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50 Publikationen

2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933767
A. Fritz, P. Hofmann, S. Majda, E. Dahms, J. Dröge, J. Fiedler, T. R. Lesker, P. Belmann, M. Z. DeMaere, A. E. Darling, et al., “CAMISIM: simulating metagenomes and microbial communities”, Microbiome, 2019, 7, : 17.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916929
Y. Stolze, A. Bremges, I. Maus, A. Pühler, A. Sczyrba, and A. Schlüter, “Targeted in situ metatranscriptomics for selected taxa from mesophilic and thermophilic biogas plants”, Microbial Biotechnology, 2018, 11, 667-679.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920777
J. S. Celis, D. Wibberg, C. Ramírez-Portilla, O. Rupp, A. Sczyrba, A. Winkler, J. Kalinowski, and T. Wilke, “Binning Enables Efficient Host Genome Reconstruction in Cnidarian Holobionts”, GigaScience, 2018, 7, : giy075.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920723
F. Meyer, P. Hofmann, P. Belmann, R. Garrido-Oter, A. Fritz, A. Sczyrba, and A. C. McHardy, “AMBER: Assessment of Metagenome BinnERs”, GigaScience, 2018, : giy069.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930593
M. Linden, M. Prochazka, I. Lappalainen, D. Bucik, P. Vyskocil, M. Kuba, S. Silén, P. Belmann, A. Sczyrba, S. Newhouse, et al., “Common ELIXIR Service for Researcher Authentication and Authorisation”, F1000Research, 2018, 7, : 1199.
PUB | DOI | Download (ext.) | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2915890
L. Huang, J. Krüger, and A. Sczyrba, “Analyzing large scale genomic data on the cloud with Sparkhit”, Bioinformatics, 2018, 34, 1457-1465.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Bielefelder Masterarbeit | PUB-ID: 2919932
M. Wiens, Concept, design and initial implementation of the de.NBI Cloud Portal, Universität Bielefeld, Bielefeld, 2018.
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2018 | Bielefelder E-Dissertation | PUB-ID: 2918990
M. Rumming, Metadata-driven computational (meta)genomics. A practical machine learning approach, Universität Bielefeld, Bielefeld, 2018.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920750
I. Maus, M. Rumming, I. Bergmann, K. Heeg, M. Pohl, E. Nettmann, S. Jaenicke, J. Blom, A. Pühler, A. Schlüter, et al., “Characterization of Bathyarchaeota genomes assembled from metagenomes of biofilms residing in mesophilic and thermophilic biogas reactors”, Biotechnology for Biofuels, 2018, 11, : 167.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918275
E. J. Fleming, T. Woyke, A. R. Donatello, M. M. M. Kuypers, A. Sczyrba, S. Littmann, and D. Emerson, “Insights into the fundamental physiology of the uncultured Fe-oxidizing bacterium Leptothrix ochracea”, Applied and Environmental Microbiology, 2018, 84, : e02239-17.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909153
J. Yu, J. Blom, A. Sczyrba, and A. Goesmann, “Rapid protein alignment in the cloud: HAMOND combines fast DIAMOND alignments with Hadoop parallelism”, Journal of Biotechnology, 2017, 257, 58-60.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913556
S. Jünemann, N. Kleinbölting, S. Jaenicke, C. Henke, J. Hassa, J. Nelkner, Y. Stolze, S. Albaum, A. Schlüter, A. Goesmann, et al., “Bioinformatics for NGS-based metagenomics and the application to biogas research”, Journal of Biotechnology, 2017, 261, 10-23.
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2017 | Datenpublikation | PUB-ID: 2914921
L. Huang, J. Krüger, and A. Sczyrba, (2017): Sparkhit evaluation data set. Bielefeld University. doi:10.4119/unibi/2914921.
PUB | Dateien verfügbar | DOI
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914367
A. Sczyrba, P. Hofmann, P. Belmann, D. Koslicki, S. Janssen, J. Dröge, I. Gregor, S. Majda, J. Fiedler, E. Dahms, et al., “Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software”, Nature Methods, 2017, 14, 1063-1071.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904815
Y. Stolze, A. Bremges, M. Rumming, C. Henke, I. Maus, A. Pühler, A. Sczyrba, and A. Schlüter, “Identification and genome reconstruction of abundant distinct taxa in microbiomes from one thermophilic and three mesophilic production-scale biogas plants”, Biotechnology for Biofuels, 2016, 9, : 156.
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2016 | Bielefelder E-Dissertation | PUB-ID: 2906743
A. Bremges, Assembling the microbial dark matter, Universität Bielefeld, Bielefeld, 2016.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907633
M. Lux, J. Krüger, C. Rinke, I. Maus, A. Schlüter, T. Woyke, A. Sczyrba, and B. Hammer, “acdc – Automated Contamination Detection and Confidence estimation for single-cell genome data”, BMC Bioinformatics, 2016, 17, : 543.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904836
R. Heyer, D. Benndorf, F. Kohrs, J. De Vrieze, N. Boon, M. Hoffmann, E. Rapp, A. Schlüter, A. Sczyrba, and U. Reichl, “Proteotyping of biogas plant microbiomes separates biogas plants according to process temperature and reactor type”, Biotechnology for Biofuels, 2016, 9, : 155.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903489
I. Maus, K. G. Cibis, A. Bremges, Y. Stolze, D. Wibberg, G. Tomazetto, J. Blom, A. Sczyrba, H. König, A. Pühler, et al., “Genomic characterization of Defluviitoga tunisiensis L3, a key hydrolytic bacterium in a thermophilic biogas plant and its abundance as determined by metagenome fragment recruitment”, Journal of Biotechnology, 2016, 232, 50-60.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903302
D. Wibberg, A. Bremges, T. Dammann-Kalinowski, I. Maus, M. I. Igeño, R. Vogelsang, C. König, V. M. Luque-Almagro, M. D. Roldán, A. Sczyrba, et al., “Finished genome sequence and methylome of the cyanide-degrading Pseudomonas pseudoalcaligenes strain CECT5344 as resolved by single-molecule real-time sequencing”, Journal of Biotechnology, 2016, 232, 61-68.
PUB | DOI | WoS | PubMed | Europe PMC
 

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