134
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2481783 OA
Kölling, J., Langenkämper, D., Sylvie, A., Michale, K., & Nattkemper, T. W. (2012). WHIDE - A web tool for visual data mining colocation patterns in multivariate bioimages. Bioinformatics, 28(8), 1143-1150. doi:10.1093/bioinformatics/bts104
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2012 | Konferenzbeitrag | Im Druck | PUB-ID: 2515596 OA
Nattkemper, T. W. (In Press). Are we ready for Science 2.0?. Presented at the 4th International Conference on Knowledge Management and Information Sharing (KMIS), Barcelona.
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2012 | Konferenzbeitrag | PUB-ID: 2515700
Schoening, T., Bergmann, M., Boetius, A., & Nattkemper, T. W. (2012). Investigation of hidden parameters influencing the automated object detection in benthic images. Presented at the IEEE OCEANS 2012 MTS/IEEE, Hampton Roads, Virginia, USA.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300063 OA
Albaum, S., Hahne, H., Otto, A., Haußmann, U., Becher, D., Poetsch, A., Goesmann, A., et al. (2011). A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application study. Proteome Science, 9(1), 30. doi:10.1186/1477-5956-9-30
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300073 OA
Martin, C., Tauchen, A., Becker, A., & Nattkemper, T. W. (2011). A Normalized Tree Index for identification of correlated clinical parameters in microarray data. BioData Mining, 4(1), 2. doi:10.1186/1756-0381-4-2
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300082 OA
Loyek, C., Khan, M., Rajpoot, N., & Nattkemper, T. W. (2011). BIOIMAX - A Web 2.0 approach for easy exploratory and collaborative access to multivariate bioimage data. BMC Bioinformatics, 12(1), 297. doi:10.1186/1471-2105-12-297
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300092
Bergmann, M., Langwald, N., Ontrup, J., Soltwedel, T., Schewe, I., Klages, M., & Nattkemper, T. W. (2011). Megafaunal assemblages from two shelf stations west of Svalbard. Marine Biology Research, 7(6), 525-539. doi:10.1080/17451000.2010.535834
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2300232 OA
Loyek, C., Kölling, J., Langenkämper, D., Niehaus, K., & Nattkemper, T. W. (2011). A Web2.0 Strategy for the Collaborative Analysis of Complex Bioimages. In J. Gama, E. Bradley, & J. Hollmén (Eds.), Lecture Notes in Computer Science: Vol. 7014. Advances in Intelligent Data Analysis X: 10th International Symposium, IDA 2011, Porto, Portugal, October 29-31, 2011. Proceedings (pp. 258-269). Berlin, Heidelberg: Springer. doi:10.1007/978-3-642-24800-9_25
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2300237 OA
Langenkämper, D., Kölling, J., Khan, M., Rajpoot, N., & Nattkemper, T. W. (2011). Towards Protein Network Analysis using TIS Imaging and Exploratory Data Analysis. Presented at the Workshop on Computational Systems Biology (WCSB), Zürich, Switzerland.
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2011 | Konferenzbeitrag | Im Druck | PUB-ID: 2315356
Bergmann, T., Fiebich, T. M., Nattkemper, T. W., & Anselmetti, D. (In Press). Categorization of 2-photon microscopy images of human articular cartilage into states of arthritis. Presented at the Tagung der Biomedizinischen Technik (BMT), Freiburg, Germany.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2373808
Herold, J., Loyek, C., & Nattkemper, T. W. (2011). Multivariate Image Mining. Wiley Interdisciplinary Reviews: DATA MINING AND KNOWLEDGE DISCOVERY, 1(1), 2-13. doi:10.1002/widm.4
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300102
Arif, M., Rajpoot, N., Technow, U., Chakraborty, T., Fisch, N., Jensen, N. A., Niehaus, K., et al. (2011). Quantification of Cell Infection Caused by Listeria monocytogenes Invasion. Journal of Biotechnology, 154(1), 76-83. doi:10.1016/j.jbiotec.2011.03.008
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300114
Loyek, C., Bunkowski, A., Vautz, W., & Nattkemper, T. W. (2011). Web2.0 paves new ways for collaborative and exploratory analysis of Chemical Compounds in Spectrometry Data. Journal of Integrative Bioinformatics, 8(2). doi:10.2390/biecoll-jib-2011-158
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2323705 OA
Langenkämper, D., Kölling, J., Abouna, S., Khan, M., Niehaus, K., & Nattkemper, T. W. (2011). TICAL - a web-tool for multivariate image clustering and data topology preserving visualization. Presented at the Microscopic Image Analysis with Applications in Biology (MIAAB), Heidelberg, Germany.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093532
Scherbart, A., & Nattkemper, T. W. (2011). Looking inside self-organizing map ensembles with resampling and negative correlation learning. Neural Networks, 24(1), 130-141. doi:10.1016/j.neunet.2010.08.004
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2300235
Schoening, T., Hans, V., & Nattkemper, T. W. (2011). Towards improved epilepsia diagnosis by unsupervised segmentation of neuropathology tissue sections using Ripley’s-L features. Bildverarbeitung für die Medizin 2011:Algorithmen - Systeme - Anwendungen Proceedings des Workshops vom 20. - 22. März 2011 in Lübeck, Informatik aktuell, 44-48. Berlin, Heidelberg: Springer. doi:10.1007/978-3-642-19335-4_11
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929340
Burgemeister, S., Nattkemper, T. W., Noll, T., Hoffrogge, R., & Flaschel, E. (2010). CellViCAM-Cell viability classification for animal cell cultures using dark field micrographs. JOURNAL OF BIOTECHNOLOGY, 149(4), 310-316. doi:10.1016/j.jbiotec.2010.07.020
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1794419
Herold, J., Zhou, L., Abouna, S., Pelengaris, S., Epstein, D., Khan, M., & Nattkemper, T. W. (2010). Integrating semantic annotation and information visualization for the analysis of multichannel fluorescence micrographs from pancreatic tissue. Computerized Medical Imaging and Graphics, 34(6), 446-452. doi:10.1016/j.compmedimag.2009.10.004
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929311
Gölzhäuser, A., Nattkemper, T. W., Niehaus, K., Pühler, A., & Sauer, M. (2010). BioImaging: Contributions from biology, physics and informatics. Journal of Biotechnology, 149(4), 227-228. doi:10.1016/j.jbiotec.2010.08.015
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929335
Herold, J., Schubert, W., & Nattkemper, T. W. (2010). Automated detection and quantification of fluorescently labeled synapses in murine brain tissue sections for high throughput applications. JOURNAL OF BIOTECHNOLOGY, 149(4), 299-309. doi:10.1016/j.jbiotec.2010.03.004
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018390
Herold, J., Abouna, S., Zhou, L., Pelengaris, S., Epstein, D. B. A., Khan, M., & Nattkemper, T. W. (2009). A way towards analyzing high-content bioimage data by means of semantic annotation and visual data mining. SPIE Medical Imaging. doi:10.1117/12.811710
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018422
Ontrup, J., Ehnert, N., Bergmann, M., & Nattkemper, T. W. (2009). BIIGLE - Web 2.0 enabled labelling and exploring of images from the Arctic deep-sea observatory HAUSGARTEN. OCEANS 2009 - Europe Bremen. doi:10.1109/oceanse.2009.5278332
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018427
Qureshi, H., Rajpoot, N., Nattkemper, T. W., & Hans, V. (2009). A Robust Adaptive Wavelet-based Method for Classification of Meningioma Histology Images. MICCAI«2009 Workshop on Optical Tissue Image Analysis in Microscopy, Histology, and Endoscopy
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635314 OA
Diaz, N. N., Krause, L., Goesmann, A., Niehaus, K., & Nattkemper, T. W. (2009). TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach. BMC Bioinformatics, 10(1), 56. doi:10.1186/1471-2105-10-56
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531
Albaum, S., Neuweger, H., Fraenzel, B., Lange, S., Mertens, D., Troetschel, C., Wolters, D., et al. (2009). Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments. Bioinformatics, 25(23), 3128-3134. doi:10.1093/bioinformatics/btp568
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588783
Purser, A., Bergmann, M., Ontrup, J., & Nattkemper, T. W. (2009). Use of machine-learning algorithms for the automated detection of cold-water coral habitats: a pilot study. Marine Ecology Progress Series, 397, 241-251. doi:10.3354/meps08154
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1591448
Saalbach, A., Lange, O., Nattkemper, T. W., & Meyer-Baese, A. (2009). On the application of (topographic) independent and tree-dependent component analysis for the examination of DCE-MRI data. BIOMEDICAL SIGNAL PROCESSING AND CONTROL, 4(3), 247-253. doi:10.1016/j.bspc.2009.03.010
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018440
Schoening, T., Ehnert, N., Ontrup, J., & Nattkemper, T. W. (2009). BIIGLE Tools - A Web 2.0 Approach for Visual Bioimage Database Mining. IV 09 - Intl. Conference on Information Visualization. doi:10.1109/iv.2009.71
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018405
Loyek, C., Woermann, F. G., & Nattkemper, T. W. (2008). Detection of Focal Cortical Dysplasia in MRI Using Textural Features. Proceedings of BVM 2008, 432-436. Berlin, Heidelberg: Springer Verlag. doi:10.1007/978-3-540-78640-5_87
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636280 OA
Timm, W., Scherbart, A., Boecker, S., Kohlbacher, O., & Nattkemper, T. W. (2008). Peak intensity prediction in MALDI-TOF mass spectrometry: A machine learning study to support quantitative proteomics. BMC Bioinformatics, 9(1), 443. doi:10.1186/1471-2105-9-443
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585611 OA
Wei, N., Flaschel, E., Friehs, K., & Nattkemper, T. W. (2008). A machine vision system for automated non-invasive assessment of cell viability via dark field microscopy, wavelet feature selection and classification. BMC Bioinformatics, 9(1), 449. doi:10.1186/1471-2105-9-449
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587052
Martin, C., Diaz, N. N., Ontrup, J., & Nattkemper, T. W. (2008). Hyperbolic SOM-based clustering of DNA fragment features for taxonomic visualization and classification. Bioinformatics, 24(14), 1568-1574. doi:10.1093/bioinformatics/btn257
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588286
Twellmann, T., Meyer-Baese, A., Lange, O., Foo, S., & Nattkemper, T. W. (2008). Model-free visualization of suspicious lesions in breast MRI based on supervised and unsupervised learning. ENGINEERING APPLICATIONS OF ARTIFICIAL INTELLIGENCE, 21(2), 129-140. doi:10.1016/j.engappai.2007.04.005
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783364 OA
Krause, L., Diaz, N. N., Goesmann, A., Kelley, S., Nattkemper, T. W., Rohwer, F., Edwards, R. A., et al. (2008). Phylogenetic classification of short environmental DNA fragments. Nucleic Acids Research, 36(7), 2230-2239. doi:10.1093/nar/gkn038
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018409
Martin, C., & Nattkemper, T. W. (2008). A Tree Index to Support Clustering Based Exploratory Data Analysis. Bioinformatics Research and Development : Second International Conference, BIRD 2008 Vienna, Austria, July 7-9, 2008 Proceedings, 13, 1-15. doi:10.1007/978-3-540-70600-7_1
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018435
Scherbart, A., Timm, W., Böcker, S., & Nattkemper, T. W. (2008). Improved Mass Spectrometry Peak Intensity Prediction by Adaptive Feature Weighting. International Conference on Neural Information Processing. doi:10.1007/978-3-642-02490-0_63
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018381
Albaum, S., Neuweger, H., Lange, S., Mertens, D., Runte, K., Kalinowski, J., Nattkemper, T. W., et al. (2008). ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract). HUPO 7th Annual World Congress
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