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53 Publikationen

2019 | Bielefelder E-Dissertation | PUB-ID: 2936599
Huang L. Cloud-based Bioinformatics Framework for Next-Generation Sequencing Data. Bielefeld: Universität Bielefeld; 2019.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2934798
Pankoke H, Maus I, Loh G, et al. F5Evaluation of commercially available DNA extraction kits for the analysis of the broiler chicken cecal microbiota. FEMS microbiology letters. 2019.
PUB | DOI | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935923
Nelkner J, Henke C, Lin TW, et al. Effect of Long-Term Farming Practices on Agricultural Soil Microbiome Members Represented by Metagenomically Assembled Genomes (MAGs) and Their Predicted Plant-Beneficial Genes. Genes. 2019;10(6): 424.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933767
Fritz A, Hofmann P, Majda S, et al. CAMISIM: simulating metagenomes and microbial communities. Microbiome. 2019;7: 17.
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2018 | Bielefelder E-Dissertation | PUB-ID: 2918990
Rumming M. Metadata-driven computational (meta)genomics. A practical machine learning approach. Bielefeld: Universität Bielefeld; 2018.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916929
Stolze Y, Bremges A, Maus I, Pühler A, Sczyrba A, Schlüter A. Targeted in situ metatranscriptomics for selected taxa from mesophilic and thermophilic biogas plants. Microbial Biotechnology. 2018;11(4):667-679.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920777
Celis JS, Wibberg D, Ramírez-Portilla C, et al. Binning Enables Efficient Host Genome Reconstruction in Cnidarian Holobionts. GigaScience. 2018;7(7): giy075.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920723
Meyer F, Hofmann P, Belmann P, et al. AMBER: Assessment of Metagenome BinnERs. GigaScience. 2018: giy069.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930593
Linden M, Prochazka M, Lappalainen I, et al. Common ELIXIR Service for Researcher Authentication and Authorisation. F1000Research. 2018;7: 1199.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2915890
Huang L, Krüger J, Sczyrba A. Analyzing large scale genomic data on the cloud with Sparkhit. Bioinformatics. 2018;34(9):1457-1465.
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2018 | Bielefelder Masterarbeit | PUB-ID: 2919932
Wiens M. Concept, design and initial implementation of the de.NBI Cloud Portal. Bielefeld: Universität Bielefeld; 2018.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920750
Maus I, Rumming M, Bergmann I, et al. Characterization of Bathyarchaeota genomes assembled from metagenomes of biofilms residing in mesophilic and thermophilic biogas reactors. Biotechnology for Biofuels. 2018;11: 167.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918275
Fleming EJ, Woyke T, Donatello AR, et al. Insights into the fundamental physiology of the uncultured Fe-oxidizing bacterium Leptothrix ochracea. Applied and Environmental Microbiology. 2018;84(9): e02239-17.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909153
Yu J, Blom J, Sczyrba A, Goesmann A. Rapid protein alignment in the cloud: HAMOND combines fast DIAMOND alignments with Hadoop parallelism. Journal of Biotechnology. 2017;257:58-60.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913556
Jünemann S, Kleinbölting N, Jaenicke S, et al. Bioinformatics for NGS-based metagenomics and the application to biogas research. Journal of Biotechnology. 2017;261(SI):10-23.
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2017 | Datenpublikation | PUB-ID: 2914921
Huang L, Krüger J, Sczyrba A. Sparkhit evaluation data set. Bielefeld University; 2017.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914367
Sczyrba A, Hofmann P, Belmann P, et al. Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software. Nature Methods. 2017;14(11):1063-1071.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904815
Stolze Y, Bremges A, Rumming M, et al. Identification and genome reconstruction of abundant distinct taxa in microbiomes from one thermophilic and three mesophilic production-scale biogas plants. Biotechnology for Biofuels. 2016;9: 156.
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2016 | Bielefelder E-Dissertation | PUB-ID: 2906743
Bremges A. Assembling the microbial dark matter. Bielefeld: Universität Bielefeld; 2016.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907633
Lux M, Krüger J, Rinke C, et al. acdc – Automated Contamination Detection and Confidence estimation for single-cell genome data. BMC Bioinformatics. 2016;17: 543.
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