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40 Publikationen

2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2913690 OA
Zhu L, Ester M (2017)
Bayesian Collective Markov Random Fields for Subcellular Localization Prediction of Human Proteins.
In: Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology,and Health Informatics - ACM-BCB '17. ACM Press.
PUB | PDF | DOI
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2765914
Zhu L, Malatras A, Thorley M, Aghoghogbe I, Mer A, Duguez S, Butler-Browne G, Voit T, Duddy W (2015)
CellWhere: graphical display of interaction networks organized on subcellular localizations.
Nucleic Acids Research 43(W1): W571-W575.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Bielefelder E-Dissertation | PUB-ID: 2594322 OA
Janowski SJ (2013)
VANESA - A bioinformatics software application for the modeling, visualization, analysis, and simulation of biological networks in systems biology applications.
Bielefeld: Bielefeld University.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560811
Lee H-M, Dietz K-J, Hofestädt R (2013)
Computational construction of specialized biological networks.
Journal of Bioinformatics and Computational Biology 11(01): 1340003.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560817
Sommer B, Kormeier B, Demenkov PS, Arrigo P, Hippe K, Ates Ö, Kochetov AV, Ivanisenko VA, Kolchanov NA, Hofestädt R (2013)
Subcellular localization charts: a new visual methodology for the semi-automatic localization of protein-related data sets.
Journal of Bioinformatics and Computational Biology 11(01): 1340005.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2374720
Hippe K, Kormeier B, Janowski SJ, Töpel T, Hofestädt R (2011)
DAWIS-M.D. 2.0 - A Data Warehouse Information System for Metabolic Data.
In: Proceedings of the 7th International Symposium on Integrative Bioinformatics. .
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2011 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2376427
Hofestädt R (2011)
Petri Nets and the Simulation of Metabolic Networks.
In: Biological Petri Nets. Wingender E (Ed); Studies in health technology and informatics, 162. 1. Edition. Amsterdam: IOS Press: 1-2.
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2011 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2376491
Hofestädt R, Thelen S (2011)
Quantitative Modeling of Biochemical Networks.
In: Biological Petri Nets. Wingender E (Ed); Studies in health technology and informatics, 162. 1. Edition. Amsterdam: IOS Press: 3-16.
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2011 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2376523
Chen M, Hofestädt R (2011)
Quantitative Petri Net Model of Gene Regulated Metabolic Networks in the Cell.
In: Biological Petri Nets. Wingender E (Ed); Studies in health technology and informatics, 162. 1. Edition. Amsterdam: IOS Press: 38-55.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2290112
Chen M, Hu M, Hofestädt R (2011)
A Systematic Petri Net Approach for Multiple-Scale Modeling and Simulation of Biochemical Processes.
Applied Biochemistry and Biotechnology 164(3): 338-352.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326407
Chen M, Hariharaputran S, Hofestädt R, Kormeier B, Spangardt S (2011)
Petri net models for the semi-automatic construction of large scale biological networks.
Natural Computing 10(3): 1077-1097.
PUB | DOI | WoS
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2408590
Huang D, Huang Y, Bai Y, Chen D, Hofestädt R, Klukas C, Chen M (2011)
MyBioNet: interactively visualize, edit and merge biological networks on the Web.
Bioinformatics 27(23): 3321-3322.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2458209
Hofestädt R (2011)
Fundamental Features of Metabolic Computing.
In: Advances in Soft Computing: 10th Mexican International Conference on Artificial Intelligence, MICAI 2011, Puebla, Mexico, November 26 - December 4, 2011, Proceedings, Part II. Batyrshin I, Sidorov G (Eds); Lecture Notes in Computer Science, 7095. Berlin, Heidelberg: Springer: 143-152.
PUB | DOI
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2408602
Kormeier B, Hippe K, Hofestädt R (2011)
Data Warehouses in Bioinformatics: Integration of Molecular Biological Data.
it Information Technology 53(5): 241-249.
PUB | DOI
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2408607
Lee H-M, Dietz K-J, Hofestädt R (2010)
Prediction of thioredoxin and glutaredoxin target proteins by identifying reversibly oxidized cysteinyl residues.
Journal of Integrative Bioinformatics (Special Issue) 7(3): 23-34.
PUB | DOI | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2406168
Kormeier B, Hippe K, Töpel T, Hofestädt R (2010)
CardioVINEdb: a data warehouse approach for integration of life science data in cardiovascular diseases.
Journal of Integrative Bioinformatics 7(1): 142.
PUB | DOI | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1945096
Kormeier B, Hippe K, Arrigo P, Töpel T, Janowski SJ, Hofestädt R (2010)
Reconstruction of biological networks based on life science data integration.
Journal of Integrative Bioinformatics 7(2): 3-8.
PUB | DOI | PubMed | Europe PMC
 
2010 | Konferenzband | Veröffentlicht | PUB-ID: 2376605
Hofestädt R, Kolchanov N (Eds) (2010)
Computational Systems Biology: German/Russian Network of Computational Systems Biology.
Medizinische Informatik und Bioinformatik.
PUB
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2409400
Töpel T, Scheible D, Trefz F, Hofestädt R (2010)
RAMEDIS: a comprehensive information system for variations and corresponding phenotypes of rare metabolic diseases.
Human Mutation 31(1): E1081-E1088.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2374757
Sommer B, Tiys ES, Kormeier B, Hippe K, Janowski SJ, Ivanisenko TV, Bragin AO, Arrigo P, Demenkov PS, Kochetov AV, Ivanisenko VA, Kolchanov NA, Hofestädt R (2010)
Visualization and Analysis of a Cardio Vascular Disease-and MUPP1-related Biological Network combining Text Mining and Data Warehouse Approaches.
Journal of Integrative Bioinformatics 7(1): 148.
PUB | DOI | PubMed | Europe PMC
 

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