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50 Publikationen

2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2902190 PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901418
Soil suppressiveness and its relations with the microbial community in a Brazilian subtropical agroecosystem under different management systems
Campos SB, Lisboa BB, Camargo FAO, Bayer C, Sczyrba A, Dirksen P, Albersmeier A, Kalinowski J, Beneduzi A, Costa PB, Passaglia LMP, et al. (2016)
Soil Biology and Biochemistry 96: 191-197.
PUB | DOI | WoS
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901729
MeCorS: Metagenome-enabled error correction of single cell sequencing reads
Bremges A, Singer E, Woyke T, Sczyrba A (2016)
Bioinformatics 32(14): 2199-2201.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900928
Back to the future of soil metagenomics
Nesme J, Achouak W, Agathos S, Bailey M, Baldrian P, Brunel D, Frostegard A, Heulin T, Jansson JK, Jurkevitch E, Kowalchuk GA, et al. (2016)
Frontiers in Microbiology 7: 73.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901675
Intraspecies transfer of the chromosomally encoded Acinetobacter baumannii blaNDM-1 carbapenemase gene.
Krahn T, Wibberg D, Maus I, Winkler A, Bontron S, Sczyrba A, Nordmann P, Pühler A, Poirel L, Schlüter A (2016)
Antimicrobial Agents and Chemotherapy 60(5): 3032-3040.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905260
Unraveling the microbiome of a thermophilic biogas plant by metagenome and metatranscriptome analysis complemented by characterization of bacterial and archaeal isolates
Maus I, Koeck DE, Cibis KG, Hahnke S, Kim YS, Langer T, Kreubel J, Erhard M, Bremges A, Off S, Stolze Y, et al. (2016)
Biotechnology for Biofuels 9(1): 171.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904234
An integrated metagenome and -proteome analysis of the microbial community residing in a biogas production plant
Ortseifen V, Stolze Y, Maus I, Sczyrba A, Bremges A, Albaum S, Jaenicke S, Fracowiak J, Pühler A, Schlüter A (2016)
Journal of Biotechnology 231: 268-279.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764906
Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant
Bremges A, Maus I, Belmann P, Eikmeyer FG, Winkler A, Albersmeier A, Pühler A, Schlüter A, Sczyrba A (2015)
GigaScience 4(1): 33.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2762833
Fractionation of biogas plant sludge material improves metaproteomic characterization to investigate metabolic activity of microbial communities
Kohrs F, Wolter S, Benndorf D, Heyer R, Hoffmann M, Rapp E, Bremges A, Sczyrba A, Schlüter A, Reichl U (2015)
Proteomics 15(20): 3585-3589.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2726183
Genomic insights into the uncultivated marine Zetaproteobacteria at Loihi Seamount
Field EK, Sczyrba A, Lyman AE, Harris CC, Woyke T, Stepanauskas R, Emerson D (2015)
The ISME journal 9: 857-870.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2782501
Bioboxes: standardised containers for interchangeable bioinformatics software
Belmann P, Dröge J, Bremges A, McHardy AC, Sczyrba A, Barton MD (2015)
GigaScience 4: 47.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2901612
Automatic discovery of metagenomic structure
Lux M, Sczyrba A, Hammer B (2015)
In: 2015 International Joint Conference on Neural Networks (IJCNN). Institute of Electrical & Electronics Engineers (IEEE).
PUB | DOI
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2726156
Targeted diversity generation by intraterrestrial archaea and archaeal viruses
Paul BG, Bagby SC, Czornyj E, Arambula D, Handa S, Sczyrba A, Ghosh P, Miller JF, Valentine DL (2015)
Nature Communications 6: 6585.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2901462
Developing gold standard variant calls for whole-genome somatic variant calling using supervised learning
Rumming M, Krusche P, Tedder PM (2015)
Presented at the Cancer Genomics - EMBL Conference, EMBL Heidelberg.
PUB
 
2015 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2901466
A Bioinformatics Pipeline for the Detection of β-lactamase Genes in Metagenome Sequence Data and its Application to Production-Scale Biogas Plants
Osterholz B, Wiebke P, Fust A, Rumming M, Schlüter A, Sczyrba A (2015)
Presented at the 3rd International Symposium on the environmental Dimension of Antibiotic Resistance, Wernigerode.
PUB
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685992
Temporal dynamics of fibrolytic and methanogenic rumen microorganisms during in situ incubation of switchgrass determined by 16S rRNA gene profiling
Piao H, Lachman M, Malfatti S, Sczyrba A, Knierim B, Auer M, Tringe SG, Mackie RI, Yeoman CJ, Hess M (2014)
Frontiers in Microbiology 5(307).
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2654433
The Candidate Phylum Poribacteria by Single-Cell Genomics: New Insights into Phylogeny, Cell-Compartmentation, Eukaryote-Like Repeat Proteins, and Other Genomic Features
Kamke J, Rinke C, Schwientek P, Mavromatis K, Ivanova N, Sczyrba A, Woyke T, Hentschel U (2014)
PLoS ONE 9(1): e87353.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689051
Comparative single-cell genomics reveals potential ecological niches for the freshwater acI Actinobacteria lineage
Ghylin TW, Garcia SL, Moya F, Oyserman BO, Schwientek P, Forest KT, Mutschler J, Dwulit-Smith J, Chan L-K, Martinez-Garcia M, Sczyrba A, et al. (2014)
The ISME Journal 8(12): 2503-2516.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2672695
Genomic and metabolic diversity of marine group I thaumarchaeota in the mesopelagic of two subtropical gyres
Swan BK, Chaffin MD, Martinez-Garcia M, Morrison HG, Field EK, Poulton NJ, Masland EDP, Harris CC, Sczyrba A, Chain PSG, Koren S, et al. (2014)
PloS one 9(4): 95380.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2665333
Mycoplasma salivarium as a Dominant Coloniser of Fanconi Anaemia Associated Oral Carcinoma
Henrich B, Rumming M, Sczyrba A, Velleuer E, Dietrich R, Gerlach W, Gombert M, Rahn S, Stoye J, Borkhardt A, Fischer U (2014)
PLoS ONE 9(3): e92297.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2662055
Complete genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344
Wibberg D, Luque-Almagro VM, Igeño MI, Bremges A, Roldán MD, Merchán F, Sáez LP, Guijo MI, Manso MI, Macías D, Cabello P, et al. (2014)
Journal of biotechnology 175: 67-68.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2623500
Nonlinear dimensionality reduction for cluster identification in metagenomic samples
Gisbrecht A, Hammer B, Mokbel B, Sczyrba A (2013)
In: 17th International Conference on Information Visualisation IV 2013. Banissi E (Ed); 174-179.
PUB
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2613567
Insights into the phylogeny and coding potential of microbial dark matter
Rinke C, Schwientek P, Sczyrba A, Ivanova NN, Anderson IJ, Cheng J-F, Darling A, Malfatti S, Swan BK, Gies EA, Dodsworth JA, et al. (2013)
Nature 499(7459): 431-437.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2563424
UGA is an additional glycine codon in uncultured SR1 bacteria from the human microbiota
Campbell JH, O'Donoghue P, Campbell AG, Schwientek P, Sczyrba A, Woyke T, Söll D, Podar M (2013)
Proceedings of the National Academy of Sciences of the United States of America 110(14): 5540-5545.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2638234
Single-cell genomics reveal low recombination frequencies in freshwater bacteria of the SAR11 clade
Zaremba-Niedzwiedzka K, Viklund J, Zhao W, Ast J, Sczyrba A, Woyke T, McMahon K, Bertilsson S, Stepanauskas R, Andersson SG (2013)
Genome biology 14(11): R130.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2641352
Single-cell genomics reveals complex carbohydrate degradation patterns in poribacterial symbionts of marine sponges
Kamke J, Sczyrba A, Ivanova N, Schwientek P, Rinke C, Mavromatis K, Woyke T, Hentschel U (2013)
The ISME journal 7(12): 2287-2300.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2563543
Multiple Single-Cell Genomes Provide Insight into Functions of Uncultured Deltaproteobacteria in the Human Oral Cavity
Campbell AG, Campbell JH, Schwientek P, Woyke T, Sczyrba A, Allman S, Beall CJ, Griffen A, Leys E, Podar M (2013)
PLoS ONE 8(3): e59361.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2613623
Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean
Swan BK, Tupper B, Sczyrba A, Lauro FM, Martinez-Garcia M, González JM, Luo H, Wright JJ, Landry ZC, Hanson NW, Thompson BP, et al. (2013)
Proceedings of the National Academy of Sciences of the United States of America 110(28): 11463-11468.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1784020
GeneFisher-P: variations of GeneFisher as processes in Bio-jETI
Lamprecht A-L, Margaria T, Steffen B, Sczyrba A, Hartmeier S, Giegerich R (2008)
BMC Bioinformatics 9(Suppl 4): S13.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588303
Two interactive bioinformatics courses at the bielefeld university bioinformatics server
Sczyrba A, Konermann S, Giegerich R (2008)
BRIEFINGS IN BIOINFORMATICS 9(3): 243-249.
PUB | DOI | WoS | PubMed | Europe PMC
 

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