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154 Publikationen

2015 | Bielefelder E-Dissertation | PUB-ID: 2786037 OA
Hilker, R. (2015). Development of a read mapping analysis software and computational pan genome analysis of 20 Pseudomonas aeruginosa strains. Bielefeld: Bielefeld University.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2656773
Rupp, O., Becker, J., Brinkrolf, K., Timmermann, C., Borth, N., Pühler, A., Noll, T., and Goesmann, A. (2014). Construction of a Public CHO Cell Line Transcript Database Using Versatile Bioinformatics Analysis Pipelines. PLoS ONE 9, e85568.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2651944
Tielen, P., Wibberg, D., Blom, J., Rosin, N., Meyer, A. - K., Bunk, B., Schobert, M., Tüpker, R., Schatschneider, S., Rückert, C., et al. (2014). Genome Sequence of the Small-Colony Variant Pseudomonas aeruginosa MH27, Isolated from a Chronic Urethral Catheter Infection. Genome announcements 2.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2643946
Dohm, J. C., Minoche, A. E., Holtgräwe, D., Capella-Gutiérrez, S., Zakrzewski, F., Tafer, H., Rupp, O., Rosleff Sörensen, T., Stracke, R., Reinhardt, R., et al. (2014). The genome of the recently domesticated crop plant sugar beet (Beta vulgaris). Nature 505, 546-549.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2691732
Klippel, B., Sahm, K., Basner, A., Wiebusch, S., John, P., Lorenz, U., Peters, A., Abe, F., Takahashi, K., Kaiser, O., et al. (2014). Carbohydrate-active enzymes identified by metagenomic analysis of deep-sea sediment bacteria. Extremophiles 18, 853-863.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2555342
He, P., Hao, K., Blom, J., Rückert, C., Vater, J., Mao, Z., Wu, Y., Hou, M., He, P., He, Y., et al. (2013). Genome sequence of the plant growth promoting strain Bacillus amyloliquefaciens subsp. plantarum B9601-Y2 and expression of mersacidin and other secondary metabolites. Journal of biotechnology 164, 281-291.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2552500
Soares, S. C., Silva, A., Trost, E., Blom, J., Ramos, R., Carneiro, A., Ali, A., Santos, A. R., Pinto, A. C., Diniz, C., et al. (2013). The Pan-Genome of the Animal Pathogen Corynebacterium pseudotuberculosis Reveals Differences in Genome Plasticity between the Biovar ovis and equi Strains. PLoS ONE 8:e53818.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2549908
Wibberg, D., Jelonek, L., Rupp, O., Kröber, M., Eikmeyer, F. G., Goesmann, A., Hartmann, A., Borriss, R., Grosch, R., Pühler, A., et al. (2013). Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14. Journal of Biotechnology 167, 142-155.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2606943
Vences, M., Hauswaldt, S., Steinfartz, S., Rupp, O., Goesmann, A., Künzel, S., Orozco-Terwengel, P., Vieites, D. R., Nieto-Roman, S., Haas, S., et al. (2013). Radically different phylogeographies and patterns of genetic variation in two European brown frogs, genus Rana. Molecular phylogenetics and evolution 68, 657-670.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2602756
Smits, T. H. M., Rezzonico, F., López, M. M., Blom, J., Goesmann, A., Frey, J. E., and Duffy, B. (2013). Phylogenetic position and virulence apparatus of the pear flower necrosis pathogen Erwinia piriflorinigrans CFBP 5888(T) as assessed by comparative genomics. Systematic and applied microbiology 36, 449-456.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2641228
Jünemann, S., Sedlazeck, F. J., Prior, K., Albersmeier, A., John, U., Kalinowski, J., Mellmann, A., Goesmann, A., von Haeseler, A., Stoye, J., et al. (2013). Corrigendum: Updating benchtop sequencing performance comparison. Nature biotechnology 31, 1148.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2637220
Wu, H., Qiao, J., Blom, J., Rückert, C., Reva, O., Gao, X., and Borriss, R. (2013). The Rhizobacterium Bacillus amyloliquefaciens subsp. plantarum NAU-B3 Contains a Large Inversion within the Central Portion of the Genome. Genome announcements 1, e00941-13.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2633427
Wibberg, D., Blom, J., Rückert, C., Winkler, A., Albersmeier, A., Pühler, A., Schlüter, A., and Scharf, B. E. (2013). Draft Genome Sequence of Sinorhizobium meliloti RU11/001, a model organism for flagellum structure, motility and chemotaxis. Journal of Biotechnology 168, 731-733.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2632946
Köhler, K. A. K., Rückert, C., Schatschneider, S., Vorhölter, F. - J., Szczepanowski, R., Blank, L. M., Niehaus, K., Goesmann, A., Pühler, A., Kalinowski, J., et al. (2013). Complete genome sequence of Pseudomonas sp. strain VLB120 a solvent tolerant, styrene degrading bacterium, isolated from forest soil. Journal of Biotechnology 168, 729-730.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2622238
Barbe, S., Llop, P., Blom, J., Cabrefiga, J., Goesmann, A., Duffy, B., Montesinos, E., Smits, T. H. M., and Lopez, M. M. (2013). Complete sequence of Erwinia piriflorinigrans plasmids pEPIR37 and pEPIR5 and role of pEPIR37 in pathogen virulence. Plant Pathology 62, 786-798.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2615581
Brinkrolf, K., Rupp, O., Laux, H., Kollin, F., Ernst, W., Linke, B., Kofler, R., Romand, S., Hesse, F., Budach, W. E., et al. (2013). Chinese hamster genome sequenced from sorted chromosomes. Nature Biotechnology 31, 694-695.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2564601
Riedel, T., Gómez-Consarnau, L., Tomasch, J., Martin, M., Jarek, M., González, J. M., Spring, S., Rohlfs, M., Brinkhoff, T., Cypionka, H., et al. (2013). Genomics and Physiology of a Marine Flavobacterium Encoding a Proteorhodopsin and a Xanthorhodopsin-Like Protein. PLOS ONE 8, e57487.
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2013 | Bielefelder E-Dissertation | PUB-ID: 2604883 OA
Blom, J. (2013). Comparative genomics on gene and single nucleotide level. Bielefeld: Universitätsbibliothek.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2558460
Roetzer, A., Diel, R., Kohl, T. A., Rückert, C., Nübel, U., Blom, J., Wirth, T., Jaenicke, S., Schuback, S., Rüsch-Gerdes, S., et al. (2013). Whole Genome Sequencing versus Traditional Genotyping for Investigation of a Mycobacterium tuberculosis Outbreak: A Longitudinal Molecular Epidemiological Study. PLoS medicine 10, e1001387.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560837
Fritzenwanker, M., Kuenne, C., Billion, A., Hain, T., Zimmermann, K., Goesmann, A., Chakraborty, T., and Domann, E. (2013). Complete Genome Sequence of the Probiotic Enterococcus faecalis Symbioflor 1 Clone DSM 16431. Genome Announcements 1, e00165-12.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2576080
Toepel, J., Illmer-Kephalides, M., Jaenicke, S., Straube, J., May, P., Goesmann, A., and Kruse, O. (2013). New insights into Chlamydomonas reinhardtii hydrogen production processes by combined microarray/RNA-seq transcriptomics. Plant Biotechnology Journal 11, 717-733.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2631956
Rückert, C., Szczepanowski, R., Albersmeier, A., Goesmann, A., Iftime, D., Musiol, E. M., Blin, K., Wohlleben, W., Pühler, A., Kalinowski, J., et al. (2013). Complete genome sequence of the kirromycin producer Streptomyces collinus Tü 365 consisting of a linear chromosome and two linear plasmids. Journal of Biotechnology 168, 739-740.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2576539
Wichmann, F., Vorhölter, F. - J., Hersemann, L., Widmer, F., Blom, J., Niehaus, K., Reinhard, S., Conradin, C., and Kölliker, R. (2013). The noncanonical type III secretion system of Xanthomonas translucens pv. graminis is essential for forage grass infection. Molecular plant pathology 14, 576-588.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2635526
Koeck, D. E., Wibberg, D., Koellmeier, T., Blom, J., Jaenicke, S., Winkler, A., Albersmeier, A., Zverlov, V. V., Pühler, A., Schwarz, W. H., et al. (2013). Draft genome sequence of the cellulolytic Clostridium thermocellum wild-type strain BC1 playing a role in cellulosic biomass degradation. Journal of Biotechnology 168, 62-63.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2566922
Jünemann, S., Sedlazeck, F. J., Prior, K., Albersmeier, A., John, U., Kalinowski, J., Mellmann, A., Goesmann, A., von Haeseler, A., Stoye, J., et al. (2013). Updating benchtop sequencing performance comparison. Nature Biotechnology 31, 294-296.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2557938
Mann, R. A., Smits, T. H. M., Bühlmann, A., Blom, J., Goesmann, A., Frey, J. E., Plummer, K. M., Beer, S. V., Luck, J., Duffy, B., et al. (2013). Comparative Genomics of 12 Strains of Erwinia amylovora Identifies a Pan-Genome with a Large Conserved Core. PLOS ONE 8, e55644.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2561776
Trötschel, C., Albaum, S., and Poetsch, A. (2013). Proteome turnover in bacteria: current status for Corynebacterium glutamicum and related bacteria. Microbial biotechnology, 708-719.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2554079
Kuenne, C., Billion, A., Mraheil, M. A., Strittmatter, A., Daniel, R., Goesmann, A., Barbuddhe, S., Hain, T., and Chakraborty, T. (2013). Reassessment of the Listeria monocytogenes pan-genome reveals dynamic integration hotspots and mobile genetic elements as major components of the accessory genome. BMC Genomics 14, 47.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548286
Luque-Almagro, V. M., Acera, F., Igeño, M. I., Wibberg, D., Roldán, M. D., Sáez, L. P., Hennig, M., Quesada, A., Huertas, M. J., Blom, J., et al. (2013). Draft whole genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344. Environmental Microbiology 15, 253-270.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645668 OA
Bogen, C., Al-Dilaimi, A., Albersmeier, A., Wichmann, J., Grundmann, M., Rupp, O., Lauersen, K. J., Blifernez-Klassen, O., Kalinowski, J., Goesmann, A., et al. (2013). Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics 14, 926.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2635520
Dam, B., Dam, S., Blom, J., and Liesack, W. (2013). Genome Analysis Coupled with Physiological Studies Reveals a Diverse Nitrogen Metabolism in Methylocystis sp Strain SC2. Plos One 8, e74767.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2610129
Kessler, N., Bonte, A., Langenkämper, G., Niehaus, K., Goesmann, A., and Nattkemper, T. W. (2013). MeltDB 2.0 - Advances of the metabolomics software system. Bioinformatics 29, 2452-2459.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2607974
Niu, B., Vater, J., Rückert, C., Blom, J., Lehmann, M., Ru, J. - J., Chen, X. - H., Wang, Q., and Borriss, R. (2013). Polymyxin P is the active principle in suppressing phytopathogenic Erwinia spp. by the biocontrol rhizobacterium Paenibacillus polymyxa M-1. BMC microbiology 13, 137.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529309
Bolzan de Campos, S., Youn, J. - W., Farina, R., Jaenicke, S., Jünemann, S., Szczepanowski, R., Beneduzi, A., Vargas, L. K., Wendisch, V. F., and Passaglia, L. (2013). Changes in Root Bacterial Communities Associated to Two Different Development Stages of Canola (*Brassica napus* L. var oleifera) Evaluated through Next-Generation Sequencing. Microbial Ecology 65, 593-601.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529202
Zakrzewski, M., Bekel, T., Ander, C., Pühler, A., Rupp, O., Stoye, J., Schlüter, A., and Goesmann, A. (2013). MetaSAMS - A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets. Journal of Biotechnology 167, 156-165.
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2013 | Konferenzbeitrag | Im Druck | PUB-ID: 2538625
Bonte, A., Kessler, N., Nattkemper, T. W., Goesmann, A., Cecile, T., Mäder, P., Niehaus, K., and Langenkämper, G. (In Press).“Einsatz von Protein- und Metabolit-Profiling-Methoden zur Unterscheidung von ökologischem und konventionellem Weizen”. Presented at the 12. Wissenschaftstagung Ökologischer Landbau „Ideal und Wirklichkeit – Perspektiven Ökologischer Landbewirtschaftung“, Bonn, Germany.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498160 OA
Schröder, J., Maus, I., Meyer, K., Wördemann, S., Blom, J., Jaenicke, S., Schneider, J., Trost, E., and Tauch, A. (2012). Complete genome sequence, lifestyle, and multi-drug resistance of the human pathogen Corynebacterium resistens DSM 45100 isolated from blood samples of a leukemia patient. BMC Genomics 13:141.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2484618
Zakrzewski, M., Goesmann, A., Jaenicke, S., Jünemann, S., Eikmeyer, F. G., Szczepanowski, R., Al-Soud, W. A., Sørensen, S., Pühler, A., and Schlüter, A. (2012). Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing. Journal of Biotechnology 158, 248-258.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2513347
Trost, E., Blom, J., de Castro Soares, S., Huang, I. - H., Al-Dilaimi, A., Schröder, J., Jaenicke, S., Dorella, F. A., Rocha, F. S., Miyoshi, A., et al. (2012). Pangenomic Study of Corynebacterium diphtheriae That Provides Insights into the Genomic Diversity of Pathogenic Isolates from Cases of Classical Diphtheria, Endocarditis, and Pneumonia. Journal of bacteriology 194, 3199-3215.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500990
Rose, M. T., Rose, T. J., Pariasca-Tanaka, J., Yoshihashi, T., Neuweger, H., Goesmann, A., Frei, M., and Wissuwa, M. (2012). Root metabolic response of rice (Oryza sativa L.) genotypes with contrasting tolerance to zinc deficiency and bicarbonate excess. Planta 236, 959-973.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490949
Zschuttig, A., Zimmermann, K., Blom, J., Goesmann, A., Pohlmann, C., and Gunzer, F. (2012). Identification and Characterization of Microcin S, a New Antibacterial Peptide Produced by Probiotic Escherichia coli G3/10. PLoS ONE 7, e33351.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2527519
Ruijter, J. M., Pfaffl, M. W., Zhao, S., Spiess, A. N., Boggy, G., Blom, J., Rutledge, R. G., Sisti, D., Lievens, A., De Preter, K., et al. (2012). Evaluation of qPCR curve analysis methods for reliable biomarker discovery: Bias, resolution, precision, and implications. Methods. A companion to methods in enzymology (San Diego, Calif.) 59, 32-46.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2530221
Jankowitsch, F., Schwarz, J., Rückert, C., Gust, B., Szczepanowski, R., Blom, J., Pelzer, S., Kalinowski, J., and Mack, M. (2012). The genome sequence of the bacterium Streptomyces davawensis JCM 4913 and heterologous production of the unique antibiotic roseoflavin. Journal of bacteriology 194, 6818-6827.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2471858
Ausec, L., Zakrzewski, M., Goesmann, A., Schlüter, A., and Mandic-Mulec, I. (2012). Correction: bioinformatic analysis reveals high diversity of bacterial genes for laccase-like enzymes. PLoS ONE 7.
PUB | DOI | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2553455
De Maayer, P., Chan, W. - Y., Blom, J., Venter, S. N., Duffy, B., Smits, T. H. M., and Coutinho, T. A. (2012). The large universal Pantoea plasmid LPP-1 plays a major role in biological and ecological diversification. Bmc Genomics 13, 625.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490535
Heinl, S., Wibberg, D., Eikmeyer, F. G., Szczepanowski, R., Blom, J., Linke, B., Goesmann, A., Grabherr, R., Schwab, H., Pühler, A., et al. (2012). Insights into the completely annotated genome of Lactobacillus buchneri CD034, a strain isolated from stable grass silage. Journal of Biotechnology 161, 153-166.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2471681
Rademacher, A., Zakrzewski, M., Schlüter, A., Schonberg, M., Szczepanowski, R., Goesmann, A., Pühler, A., and Klocke, M. (2012). Characterization of microbial biofilms in a thermophilic biogas system by high-throughput metagenome sequencing. FEMS Microbiology Ecology 79, 785-799.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2513256
Filippini, M., Qi, W., Blom, J., Goesmann, A., Smits, T. H. M., and Bagheri, H. C. (2012). Genome Sequence of Fibrella aestuarina BUZ 2T, a Filamentous Marine Bacterium. Journal of bacteriology 194, 3555.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498232
Trötschel, C., Albaum, S., Wolff, D., Schröder, S., Goesmann, A., Nattkemper, T. W., and Poetsch, A. (2012). Protein turnover quantification in a multi-labeling approach - from data calculation to evaluation. Molecular & Cellular Proteomics 11, 512-526.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2487853
Brankatschk, K., Blom, J., Goesmann, A., Smits, T. H. M., and Duffy, B. (2012). Comparative genomic analysis of Salmonella enterica subsp. enterica serovar Weltevreden foodborne strains with other serovars. International journal of food microbiology 155, 247-256.
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