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40 Publikationen

2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2913690 OA
Zhu, Lu, and Ester, Martin. 2017. “Bayesian Collective Markov Random Fields for Subcellular Localization Prediction of Human Proteins”. In Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology,and Health Informatics - ACM-BCB '17. ACM Press.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2765914
Zhu, Lu, Malatras, Apostolos, Thorley, Matthew, Aghoghogbe, Idonnya, Mer, Arvind, Duguez, Stéphanie, Butler-Browne, Gillian, Voit, Thomas, and Duddy, William. 2015. “CellWhere: graphical display of interaction networks organized on subcellular localizations”. Nucleic Acids Research 43 (W1): W571-W575.
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2013 | Bielefelder E-Dissertation | PUB-ID: 2594322 OA
Janowski, Sebastian Jan. 2013. VANESA - A bioinformatics software application for the modeling, visualization, analysis, and simulation of biological networks in systems biology applications. Bielefeld: Bielefeld University.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560811
Lee, Hang-Mao, Dietz, Karl-Josef, and Hofestädt, Ralf. 2013. “Computational construction of specialized biological networks”. Journal of Bioinformatics and Computational Biology 11 (01): 1340003.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560817
Sommer, Björn, Kormeier, Benjamin, Demenkov, Pavel S., Arrigo, Patrizio, Hippe, Klaus, Ates, Özgür, Kochetov, Alexey V., Ivanisenko, Vladimir A., Kolchanov, Nikolay A., and Hofestädt, Ralf. 2013. “Subcellular localization charts: a new visual methodology for the semi-automatic localization of protein-related data sets”. Journal of Bioinformatics and Computational Biology 11 (01): 1340005.
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2374720
Hippe, Klaus, Kormeier, Benjamin, Janowski, Sebastian Jan, Töpel, Thoralf, and Hofestädt, Ralf. 2011. “DAWIS-M.D. 2.0 - A Data Warehouse Information System for Metabolic Data”. In Proceedings of the 7th International Symposium on Integrative Bioinformatics.
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2011 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2376427
Hofestädt, Ralf. 2011. “Petri Nets and the Simulation of Metabolic Networks”. In Biological Petri Nets, ed. Edgar Wingender, 1. Edition, 162:1-2. Studies in health technology and informatics. Amsterdam: IOS Press.
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2011 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2376491
Hofestädt, Ralf, and Thelen, Sabine. 2011. “Quantitative Modeling of Biochemical Networks”. In Biological Petri Nets, ed. Edgar Wingender, 1. Edition, 162:3-16. Studies in health technology and informatics. Amsterdam: IOS Press.
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2011 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2376523
Chen, Ming, and Hofestädt, Ralf. 2011. “Quantitative Petri Net Model of Gene Regulated Metabolic Networks in the Cell”. In Biological Petri Nets, ed. Edgar Wingender, 1. Edition, 162:38-55. Studies in health technology and informatics. Amsterdam: IOS Press.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2290112
Chen, Ming, Hu, Minjie, and Hofestädt, Ralf. 2011. “A Systematic Petri Net Approach for Multiple-Scale Modeling and Simulation of Biochemical Processes”. Applied Biochemistry and Biotechnology 164 (3): 338-352.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326407
Chen, Ming, Hariharaputran, Sridhar, Hofestädt, Ralf, Kormeier, Benjamin, and Spangardt, Sarah. 2011. “Petri net models for the semi-automatic construction of large scale biological networks”. Natural Computing 10 (3): 1077-1097.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2408590
Huang, Donglin, Huang, Yiling, Bai, Youhuang, Chen, Dijun, Hofestädt, Ralf, Klukas, Cristian, and Chen, Ming. 2011. “MyBioNet: interactively visualize, edit and merge biological networks on the Web”. Bioinformatics 27 (23): 3321-3322.
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2458209
Hofestädt, Ralf. 2011. “Fundamental Features of Metabolic Computing”. In Advances in Soft Computing: 10th Mexican International Conference on Artificial Intelligence, MICAI 2011, Puebla, Mexico, November 26 - December 4, 2011, Proceedings, Part II, ed. Ildar Batyrshin and Grigori Sidorov, 7095:143-152. Lecture Notes in Computer Science. Berlin, Heidelberg: Springer.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2408602
Kormeier, Benjamin, Hippe, Klaus, and Hofestädt, Ralf. 2011. “Data Warehouses in Bioinformatics: Integration of Molecular Biological Data”. it Information Technology 53 (5): 241-249.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2408607
Lee, Hang-Mao, Dietz, Karl-Josef, and Hofestädt, Ralf. 2010. “Prediction of thioredoxin and glutaredoxin target proteins by identifying reversibly oxidized cysteinyl residues.”. Journal of Integrative Bioinformatics (Special Issue) 7 (3): 23-34.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2406168
Kormeier, Benjamin, Hippe, Klaus, Töpel, Thoralf, and Hofestädt, Ralf. 2010. “CardioVINEdb: a data warehouse approach for integration of life science data in cardiovascular diseases”. Journal of Integrative Bioinformatics 7 (1): 142.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1945096
Kormeier, Benjamin, Hippe, Klaus, Arrigo, Patrizio, Töpel, Thoralf, Janowski, Sebastian Jan, and Hofestädt, Ralf. 2010. “Reconstruction of biological networks based on life science data integration”. Journal of Integrative Bioinformatics 7 (2): 3-8.
PUB | DOI | PubMed | Europe PMC
 
2010 | Konferenzband | Veröffentlicht | PUB-ID: 2376605
Hofestädt, Ralf, and Kolchanov, Nikolay, eds. 2010. “Computational Systems Biology: German/Russian Network of Computational Systems Biology”, Medizinische Informatik und Bioinformatik, .
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2409400
Töpel, Thoralf, Scheible, Dagmar, Trefz, Friedrich, and Hofestädt, Ralf. 2010. “RAMEDIS: a comprehensive information system for variations and corresponding phenotypes of rare metabolic diseases”. Human Mutation 31 (1): E1081-E1088.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2374757
Sommer, Björn, Tiys, E. S, Kormeier, Benjamin, Hippe, Klaus, Janowski, Sebastian Jan, Ivanisenko, T. V, Bragin, A. O, et al. 2010. “Visualization and Analysis of a Cardio Vascular Disease-and MUPP1-related Biological Network combining Text Mining and Data Warehouse Approaches”. Journal of Integrative Bioinformatics 7 (1): 148.
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