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154 Publikationen

2015 | Bielefelder E-Dissertation | PUB-ID: 2786037
Hilker, R. (2015). Development of a read mapping analysis software and computational pan genome analysis of 20 Pseudomonas aeruginosa strains. Bielefeld: Bielefeld University.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2656773
Rupp, O., Becker, J., Brinkrolf, K., Timmermann, C., Borth, N., Pühler, A., Noll, T., et al. (2014). Construction of a Public CHO Cell Line Transcript Database Using Versatile Bioinformatics Analysis Pipelines. PLoS ONE, 9(1), e85568. doi:10.1371/journal.pone.0085568
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2643946
Dohm, J. C., Minoche, A. E., Holtgräwe, D., Capella-Gutiérrez, S., Zakrzewski, F., Tafer, H., Rupp, O., et al. (2014). The genome of the recently domesticated crop plant sugar beet (Beta vulgaris). Nature, 505(7484), 546-549. doi:10.1038/nature12817
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2651944
Tielen, P., Wibberg, D., Blom, J., Rosin, N., Meyer, A. - K., Bunk, B., Schobert, M., et al. (2014). Genome Sequence of the Small-Colony Variant Pseudomonas aeruginosa MH27, Isolated from a Chronic Urethral Catheter Infection. Genome announcements, 2(1). doi:10.1128/genomeA.01174-13
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2691732
Klippel, B., Sahm, K., Basner, A., Wiebusch, S., John, P., Lorenz, U., Peters, A., et al. (2014). Carbohydrate-active enzymes identified by metagenomic analysis of deep-sea sediment bacteria. Extremophiles, 18(5), 853-863. doi:10.1007/s00792-014-0676-3
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2555342
He, P., Hao, K., Blom, J., Rückert, C., Vater, J., Mao, Z., Wu, Y., et al. (2013). Genome sequence of the plant growth promoting strain Bacillus amyloliquefaciens subsp. plantarum B9601-Y2 and expression of mersacidin and other secondary metabolites. Journal of biotechnology, 164(2), 281-291. doi:10.1016/j.jbiotec.2012.12.014
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2552500
Soares, S. C., Silva, A., Trost, E., Blom, J., Ramos, R., Carneiro, A., Ali, A., et al. (2013). The Pan-Genome of the Animal Pathogen Corynebacterium pseudotuberculosis Reveals Differences in Genome Plasticity between the Biovar ovis and equi Strains. PLoS ONE, 8(1), e53818. doi:10.1371/journal.pone.0053818
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2549908
Wibberg, D., Jelonek, L., Rupp, O., Kröber, M., Eikmeyer, F. G., Goesmann, A., Hartmann, A., et al. (2013). Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14. Journal of Biotechnology, 167(2), 142-155. doi:10.1016/j.jbiotec.2012.12.010
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2602756
Smits, T. H. M., Rezzonico, F., López, M. M., Blom, J., Goesmann, A., Frey, J. E., & Duffy, B. (2013). Phylogenetic position and virulence apparatus of the pear flower necrosis pathogen Erwinia piriflorinigrans CFBP 5888(T) as assessed by comparative genomics. Systematic and applied microbiology, 36(7), 449-456. doi:10.1016/j.syapm.2013.04.003
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2606943
Vences, M., Hauswaldt, S., Steinfartz, S., Rupp, O., Goesmann, A., Künzel, S., Orozco-Terwengel, P., et al. (2013). Radically different phylogeographies and patterns of genetic variation in two European brown frogs, genus Rana. Molecular phylogenetics and evolution, 68(3), 657-670. doi:10.1016/j.ympev.2013.04.014
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2641228
Jünemann, S., Sedlazeck, F. J., Prior, K., Albersmeier, A., John, U., Kalinowski, J., Mellmann, A., et al. (2013). Corrigendum: Updating benchtop sequencing performance comparison. Nature biotechnology, 31(12), 1148. doi:10.1038/nbt1213-1148e
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2633427
Wibberg, D., Blom, J., Rückert, C., Winkler, A., Albersmeier, A., Pühler, A., Schlüter, A., et al. (2013). Draft Genome Sequence of Sinorhizobium meliloti RU11/001, a model organism for flagellum structure, motility and chemotaxis. Journal of Biotechnology, 168(4), 731-733. doi:10.1016/j.jbiotec.2013.10.015
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2637220
Wu, H., Qiao, J., Blom, J., Rückert, C., Reva, O., Gao, X., & Borriss, R. (2013). The Rhizobacterium Bacillus amyloliquefaciens subsp. plantarum NAU-B3 Contains a Large Inversion within the Central Portion of the Genome. Genome announcements, 1(6), e00941-13. doi:10.1128/genomeA.00941-13
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2632946
Köhler, K. A. K., Rückert, C., Schatschneider, S., Vorhölter, F. - J., Szczepanowski, R., Blank, L. M., Niehaus, K., et al. (2013). Complete genome sequence of Pseudomonas sp. strain VLB120 a solvent tolerant, styrene degrading bacterium, isolated from forest soil. Journal of Biotechnology, 168(4), 729-730. doi:10.1016/j.jbiotec.2013.10.016
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2622238
Barbe, S., Llop, P., Blom, J., Cabrefiga, J., Goesmann, A., Duffy, B., Montesinos, E., et al. (2013). Complete sequence of Erwinia piriflorinigrans plasmids pEPIR37 and pEPIR5 and role of pEPIR37 in pathogen virulence. Plant Pathology, 62(4), 786-798. doi:10.1111/ppa.12002
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2615581
Brinkrolf, K., Rupp, O., Laux, H., Kollin, F., Ernst, W., Linke, B., Kofler, R., et al. (2013). Chinese hamster genome sequenced from sorted chromosomes. Nature Biotechnology, 31(8), 694-695. doi:10.1038/nbt.2645
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2013 | Bielefelder E-Dissertation | PUB-ID: 2604883
Blom, J. (2013). Comparative genomics on gene and single nucleotide level. Bielefeld: Universitätsbibliothek.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2564601
Riedel, T., Gómez-Consarnau, L., Tomasch, J., Martin, M., Jarek, M., González, J. M., Spring, S., et al. (2013). Genomics and Physiology of a Marine Flavobacterium Encoding a Proteorhodopsin and a Xanthorhodopsin-Like Protein. PLOS ONE, 8(3), e57487. doi:10.1371/journal.pone.0057487
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2558460
Roetzer, A., Diel, R., Kohl, T. A., Rückert, C., Nübel, U., Blom, J., Wirth, T., et al. (2013). Whole Genome Sequencing versus Traditional Genotyping for Investigation of a Mycobacterium tuberculosis Outbreak: A Longitudinal Molecular Epidemiological Study. PLoS medicine, 10(2), e1001387. doi:10.1371/journal.pmed.1001387
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560837
Fritzenwanker, M., Kuenne, C., Billion, A., Hain, T., Zimmermann, K., Goesmann, A., Chakraborty, T., et al. (2013). Complete Genome Sequence of the Probiotic Enterococcus faecalis Symbioflor 1 Clone DSM 16431. Genome Announcements, 1(1), e00165-12. doi:10.1128/genomeA.00165-12
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2576080
Toepel, J., Illmer-Kephalides, M., Jaenicke, S., Straube, J., May, P., Goesmann, A., & Kruse, O. (2013). New insights into Chlamydomonas reinhardtii hydrogen production processes by combined microarray/RNA-seq transcriptomics. Plant Biotechnology Journal, 11(6), 717-733. doi:10.1111/pbi.12062
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2576539
Wichmann, F., Vorhölter, F. - J., Hersemann, L., Widmer, F., Blom, J., Niehaus, K., Reinhard, S., et al. (2013). The noncanonical type III secretion system of Xanthomonas translucens pv. graminis is essential for forage grass infection. Molecular plant pathology, 14(6), 576-588. doi:10.1111/mpp.12030
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2631956
Rückert, C., Szczepanowski, R., Albersmeier, A., Goesmann, A., Iftime, D., Musiol, E. M., Blin, K., et al. (2013). Complete genome sequence of the kirromycin producer Streptomyces collinus Tü 365 consisting of a linear chromosome and two linear plasmids. Journal of Biotechnology, 168(4), 739-740. doi:10.1016/j.jbiotec.2013.10.004
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2566922
Jünemann, S., Sedlazeck, F. J., Prior, K., Albersmeier, A., John, U., Kalinowski, J., Mellmann, A., et al. (2013). Updating benchtop sequencing performance comparison. Nature Biotechnology, 31(4), 294-296. doi:10.1038/nbt.2522
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2635526
Koeck, D. E., Wibberg, D., Koellmeier, T., Blom, J., Jaenicke, S., Winkler, A., Albersmeier, A., et al. (2013). Draft genome sequence of the cellulolytic Clostridium thermocellum wild-type strain BC1 playing a role in cellulosic biomass degradation. Journal of Biotechnology, 168(1), 62-63. doi:10.1016/j.jbiotec.2013.08.011
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2557938
Mann, R. A., Smits, T. H. M., Bühlmann, A., Blom, J., Goesmann, A., Frey, J. E., Plummer, K. M., et al. (2013). Comparative Genomics of 12 Strains of Erwinia amylovora Identifies a Pan-Genome with a Large Conserved Core. PLOS ONE, 8(2), e55644. doi:10.1371/journal.pone.0055644
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2561776
Trötschel, C., Albaum, S., & Poetsch, A. (2013). Proteome turnover in bacteria: current status for Corynebacterium glutamicum and related bacteria. Microbial biotechnology, 708-719. doi:10.1111/1751-7915.12035
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2554079
Kuenne, C., Billion, A., Mraheil, M. A., Strittmatter, A., Daniel, R., Goesmann, A., Barbuddhe, S., et al. (2013). Reassessment of the Listeria monocytogenes pan-genome reveals dynamic integration hotspots and mobile genetic elements as major components of the accessory genome. BMC Genomics, 14(1), 47. doi:10.1186/1471-2164-14-47
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548286
Luque-Almagro, V. M., Acera, F., Igeño, M. I., Wibberg, D., Roldán, M. D., Sáez, L. P., Hennig, M., et al. (2013). Draft whole genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344. Environmental Microbiology, 15(1), 253-270. doi:10.1111/j.1462-2920.2012.02875.x
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645668
Bogen, C., Al-Dilaimi, A., Albersmeier, A., Wichmann, J., Grundmann, M., Rupp, O., Lauersen, K. J., et al. (2013). Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics, 14(1), 926. doi:10.1186/1471-2164-14-926
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2635520
Dam, B., Dam, S., Blom, J., & Liesack, W. (2013). Genome Analysis Coupled with Physiological Studies Reveals a Diverse Nitrogen Metabolism in Methylocystis sp Strain SC2. Plos One, 8(10), e74767. doi:10.1371/journal.pone.0074767
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2610129
Kessler, N., Bonte, A., Langenkämper, G., Niehaus, K., Goesmann, A., & Nattkemper, T. W. (2013). MeltDB 2.0 - Advances of the metabolomics software system. Bioinformatics, 29(19), 2452-2459. doi:10.1093/bioinformatics/btt414
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2607974
Niu, B., Vater, J., Rückert, C., Blom, J., Lehmann, M., Ru, J. - J., Chen, X. - H., et al. (2013). Polymyxin P is the active principle in suppressing phytopathogenic Erwinia spp. by the biocontrol rhizobacterium Paenibacillus polymyxa M-1. BMC microbiology, 13(1), 137. doi:10.1186/1471-2180-13-137
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529309
Bolzan de Campos, S., Youn, J. - W., Farina, R., Jaenicke, S., Jünemann, S., Szczepanowski, R., Beneduzi, A., et al. (2013). Changes in Root Bacterial Communities Associated to Two Different Development Stages of Canola (*Brassica napus* L. var oleifera) Evaluated through Next-Generation Sequencing. Microbial Ecology, 65(3), 593-601. doi:10.1007/s00248-012-0132-9
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529202
Zakrzewski, M., Bekel, T., Ander, C., Pühler, A., Rupp, O., Stoye, J., Schlüter, A., et al. (2013). MetaSAMS - A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets. Journal of Biotechnology, 167(2), 156-165. doi:10.1016/j.jbiotec.2012.09.013
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2013 | Konferenzbeitrag | Im Druck | PUB-ID: 2538625
Bonte, A., Kessler, N., Nattkemper, T. W., Goesmann, A., Cecile, T., Mäder, P., Niehaus, K., et al. (In Press). Einsatz von Protein- und Metabolit-Profiling-Methoden zur Unterscheidung von ökologischem und konventionellem Weizen. Presented at the 12. Wissenschaftstagung Ökologischer Landbau „Ideal und Wirklichkeit – Perspektiven Ökologischer Landbewirtschaftung“, Bonn, Germany.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498160
Schröder, J., Maus, I., Meyer, K., Wördemann, S., Blom, J., Jaenicke, S., Schneider, J., et al. (2012). Complete genome sequence, lifestyle, and multi-drug resistance of the human pathogen Corynebacterium resistens DSM 45100 isolated from blood samples of a leukemia patient. BMC Genomics, 13(1), 141. doi:10.1186/1471-2164-13-141
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2484618
Zakrzewski, M., Goesmann, A., Jaenicke, S., Jünemann, S., Eikmeyer, F. G., Szczepanowski, R., Al-Soud, W. A., et al. (2012). Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing. Journal of Biotechnology, 158(4), 248-258. doi:10.1016/j.jbiotec.2012.01.020
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2513347
Trost, E., Blom, J., de Castro Soares, S., Huang, I. - H., Al-Dilaimi, A., Schröder, J., Jaenicke, S., et al. (2012). Pangenomic Study of Corynebacterium diphtheriae That Provides Insights into the Genomic Diversity of Pathogenic Isolates from Cases of Classical Diphtheria, Endocarditis, and Pneumonia. Journal of bacteriology, 194(12), 3199-3215. doi:10.1128/JB.00183-12
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500990
Rose, M. T., Rose, T. J., Pariasca-Tanaka, J., Yoshihashi, T., Neuweger, H., Goesmann, A., Frei, M., et al. (2012). Root metabolic response of rice (Oryza sativa L.) genotypes with contrasting tolerance to zinc deficiency and bicarbonate excess. Planta, 236(4), 959-973. doi:10.1007/s00425-012-1648-4
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490949
Zschuttig, A., Zimmermann, K., Blom, J., Goesmann, A., Pohlmann, C., & Gunzer, F. (2012). Identification and Characterization of Microcin S, a New Antibacterial Peptide Produced by Probiotic Escherichia coli G3/10. PLoS ONE, 7(3), e33351. doi:10.1371/journal.pone.0033351
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2527519
Ruijter, J. M., Pfaffl, M. W., Zhao, S., Spiess, A. N., Boggy, G., Blom, J., Rutledge, R. G., et al. (2012). Evaluation of qPCR curve analysis methods for reliable biomarker discovery: Bias, resolution, precision, and implications. Methods. A companion to methods in enzymology (San Diego, Calif.), 59(1), 32-46. doi:10.1016/j.ymeth.2012.08.011
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2530221
Jankowitsch, F., Schwarz, J., Rückert, C., Gust, B., Szczepanowski, R., Blom, J., Pelzer, S., et al. (2012). The genome sequence of the bacterium Streptomyces davawensis JCM 4913 and heterologous production of the unique antibiotic roseoflavin. Journal of bacteriology, 194(24), 6818-6827. doi:10.1128/JB.01592-12
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2471858
Ausec, L., Zakrzewski, M., Goesmann, A., Schlüter, A., & Mandic-Mulec, I. (2012). Correction: bioinformatic analysis reveals high diversity of bacterial genes for laccase-like enzymes. PLoS ONE, 7(1). doi:10.1371/annotation/2c1232ba-94f0-4613-8486-0f430b1b47ed
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2553455
De Maayer, P., Chan, W. - Y., Blom, J., Venter, S. N., Duffy, B., Smits, T. H. M., & Coutinho, T. A. (2012). The large universal Pantoea plasmid LPP-1 plays a major role in biological and ecological diversification. Bmc Genomics, 13(1), 625. doi:10.1186/1471-2164-13-625
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490535
Heinl, S., Wibberg, D., Eikmeyer, F. G., Szczepanowski, R., Blom, J., Linke, B., Goesmann, A., et al. (2012). Insights into the completely annotated genome of Lactobacillus buchneri CD034, a strain isolated from stable grass silage. Journal of Biotechnology, 161(2), 153-166. doi:10.1016/j.jbiotec.2012.03.007
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2471681
Rademacher, A., Zakrzewski, M., Schlüter, A., Schonberg, M., Szczepanowski, R., Goesmann, A., Pühler, A., et al. (2012). Characterization of microbial biofilms in a thermophilic biogas system by high-throughput metagenome sequencing. FEMS Microbiology Ecology, 79(3), 785-799. doi:10.1111/j.1574-6941.2011.01265.x
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2513256
Filippini, M., Qi, W., Blom, J., Goesmann, A., Smits, T. H. M., & Bagheri, H. C. (2012). Genome Sequence of Fibrella aestuarina BUZ 2T, a Filamentous Marine Bacterium. Journal of bacteriology, 194(13), 3555. doi:10.1128/JB.00550-12
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498232
Trötschel, C., Albaum, S., Wolff, D., Schröder, S., Goesmann, A., Nattkemper, T. W., & Poetsch, A. (2012). Protein turnover quantification in a multi-labeling approach - from data calculation to evaluation. Molecular & Cellular Proteomics, 11(8), 512-526. doi:10.1074/mcp.M111.014134
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2487853
Brankatschk, K., Blom, J., Goesmann, A., Smits, T. H. M., & Duffy, B. (2012). Comparative genomic analysis of Salmonella enterica subsp. enterica serovar Weltevreden foodborne strains with other serovars. International journal of food microbiology, 155(3), 247-256. doi:10.1016/j.ijfoodmicro.2012.01.024
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