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50 Publikationen

2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2902190
Stiefel, F., Fischer, S., Sczyrba, A., Otte, K. & Hesse, F. (2016). miRNA profiling of high, low and non-producing CHO cells during biphasic fed-batch cultivation reveals process relevant targets for host cell engineering. Journal of Biotechnology, 225, 31-43. Elsevier BV. doi:10.1016/j.jbiotec.2016.03.028.
PUB | DOI | WoS | PubMed | Europe PMC
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901418
Campos, S.B., Lisboa, B.B., Camargo, F.A.O., Bayer, C., Sczyrba, A., Dirksen, P., Albersmeier, A., Kalinowski, J., Beneduzi, A., Costa, P.B., Passaglia, L.M.P., Vargas, L.K. & Wendisch, V.F. (2016). Soil suppressiveness and its relations with the microbial community in a Brazilian subtropical agroecosystem under different management systems. Soil Biology and Biochemistry, 96, 191-197. Elsevier BV. doi:10.1016/j.soilbio.2016.02.010.
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901729
Bremges, A., Singer, E., Woyke, T. & Sczyrba, A. (2016). MeCorS: Metagenome-enabled error correction of single cell sequencing reads. Bioinformatics, 32(14), 2199-2201. Oxford University Press (OUP). doi:10.1093/bioinformatics/btw144.
PUB | DOI | WoS | PubMed | Europe PMC
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900928
Nesme, J., Achouak, W., Agathos, S., Bailey, M., Baldrian, P., Brunel, D., Frostegard, A., Heulin, T., Jansson, J.K., Jurkevitch, E., Kowalchuk, G.A., Kruus, K.L., Lagares, A., Lapin-Scott, H.M., Le Paslier, D., ic-Mulec, I., Murrell, C., Myrold, D.D., Nalin, R., Nannipieri, P., Neufeld, J.D., O'Gara, F., Parnell, J.J., Pühler, A., Pylro, V., Ramos, J.L., Roesch, L., Schleper, C., Schloter, M., Sczyrba, A., Sessitsch, A., Sjöling, S., Sørensen, J., Sørensen, S.J., Tebbe, C.C., Topp, E., Tsiamis, G., Van Elsas, J.D., Van Keulen, G., Wagner, M., Widmer, F., Zhang, T., Zhang, X., Zhao, L., Zhu, Y.-G., Vogel, T.M. & Simonet, P. (2016). Back to the future of soil metagenomics. Frontiers in Microbiology, 7: 73. doi:10.3389/fmicb.2016.00073.
PUB | DOI | WoS | PubMed | Europe PMC
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901675
Krahn, T., Wibberg, D., Maus, I., Winkler, A., Bontron, S., Sczyrba, A., Nordmann, P., Pühler, A., Poirel, L. & Schlüter, A. (2016). Intraspecies transfer of the chromosomally encoded Acinetobacter baumannii blaNDM-1 carbapenemase gene. Antimicrobial Agents and Chemotherapy, 60(5), 3032-3040. American Society for Microbiology. doi:10.1128/AAC.00124-16.
PUB | DOI | WoS | PubMed | Europe PMC
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905260
Maus, I., Koeck, D.E., Cibis, K.G., Hahnke, S., Kim, Y.S., Langer, T., Kreubel, J., Erhard, M., Bremges, A., Off, S., Stolze, Y., Jaenicke, S., Goesmann, A., Sczyrba, A., Scherer, P., König, H., Schwarz, W.H., Zverlov, V.V., Liebl, W., Pühler, A., Schlüter, A. & Klocke, M. (2016). Unraveling the microbiome of a thermophilic biogas plant by metagenome and metatranscriptome analysis complemented by characterization of bacterial and archaeal isolates. Biotechnology for Biofuels, 9(1): 171. Springer Nature. doi:10.1186/s13068-016-0581-3.
PUB | DOI | WoS | PubMed | Europe PMC
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904234
Ortseifen, V., Stolze, Y., Maus, I., Sczyrba, A., Bremges, A., Albaum, S., Jaenicke, S., Fracowiak, J., Pühler, A. & Schlüter, A. (2016). An integrated metagenome and -proteome analysis of the microbial community residing in a biogas production plant. Journal of Biotechnology, 231, 268-279. Elsevier BV. doi:10.1016/j.jbiotec.2016.06.014.
PUB | DOI | WoS | PubMed | Europe PMC
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764906
Bremges, A., Maus, I., Belmann, P., Eikmeyer, F.G., Winkler, A., Albersmeier, A., Pühler, A., Schlüter, A. & Sczyrba, A. (2015). Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant. GigaScience, 4(1): 33. Oxford University Press. doi:10.1186/s13742-015-0073-6.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2762833
Kohrs, F., Wolter, S., Benndorf, D., Heyer, R., Hoffmann, M., Rapp, E., Bremges, A., Sczyrba, A., Schlüter, A. & Reichl, U. (2015). Fractionation of biogas plant sludge material improves metaproteomic characterization to investigate metabolic activity of microbial communities. Proteomics, 15(20), 3585-3589. Wiley. doi:10.1002/pmic.201400557.
PUB | DOI | WoS | PubMed | Europe PMC
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2726183
Field, E.K., Sczyrba, A., Lyman, A.E., Harris, C.C., Woyke, T., Stepanauskas, R. & Emerson, D. (2015). Genomic insights into the uncultivated marine Zetaproteobacteria at Loihi Seamount. The ISME journal, 9, 857-870. doi:10.1038/ismej.2014.183.
PUB | DOI | WoS | PubMed | Europe PMC
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2782501
Belmann, P., Dröge, J., Bremges, A., McHardy, A.C., Sczyrba, A. & Barton, M.D. (2015). Bioboxes: standardised containers for interchangeable bioinformatics software. GigaScience, 4: 47. Biomed Central. doi:10.1186/s13742-015-0087-0.
PUB | DOI | WoS | PubMed | Europe PMC
2015 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2901612
Lux, M., Sczyrba, A. & Hammer, B. (2015). Automatic discovery of metagenomic structure. 2015 International Joint Conference on Neural Networks (IJCNN). Institute of Electrical & Electronics Engineers (IEEE). doi:10.1109/ijcnn.2015.7280500.
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2726156
Paul, B.G., Bagby, S.C., Czornyj, E., Arambula, D., Handa, S., Sczyrba, A., Ghosh, P., Miller, J.F. & Valentine, D.L. (2015). Targeted diversity generation by intraterrestrial archaea and archaeal viruses. Nature Communications, 6, 6585. doi:10.1038/ncomms7585.
PUB | DOI | WoS | PubMed | Europe PMC
2015 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2901462
Rumming, M., Krusche, P. & Tedder, P.M. (2015). Developing gold standard variant calls for whole-genome somatic variant calling using supervised learning. In EMBL Heidelberg (Hrsg.), . Gehalten auf der Cancer Genomics - EMBL Conference.
2015 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2901466
Osterholz, B., Wiebke, P., Fust, A., Rumming, M., Schlüter, A. & Sczyrba, A. (2015). A Bioinformatics Pipeline for the Detection of β-lactamase Genes in Metagenome Sequence Data and its Application to Production-Scale Biogas Plants. In Julius Kühn-Institut, Bundesforschungsinstitut für Kulturpflanzen Institut für Epidemiologie und Pathogendiagnostik (Hrsg.), . Gehalten auf der 3rd International Symposium on the environmental Dimension of Antibiotic Resistance.
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685992
Piao, H., Lachman, M., Malfatti, S., Sczyrba, A., Knierim, B., Auer, M., Tringe, S.G., Mackie, R.I., Yeoman, C.J. & Hess, M. (2014). Temporal dynamics of fibrolytic and methanogenic rumen microorganisms during in situ incubation of switchgrass determined by 16S rRNA gene profiling. Frontiers in Microbiology, 5(307). Frontiers Media SA. doi:10.3389/fmicb.2014.00307.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2654433
Kamke, J., Rinke, C., Schwientek, P., Mavromatis, K., Ivanova, N., Sczyrba, A., Woyke, T. & Hentschel, U. (2014). The Candidate Phylum Poribacteria by Single-Cell Genomics: New Insights into Phylogeny, Cell-Compartmentation, Eukaryote-Like Repeat Proteins, and Other Genomic Features. PLoS ONE, 9(1): e87353. Public Library of Science (PLoS). doi:10.1371/journal.pone.0087353.
PUB | DOI | WoS | PubMed | Europe PMC
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689051
Ghylin, T.W., Garcia, S.L., Moya, F., Oyserman, B.O., Schwientek, P., Forest, K.T., Mutschler, J., Dwulit-Smith, J., Chan, L.-K., Martinez-Garcia, M., Sczyrba, A., Stepanauskas, R., Grossart, H.-P., Woyke, T., Warnecke, F., Malmstrom, R., Bertilsson, S. & McMahon, K.D. (2014). Comparative single-cell genomics reveals potential ecological niches for the freshwater acI Actinobacteria lineage. The ISME Journal, 8(12), 2503-2516. Nature Publishing Group. doi:10.1038/ismej.2014.135.
PUB | DOI | WoS | PubMed | Europe PMC
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2672695
Swan, B.K., Chaffin, M.D., Martinez-Garcia, M., Morrison, H.G., Field, E.K., Poulton, N.J., Masland, E.D.P., Harris, C.C., Sczyrba, A., Chain, P.S.G., Koren, S., Woyke, T. & Stepanauskas, R. (2014). Genomic and metabolic diversity of marine group I thaumarchaeota in the mesopelagic of two subtropical gyres. PloS one, 9(4), 95380. Public Library of Science (PLoS). doi:10.1371/journal.pone.0095380.
PUB | DOI | WoS | PubMed | Europe PMC
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2665333
Henrich, B., Rumming, M., Sczyrba, A., Velleuer, E., Dietrich, R., Gerlach, W., Gombert, M., Rahn, S., Stoye, J., Borkhardt, A. & Fischer, U. (2014). Mycoplasma salivarium as a Dominant Coloniser of Fanconi Anaemia Associated Oral Carcinoma. PLoS ONE, 9(3), e92297. Public Library of Science (PLoS). doi:10.1371/journal.pone.0092297.
PUB | DOI | WoS | PubMed | Europe PMC

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