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84 Publikationen

2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932066
MAIA - A machine learning assisted image annotation method for environmental monitoring and exploration
Zurowietz M, Langenkämper D, Hosking B, Ruhl H, Nattkemper TW (2018)
PLoS ONE 13(11): e0207498.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2018 | Bielefelder E-Dissertation | PUB-ID: 2930495 PUB | PDF | DOI
 
2018 | Bielefelder E-Dissertation | PUB-ID: 2931281
Computer Vision for Marine Environmental Monitoring
Osterloff J (2018)
Bielefeld: Universität Bielefeld.
PUB | PDF | DOI
 
2018 | Bielefelder E-Dissertation | PUB-ID: 2919935 PUB | PDF
 
2018 | Konferenzbeitrag | Angenommen | PUB-ID: 2921039
Strategies for Tackling the Class Imbalance Problem in Marine Image Classification
Langenkämper D, van Kevelaer R, Nattkemper TW (Accepted)
Presented at the International Conference on Pattern Recognition 2018, Computer Vision for Automated Analysis of Underwater Imagery Workshop, Beijing.
PUB | PDF
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909190
BIIGLE 2.0 - Browsing and Annotating Large Marine Image Collections
Langenkämper D, Zurowietz M, Schoening T, Nattkemper TW (2017)
Frontiers in Marine Science 4(March): 83.
PUB | Dateien verfügbar | DOI | WoS
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901413
Spatio-Temporal Metabolite Profiling of the Barley Germination Process by MALDI MS Imaging
Gorzolka K, Kölling J, Nattkemper TW, Niehaus K (2016)
PLOS ONE 11(3): 0150208.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907705
Omics Fusion - A Platform for Integrative Analysis of Omics Data
Brink B, Seidel A, Kleinbölting N, Nattkemper TW, Albaum S (2016)
Journal of Integrative Bioinformatics 13(4: SI): 296.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Konferenzband | Veröffentlicht | PUB-ID: 2901695
German Conference on Bioinformatics 2014
Giegerich R, Hofestädt R, Nattkemper TW (Eds) (2014)
GI-Edition: lecture notes in informatics 235.
PUB
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2494458
Semi-automated image analysis for the assessment of megafaunal densities at the Arctic deep-sea observatory HAUSGARTEN
Schoening T, Bergmann M, Purser A, Dannheim J, Gutt J, Nattkemper TW (2012)
PLoS ONE 7(6): e38179.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2455753
RAMTaB: Robust Alignment of Multi-Tag Bioimages
Raza S-E-A, Epstein D, Nattkemper TW, Rajpoot N (2012)
PLoS ONE 7(2): e30894.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2012 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2515687
Analyzing Multi-Tag Bioimages with BIOIMAX colocation mining tools
Kölling J, Rathke M, Abouna S, Khan M, Nattkemper TW (2012)
Presented at the IEEE International Symposium on BIOMEDICAL IMAGING (ISBI), Barcelona.
PUB | PDF
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498232
Protein turnover quantification in a multi-labeling approach - from data calculation to evaluation
Trötschel C, Albaum S, Wolff D, Schröder S, Goesmann A, Nattkemper TW, Poetsch A (2012)
Molecular & Cellular Proteomics 11(8): 512-526.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2481783
WHIDE - A web tool for visual data mining colocation patterns in multivariate bioimages
Kölling J, Langenkämper D, Sylvie A, Michale K, Nattkemper TW (2012)
Bioinformatics 28(8): 1143-1150.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2012 | Konferenzbeitrag | Im Druck | PUB-ID: 2515596
Are we ready for Science 2.0?
Nattkemper TW (In Press)
Presented at the 4th International Conference on Knowledge Management and Information Sharing (KMIS), Barcelona.
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2012 | Konferenzbeitrag | PUB-ID: 2515700
Investigation of hidden parameters influencing the automated object detection in benthic images
Schoening T, Bergmann M, Boetius A, Nattkemper TW (2012)
Presented at the IEEE OCEANS 2012 MTS/IEEE, Hampton Roads, Virginia, USA.
PUB
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300063
A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application study
Albaum S, Hahne H, Otto A, Haußmann U, Becher D, Poetsch A, Goesmann A, Nattkemper TW (2011)
Proteome Science 9(1): 30.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300082
BIOIMAX - A Web 2.0 approach for easy exploratory and collaborative access to multivariate bioimage data
Loyek C, Khan M, Rajpoot N, Nattkemper TW (2011)
BMC Bioinformatics 12(1): 297.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300073
A Normalized Tree Index for identification of correlated clinical parameters in microarray data
Martin C, Tauchen A, Becker A, Nattkemper TW (2011)
BioData Mining 4(1): 2.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300092
Megafaunal assemblages from two shelf stations west of Svalbard
Bergmann M, Langwald N, Ontrup J, Soltwedel T, Schewe I, Klages M, Nattkemper TW (2011)
Marine Biology Research 7(6): 525-539.
PUB | DOI | WoS
 
2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2300232
A Web2.0 Strategy for the Collaborative Analysis of Complex Bioimages
Loyek C, Kölling J, Langenkämper D, Niehaus K, Nattkemper TW (2011)
In: Advances in Intelligent Data Analysis X: 10th International Symposium, IDA 2011, Porto, Portugal, October 29-31, 2011. Proceedings. Gama J, Bradley E, Hollmén J (Eds); Lecture Notes in Computer Science, 7014. Berlin, Heidelberg: Springer: 258-269.
PUB | PDF | DOI
 
2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2300237
Towards Protein Network Analysis using TIS Imaging and Exploratory Data Analysis
Langenkämper D, Kölling J, Khan M, Rajpoot N, Nattkemper TW (2011)
Presented at the Workshop on Computational Systems Biology (WCSB), Zürich, Switzerland.
PUB | PDF
 
2011 | Konferenzbeitrag | Im Druck | PUB-ID: 2315356
Categorization of 2-photon microscopy images of human articular cartilage into states of arthritis
Bergmann T, Fiebich TM, Nattkemper TW, Anselmetti D (In Press)
Presented at the Tagung der Biomedizinischen Technik (BMT), Freiburg, Germany.
PUB
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2373808
Multivariate Image Mining
Herold J, Loyek C, Nattkemper TW (2011)
Wiley Interdisciplinary Reviews: DATA MINING AND KNOWLEDGE DISCOVERY 1(1): 2-13.
PUB | DOI | WoS
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300102
Quantification of Cell Infection Caused by Listeria monocytogenes Invasion
Arif M, Rajpoot N, Technow U, Chakraborty T, Fisch N, Jensen NA, Niehaus K, Nattkemper TW (2011)
Journal of Biotechnology 154(1): 76-83.
PUB | DOI | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300114
Web2.0 paves new ways for collaborative and exploratory analysis of Chemical Compounds in Spectrometry Data
Loyek C, Bunkowski A, Vautz W, Nattkemper TW (2011)
Journal of Integrative Bioinformatics 8(2).
PUB | DOI | PubMed | Europe PMC
 
2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2323705
TICAL - a web-tool for multivariate image clustering and data topology preserving visualization
Langenkämper D, Kölling J, Abouna S, Khan M, Niehaus K, Nattkemper TW (2011)
Presented at the Microscopic Image Analysis with Applications in Biology (MIAAB), Heidelberg, Germany.
PUB | PDF | Download (ext.)
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093532
Looking inside self-organizing map ensembles with resampling and negative correlation learning
Scherbart A, Nattkemper TW (2011)
Neural Networks 24(1): 130-141.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2300235
Towards improved epilepsia diagnosis by unsupervised segmentation of neuropathology tissue sections using Ripley’s-L features
Schoening T, Hans V, Nattkemper TW (2011)
In: Bildverarbeitung für die Medizin 2011:Algorithmen - Systeme - Anwendungen Proceedings des Workshops vom 20. - 22. März 2011 in Lübeck. Informatik aktuell. Berlin, Heidelberg: Springer: 44-48.
PUB | DOI
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929340
CellViCAM-Cell viability classification for animal cell cultures using dark field micrographs
Burgemeister S, Nattkemper TW, Noll T, Hoffrogge R, Flaschel E (2010)
JOURNAL OF BIOTECHNOLOGY 149(4): 310-316.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1794419
Integrating semantic annotation and information visualization for the analysis of multichannel fluorescence micrographs from pancreatic tissue
Herold J, Zhou L, Abouna S, Pelengaris S, Epstein D, Khan M, Nattkemper TW (2010)
Computerized Medical Imaging and Graphics 34(6): 446-452.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929311
BioImaging: Contributions from biology, physics and informatics
Gölzhäuser A, Nattkemper TW, Niehaus K, Pühler A, Sauer M (2010)
Journal of Biotechnology 149(4): 227-228.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929335 PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018390
A way towards analyzing high-content bioimage data by means of semantic annotation and visual data mining
Herold J, Abouna S, Zhou L, Pelengaris S, Epstein DBA, Khan M, Nattkemper TW (2009)
In: SPIE Medical Imaging.
PUB | DOI
 
2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018422
BIIGLE - Web 2.0 enabled labelling and exploring of images from the Arctic deep-sea observatory HAUSGARTEN
Ontrup J, Ehnert N, Bergmann M, Nattkemper TW (2009)
In: OCEANS 2009 - Europe. Bremen.
PUB | DOI
 
2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018427
A Robust Adaptive Wavelet-based Method for Classification of Meningioma Histology Images
Qureshi H, Rajpoot N, Nattkemper TW, Hans V (2009)
In: MICCAI«2009 Workshop on Optical Tissue Image Analysis in Microscopy, Histology, and Endoscopy.
PUB
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635314
TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach
Diaz NN, Krause L, Goesmann A, Niehaus K, Nattkemper TW (2009)
BMC Bioinformatics 10(1): 56.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531
Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments
Albaum S, Neuweger H, Fraenzel B, Lange S, Mertens D, Troetschel C, Wolters D, Kalinowski J, Nattkemper TW, Goesmann A (2009)
Bioinformatics 25(23): 3128-3134.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588783
Use of machine-learning algorithms for the automated detection of cold-water coral habitats: a pilot study
Purser A, Bergmann M, Ontrup J, Nattkemper TW (2009)
Marine Ecology Progress Series 397: 241-251.
PUB | DOI | WoS
 
2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1591448
On the application of (topographic) independent and tree-dependent component analysis for the examination of DCE-MRI data
Saalbach A, Lange O, Nattkemper TW, Meyer-Baese A (2009)
BIOMEDICAL SIGNAL PROCESSING AND CONTROL 4(3): 247-253.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018440
BIIGLE Tools - A Web 2.0 Approach for Visual Bioimage Database Mining
Schoening T, Ehnert N, Ontrup J, Nattkemper TW (2009)
In: IV 09 - Intl. Conference on Information Visualization.
PUB | DOI
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018405
Detection of Focal Cortical Dysplasia in MRI Using Textural Features
Loyek C, Woermann FG, Nattkemper TW (2008)
In: Proceedings of BVM 2008. Berlin, Heidelberg: Springer Verlag: 432-436.
PUB | DOI
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636280
Peak intensity prediction in MALDI-TOF mass spectrometry: A machine learning study to support quantitative proteomics
Timm W, Scherbart A, Boecker S, Kohlbacher O, Nattkemper TW (2008)
BMC Bioinformatics 9(1): 443.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585611 PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587052
Hyperbolic SOM-based clustering of DNA fragment features for taxonomic visualization and classification
Martin C, Diaz NN, Ontrup J, Nattkemper TW (2008)
Bioinformatics 24(14): 1568-1574.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588286
Model-free visualization of suspicious lesions in breast MRI based on supervised and unsupervised learning
Twellmann T, Meyer-Baese A, Lange O, Foo S, Nattkemper TW (2008)
ENGINEERING APPLICATIONS OF ARTIFICIAL INTELLIGENCE 21(2): 129-140.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783364
Phylogenetic classification of short environmental DNA fragments
Krause L, Diaz NN, Goesmann A, Kelley S, Nattkemper TW, Rohwer F, Edwards RA, Stoye J (2008)
Nucleic Acids Research 36(7): 2230-2239.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018409
A Tree Index to Support Clustering Based Exploratory Data Analysis
Martin C, Nattkemper TW (2008)
In: Bioinformatics Research and Development : Second International Conference, BIRD 2008 Vienna, Austria, July 7-9, 2008 Proceedings. Communications in Computer and Information Science, 13. Berlin, Heidelberg: Springer: 1-15.
PUB | DOI
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018435
Improved Mass Spectrometry Peak Intensity Prediction by Adaptive Feature Weighting
Scherbart A, Timm W, Böcker S, Nattkemper TW (2008)
In: International Conference on Neural Information Processing. Auckland, New Zealand.
PUB | DOI
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018381
ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract)
Albaum S, Neuweger H, Lange S, Mertens D, Runte K, Kalinowski J, Nattkemper TW, Goesmann A (2008)
In: HUPO 7th Annual World Congress.
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