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84 Publikationen

2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2455753 OA
Raza S-E-A, Epstein D, Nattkemper TW, Rajpoot N. RAMTaB: Robust Alignment of Multi-Tag Bioimages. PLoS ONE. 2012;7(2):e30894.
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2012 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2515687 OA
Kölling J, Rathke M, Abouna S, Khan M, Nattkemper TW. Analyzing Multi-Tag Bioimages with BIOIMAX colocation mining tools. Presented at the IEEE International Symposium on BIOMEDICAL IMAGING (ISBI), Barcelona.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498232
Trötschel C, Albaum S, Wolff D, et al. Protein turnover quantification in a multi-labeling approach - from data calculation to evaluation. Molecular & Cellular Proteomics. 2012;11(8):512-526.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2481783 OA
Kölling J, Langenkämper D, Sylvie A, Michale K, Nattkemper TW. WHIDE - A web tool for visual data mining colocation patterns in multivariate bioimages. Bioinformatics. 2012;28(8):1143-1150.
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2012 | Konferenzbeitrag | Im Druck | PUB-ID: 2515596 OA
Nattkemper TW. Are we ready for Science 2.0? Presented at the 4th International Conference on Knowledge Management and Information Sharing (KMIS), Barcelona.
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2012 | Konferenzbeitrag | PUB-ID: 2515700
Schoening T, Bergmann M, Boetius A, Nattkemper TW. Investigation of hidden parameters influencing the automated object detection in benthic images. Presented at the IEEE OCEANS 2012 MTS/IEEE, Hampton Roads, Virginia, USA.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300063 OA
Albaum S, Hahne H, Otto A, et al. A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application study. Proteome Science. 2011;9(1):30.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300073 OA
Martin C, Tauchen A, Becker A, Nattkemper TW. A Normalized Tree Index for identification of correlated clinical parameters in microarray data. BioData Mining. 2011;4(1):2.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300082 OA
Loyek C, Khan M, Rajpoot N, Nattkemper TW. BIOIMAX - A Web 2.0 approach for easy exploratory and collaborative access to multivariate bioimage data. BMC Bioinformatics. 2011;12(1):297.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300092
Bergmann M, Langwald N, Ontrup J, et al. Megafaunal assemblages from two shelf stations west of Svalbard. Marine Biology Research. 2011;7(6):525-539.
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2300232 OA
Loyek C, Kölling J, Langenkämper D, Niehaus K, Nattkemper TW. A Web2.0 Strategy for the Collaborative Analysis of Complex Bioimages. In: Gama J, Bradley E, Hollmén J, eds. Advances in Intelligent Data Analysis X: 10th International Symposium, IDA 2011, Porto, Portugal, October 29-31, 2011. Proceedings. Lecture Notes in Computer Science. Vol 7014. Berlin, Heidelberg: Springer; 2011: 258-269.
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2300237 OA
Langenkämper D, Kölling J, Khan M, Rajpoot N, Nattkemper TW. Towards Protein Network Analysis using TIS Imaging and Exploratory Data Analysis. Presented at the Workshop on Computational Systems Biology (WCSB), Zürich, Switzerland.
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2011 | Konferenzbeitrag | Im Druck | PUB-ID: 2315356
Bergmann T, Fiebich TM, Nattkemper TW, Anselmetti D. Categorization of 2-photon microscopy images of human articular cartilage into states of arthritis. Presented at the Tagung der Biomedizinischen Technik (BMT), Freiburg, Germany.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2373808
Herold J, Loyek C, Nattkemper TW. Multivariate Image Mining. Wiley Interdisciplinary Reviews: DATA MINING AND KNOWLEDGE DISCOVERY. 2011;1(1):2-13.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300102
Arif M, Rajpoot N, Technow U, et al. Quantification of Cell Infection Caused by Listeria monocytogenes Invasion. Journal of Biotechnology. 2011;154(1):76-83.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300114
Loyek C, Bunkowski A, Vautz W, Nattkemper TW. Web2.0 paves new ways for collaborative and exploratory analysis of Chemical Compounds in Spectrometry Data. Journal of Integrative Bioinformatics. 2011;8(2).
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2323705 OA
Langenkämper D, Kölling J, Abouna S, Khan M, Niehaus K, Nattkemper TW. TICAL - a web-tool for multivariate image clustering and data topology preserving visualization. Presented at the Microscopic Image Analysis with Applications in Biology (MIAAB), Heidelberg, Germany.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093532
Scherbart A, Nattkemper TW. Looking inside self-organizing map ensembles with resampling and negative correlation learning. Neural Networks. 2011;24(1):130-141.
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2300235
Schoening T, Hans V, Nattkemper TW. Towards improved epilepsia diagnosis by unsupervised segmentation of neuropathology tissue sections using Ripley’s-L features. In: Bildverarbeitung für die Medizin 2011:Algorithmen - Systeme - Anwendungen Proceedings des Workshops vom 20. - 22. März 2011 in Lübeck. Informatik aktuell. Berlin, Heidelberg: Springer; 2011: 44-48.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929340
Burgemeister S, Nattkemper TW, Noll T, Hoffrogge R, Flaschel E. CellViCAM-Cell viability classification for animal cell cultures using dark field micrographs. JOURNAL OF BIOTECHNOLOGY. 2010;149(4):310-316.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1794419
Herold J, Zhou L, Abouna S, et al. Integrating semantic annotation and information visualization for the analysis of multichannel fluorescence micrographs from pancreatic tissue. Computerized Medical Imaging and Graphics. 2010;34(6):446-452.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929311
Gölzhäuser A, Nattkemper TW, Niehaus K, Pühler A, Sauer M. BioImaging: Contributions from biology, physics and informatics. Journal of Biotechnology. 2010;149(4):227-228.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929335
Herold J, Schubert W, Nattkemper TW. Automated detection and quantification of fluorescently labeled synapses in murine brain tissue sections for high throughput applications. JOURNAL OF BIOTECHNOLOGY. 2010;149(4):299-309.
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018390
Herold J, Abouna S, Zhou L, et al. A way towards analyzing high-content bioimage data by means of semantic annotation and visual data mining. In: SPIE Medical Imaging. 2009.
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018422
Ontrup J, Ehnert N, Bergmann M, Nattkemper TW. BIIGLE - Web 2.0 enabled labelling and exploring of images from the Arctic deep-sea observatory HAUSGARTEN. In: OCEANS 2009 - Europe. Bremen; 2009.
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018427
Qureshi H, Rajpoot N, Nattkemper TW, Hans V. A Robust Adaptive Wavelet-based Method for Classification of Meningioma Histology Images. In: MICCAI«2009 Workshop on Optical Tissue Image Analysis in Microscopy, Histology, and Endoscopy. 2009.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635314 OA
Diaz NN, Krause L, Goesmann A, Niehaus K, Nattkemper TW. TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach. BMC Bioinformatics. 2009;10(1):56.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531
Albaum S, Neuweger H, Fraenzel B, et al. Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments. Bioinformatics. 2009;25(23):3128-3134.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588783
Purser A, Bergmann M, Ontrup J, Nattkemper TW. Use of machine-learning algorithms for the automated detection of cold-water coral habitats: a pilot study. Marine Ecology Progress Series. 2009;397:241-251.
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1591448
Saalbach A, Lange O, Nattkemper TW, Meyer-Baese A. On the application of (topographic) independent and tree-dependent component analysis for the examination of DCE-MRI data. BIOMEDICAL SIGNAL PROCESSING AND CONTROL. 2009;4(3):247-253.
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018440
Schoening T, Ehnert N, Ontrup J, Nattkemper TW. BIIGLE Tools - A Web 2.0 Approach for Visual Bioimage Database Mining. In: IV 09 - Intl. Conference on Information Visualization. 2009.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018405
Loyek C, Woermann FG, Nattkemper TW. Detection of Focal Cortical Dysplasia in MRI Using Textural Features. In: Proceedings of BVM 2008. Berlin, Heidelberg: Springer Verlag; 2008: 432-436.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636280 OA
Timm W, Scherbart A, Boecker S, Kohlbacher O, Nattkemper TW. Peak intensity prediction in MALDI-TOF mass spectrometry: A machine learning study to support quantitative proteomics. BMC Bioinformatics. 2008;9(1):443.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585611 OA
Wei N, Flaschel E, Friehs K, Nattkemper TW. A machine vision system for automated non-invasive assessment of cell viability via dark field microscopy, wavelet feature selection and classification. BMC Bioinformatics. 2008;9(1):449.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587052
Martin C, Diaz NN, Ontrup J, Nattkemper TW. Hyperbolic SOM-based clustering of DNA fragment features for taxonomic visualization and classification. Bioinformatics. 2008;24(14):1568-1574.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588286
Twellmann T, Meyer-Baese A, Lange O, Foo S, Nattkemper TW. Model-free visualization of suspicious lesions in breast MRI based on supervised and unsupervised learning. ENGINEERING APPLICATIONS OF ARTIFICIAL INTELLIGENCE. 2008;21(2):129-140.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783364 OA
Krause L, Diaz NN, Goesmann A, et al. Phylogenetic classification of short environmental DNA fragments. Nucleic Acids Research. 2008;36(7):2230-2239.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018409
Martin C, Nattkemper TW. A Tree Index to Support Clustering Based Exploratory Data Analysis. In: Bioinformatics Research and Development : Second International Conference, BIRD 2008 Vienna, Austria, July 7-9, 2008 Proceedings. Communications in Computer and Information Science. Vol 13. Berlin, Heidelberg: Springer; 2008: 1-15.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018435
Scherbart A, Timm W, Böcker S, Nattkemper TW. Improved Mass Spectrometry Peak Intensity Prediction by Adaptive Feature Weighting. In: International Conference on Neural Information Processing. Auckland, New Zealand; 2008.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018381
Albaum S, Neuweger H, Lange S, et al. ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract). In: HUPO 7th Annual World Congress. 2008.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018398
Herold J, Friedenberger M, Bode M, Rajpoot N, Schubert W, Nattkemper TW. Flexible Synapse Detection in Fluorescence Micrographs by Modeling Human Expert Grading. In: Proc. of 2008 IEEE International Symposium on Biomedical Imaging. 2008.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018432
Scherbart A, Nattkemper TW. The Diversity of Regression Ensembles Combining Bagging and Random Subspace Method. In: International Conference on Neural Information Processing. 2008.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1630738
Pobigaylo N, Szymczak S, Nattkemper TW, Becker A. Identification of genes relevant to symbiosis and competitiveness in Sinorhizobium meliloti using signature-tagged mutants. MOLECULAR PLANT-MICROBE INTERACTIONS. 2008;21(2):219-231.
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2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018412
Martin C, Díaz Solórzano NN, Ontrup J, Nattkemper TW. Genome feature exploration using hyperbolic Self-Organizing Maps. In: Proceedings of the 6th International Workshop on Self-Organizing Maps (WSOM 2007). Bielefeld: Bielefeld University; 2007.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593120
Wei N, You J, Friehs K, Flaschel E, Nattkemper TW. An in situ probe for on-line monitoring of cell density and viability on the basis of dark field microscopy in conjunction with image processing and supervised machine learning. Biotechnology and Bioengineering. 2007;97(6):1489-1500.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1595739
Wei N, You J, Friehs K, Flaschel E, Nattkemper TW. In situ dark field microscopy for on-line monitoring of yeast cultures. BIOTECHNOLOGY LETTERS. 2007;29(3):373-378.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1630749
Lessmann B, Nattkemper TW, Hans VH, Degenhard A. A method for linking computed image features to histological semantics in neuropathology. Journal of Biomedical Informatics. 2007;40(6):631-641.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783345 OA
Krause L, McHardy AC, Nattkemper TW, Pühler A, Stoye J, Meyer F. GISMO - gene identification using a support vector machine for ORF classification. Nucleic Acids Research. 2007;35(2):540-549.
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2007 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2018416
Nattkemper TW, Degenhard A, Twellmann T. Breas. In: Hayat MA, ed. Cancer Imaging - Lung and breast carcinomas. Vol 1. Academic Press; 2007: 309-324.
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2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2374232
Varini C, Lessmann B, Degenhard A, Hans VH, Nattkemper TW. Visual Exploration of Pathology Images by a Discrete Wavelet Transform Preprocessed Locally Linear Embedding. In: Handels H, Ehrhardt J, Horsch A, Meinzer H-P, Tolxdorff T, eds. Bildverarbeitung für die Medizin. Springer; 2006: 66-70.
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2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2374254
Lessmann B, Nattkemper TW, Huth J, et al. Content Based Image Retrieval for Dynamic Time Series Data. In: Proceedings of BVM. 2006: 61-65.
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2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2374494
Timm W, Böcker S, Twellmann T, Nattkemper TW. Peak intensity prediction for pmf mass spectra using support vector regression. In: Proc. of the 7th International FLINS Conference on Applied Artificial Intelligence. 2006: 565-572.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1600329
Miksch G, Bettenworth F, Friehs K, Flaschel E, Saalbach A, Nattkemper TW. A rapid reporter system using GFP as a reporter protein for identification and screening of synthetic stationary-phase promoters in Escherichia coli. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY. 2006;70(2):229-236.
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2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1597259
Martin C, Deters H grosse, Nattkemper TW. Fusing biomedical multi-modal data for exploratory data analysis. In: ARTIFICIAL NEURAL NETWORKS - ICANN 2006, PT 2. Vol 4132. SPRINGER-VERLAG BERLIN; 2006: 798-807.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598838
Pobigaylo N, Wetter D, Szymczak S, et al. Construction of a large signature-tagged mini-Tn5 transposon library and its application to mutagenesis of Sinorhizobium meliloti. APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 2006;72(6):4329-4337.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596731
Varini C, Degenhard A, Nattkemper TW. Visual exploratory analysis of DCE-MRI data in breast cancer by dimensional data reduction: A comparative study. BIOMEDICAL SIGNAL PROCESSING AND CONTROL. 2006;1(1):56-63.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598535
Varini C, Degenhard A, Nattkemper TW. ISOLLE: LLE with geodesic distance. NEUROCOMPUTING. 2006;69(13-15):1768-1771.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603560
Nattkemper TW, Arnrich B, Lichte O, et al. Evaluation of radiological features for breast tumour classification in clinical screening with machine learning methods. ARTIFICIAL INTELLIGENCE IN MEDICINE. 2005;34(2):129-139.
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2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2374546
Saalbach A, Twellmann T, Nattkemper TW, Wismüller A, Ontrup J, Ritter H. A hyperbolic topographic mapping for proximity data. In: Proc. of the IASTED International Conference of Artificial Intelligence and Applications. Vol 2005. 2005: 106-111.
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2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2374666
Twellmann T, Lichte O, Saalbach A, Wismüller A, Nattkemper TW. An Adaptive Colour Scale for Comparison of Pseudo Colouring Techniques for DCE-MRI Data. Presented at the Workshop für Bildverarbeiteung für die Medzin.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2374187
Saalbach A, Ontrup J, Ritter H, Nattkemper TW. Image fusion based on topographic mappings using the hyperbolic space. Information Visualization. 2005;4(4):266-275.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603030
Nattkemper TW, Wismuller A. Tumor feature visualization with unsupervised learning. MEDICAL IMAGE ANALYSIS. 2005;9(4):344-351.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1946602
Wei N, Flaschel E, Saalbach A, Twellmann T, Nattkemper TW. Reagent-free automatic cell viability determination using neural networks based machine vision and dark-field microscopy in Saccharomyces cerevisiae. Conf Proc IEEE Eng Med Biol Soc. 2005;6.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602344
Prank K, Schulze E, Eckert O, et al. Machine learning approaches for phenotype-genotype mapping: predicting heterozygous mutations in the CYP21B gene from steroid profiles. EUROPEAN JOURNAL OF ENDOCRINOLOGY. 2005;153(2):301-305.
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2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1601519
Varini C, Degenhard A, Nattkemper TW. ISOLLE: Locally linear embedding with geodesic distance. In: KNOWLEDGE DISCOVERY IN DATABASES: PKDD 2005. Vol 3721. SPRINGER-VERLAG BERLIN; 2005: 331-342.
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2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1601848
Miksch G, Bettenworth F, Friehs K, et al. Libraries of synthetic stationary-phase and stress promoters as a tool for fine-tuning of expression of recombinant proteins in Escherichia coli. JOURNAL OF BIOTECHNOLOGY. 2005;120(1):25-37.
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2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1601906
Lessmann B, Degenhard A, Kessar P, et al. SOM-based wavelet filtering for the exploration of medical images. In: ARTIFICIAL NEURAL NETWORKS: BIOLOGICAL INSPIRATIONS - ICANN 2005, PT 1, PROCEEDINGS. Vol 3696. SPRINGER-VERLAG BERLIN; 2005: 671-676.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602177
Twellmann T, Lichte O, Nattkemper TW. An adaptive tissue characterization network for model-free visualization of dynamic contrast-enhanced magnetic resonance image data. IEEE TRANSACTIONS ON MEDICAL IMAGING. 2005;24(10):1256-1266.
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2004 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2375262
Varini C, Nattkemper TW, Degenhard A, Wismüller A. Visualisation of Breast Tumour DCE-MRI Data using LLE. In: Proc. Medical Image Understanding and Analysis (MIUA). BMVA; 2004: 97-100.
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606041
Nattkemper TW. Multivariate image analysis in biomedicine. JOURNAL OF BIOMEDICAL INFORMATICS. 2004;37(5):380-391.
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1666510 OA
Twellmann T, Saalbach A, Gerstung O, Leach MO, Nattkemper TW. Image fusion for dynamic contrast enhanced magnetic resonance imaging. Biomed Eng Online. 2004;3(1):35.
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2004 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2017550 OA
Nattkemper TW, Schubert W, Hermann T, Ritter H. A Hybrid System for Cell Detection in Digital Micrographs. In: Tilg B, ed. Biomedical Engineering, Proc. Vol 417. Innsbruck, Austria: ACTA Press; 2004.
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2003 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2017545 OA
Nattkemper TW, Hermann T, Schubert W, Ritter H. Look & Listen: Sonification and Visualization of Multiparameter Micrographs. In: Engineering in Medicine and Biology Society. Proceedings of the 25th Annual International Conference of the IEEE. Vol 2. Cancun, Mexico: IEEE; 2003: 1311-1314.
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1612741
Nattkemper TW, Twellmann T, Ritter H, Schubert W. Human vs. machine: evaluation of fluorescence micrographs. Computers in Biology and Medicine. 2003;33(1):31-43.
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