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50 Publikationen

2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933767
Fritz, Adrian, Hofmann, Peter, Majda, Stephan, Dahms, Eik, Dröge, Johannes, Fiedler, Jessika, Lesker, Till R., et al. 2019. “CAMISIM: simulating metagenomes and microbial communities”. Microbiome 7: 17.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916929
Stolze, Yvonne, Bremges, Andreas, Maus, Irena, Pühler, Alfred, Sczyrba, Alexander, and Schlüter, Andreas. 2018. “Targeted in situ metatranscriptomics for selected taxa from mesophilic and thermophilic biogas plants”. Microbial Biotechnology 11 (4): 667-679.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920777
Celis, Juan Sebastián, Wibberg, Daniel, Ramírez-Portilla, Catalina, Rupp, Oliver, Sczyrba, Alexander, Winkler, Anika, Kalinowski, Jörn, and Wilke, Thomas. 2018. “Binning Enables Efficient Host Genome Reconstruction in Cnidarian Holobionts”. GigaScience 7 (7): giy075.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920723
Meyer, Fernando, Hofmann, Peter, Belmann, Peter, Garrido-Oter, Ruben, Fritz, Adrian, Sczyrba, Alexander, and McHardy, Alice C. 2018. “AMBER: Assessment of Metagenome BinnERs”. GigaScience: giy069.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930593
Linden, Mikael, Prochazka, Michal, Lappalainen, Ilkka, Bucik, Dominik, Vyskocil, Pavel, Kuba, Martin, Silén, Sami, et al. 2018. “Common ELIXIR Service for Researcher Authentication and Authorisation”. F1000Research 7: 1199.
PUB | DOI | Download (ext.) | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2915890
Huang, Liren, Krüger, Jan, and Sczyrba, Alexander. 2018. “Analyzing large scale genomic data on the cloud with Sparkhit”. Bioinformatics 34 (9): 1457-1465.
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2018 | Bielefelder Masterarbeit | PUB-ID: 2919932
Wiens, Maximilian. 2018. Concept, design and initial implementation of the de.NBI Cloud Portal. Bielefeld: Universität Bielefeld.
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2018 | Bielefelder E-Dissertation | PUB-ID: 2918990
Rumming, Madis. 2018. Metadata-driven computational (meta)genomics. A practical machine learning approach. Bielefeld: Universität Bielefeld.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920750
Maus, Irena, Rumming, Madis, Bergmann, Ingo, Heeg, Kathrin, Pohl, Marcel, Nettmann, Edith, Jaenicke, Sebastian, et al. 2018. “Characterization of Bathyarchaeota genomes assembled from metagenomes of biofilms residing in mesophilic and thermophilic biogas reactors”. Biotechnology for Biofuels 11: 167.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918275
Fleming, E. J., Woyke, T., Donatello, A. R., Kuypers, M. M. M., Sczyrba, Alexander, Littmann, S., and Emerson, D. 2018. “Insights into the fundamental physiology of the uncultured Fe-oxidizing bacterium Leptothrix ochracea”. Applied and Environmental Microbiology 84 (9): e02239-17.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909153
Yu, Jia, Blom, Jochen, Sczyrba, Alexander, and Goesmann, Alexander. 2017. “Rapid protein alignment in the cloud: HAMOND combines fast DIAMOND alignments with Hadoop parallelism”. Journal of Biotechnology 257: 58-60.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913556
Jünemann, Sebastian, Kleinbölting, Nils, Jaenicke, Sebastian, Henke, Christian, Hassa, Julia, Nelkner, Johanna, Stolze, Yvonne, et al. 2017. “Bioinformatics for NGS-based metagenomics and the application to biogas research”. Journal of Biotechnology 261 (SI): 10-23.
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2017 | Datenpublikation | PUB-ID: 2914921
Huang, Liren, Krüger, Jan, and Sczyrba, Alexander. 2017. “Sparkhit evaluation data set”. Bielefeld University. doi:10.4119/unibi/2914921.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914367
Sczyrba, Alexander, Hofmann, Peter, Belmann, Peter, Koslicki, David, Janssen, Stefan, Dröge, Johannes, Gregor, Ivan, et al. 2017. “Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software”. Nature Methods 14 (11): 1063-1071.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904815
Stolze, Yvonne, Bremges, Andreas, Rumming, Madis, Henke, Christian, Maus, Irena, Pühler, Alfred, Sczyrba, Alexander, and Schlüter, Andreas. 2016. “Identification and genome reconstruction of abundant distinct taxa in microbiomes from one thermophilic and three mesophilic production-scale biogas plants”. Biotechnology for Biofuels 9: 156.
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2016 | Bielefelder E-Dissertation | PUB-ID: 2906743
Bremges, Andreas. 2016. Assembling the microbial dark matter. Bielefeld: Universität Bielefeld.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907633
Lux, Markus, Krüger, Jan, Rinke, Christian, Maus, Irena, Schlüter, Andreas, Woyke, Tanja, Sczyrba, Alexander, and Hammer, Barbara. 2016. “acdc – Automated Contamination Detection and Confidence estimation for single-cell genome data”. BMC Bioinformatics 17: 543.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904836
Heyer, R., Benndorf, D., Kohrs, F., De Vrieze, J., Boon, N., Hoffmann, M., Rapp, E., Schlüter, Andreas, Sczyrba, Alexander, and Reichl, U. 2016. “Proteotyping of biogas plant microbiomes separates biogas plants according to process temperature and reactor type”. Biotechnology for Biofuels 9 (1): 155.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903489
Maus, Irena, Cibis, Katharina Gabriela, Bremges, Andreas, Stolze, Yvonne, Wibberg, Daniel, Tomazetto, Geizecler, Blom, Jochen, et al. 2016. “Genomic characterization of Defluviitoga tunisiensis L3, a key hydrolytic bacterium in a thermophilic biogas plant and its abundance as determined by metagenome fragment recruitment”. Journal of Biotechnology 232: 50-60.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903302
Wibberg, Daniel, Bremges, Andreas, Dammann-Kalinowski, Tanja, Maus, Irena, Igeño, Maria Isabel, Vogelsang, Ralph, König, Christoph, et al. 2016. “Finished genome sequence and methylome of the cyanide-degrading Pseudomonas pseudoalcaligenes strain CECT5344 as resolved by single-molecule real-time sequencing”. Journal of Biotechnology 232: 61-68.
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