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154 Publikationen

2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2576080
J. Toepel, M. Illmer-Kephalides, S. Jaenicke, J. Straube, P. May, A. Goesmann, and O. Kruse, “New insights into Chlamydomonas reinhardtii hydrogen production processes by combined microarray/RNA-seq transcriptomics”, Plant Biotechnology Journal, 2013, 11, 717-733.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2631956
C. Rückert, R. Szczepanowski, A. Albersmeier, A. Goesmann, D. Iftime, E. M. Musiol, K. Blin, W. Wohlleben, A. Pühler, J. Kalinowski, et al., “Complete genome sequence of the kirromycin producer Streptomyces collinus Tü 365 consisting of a linear chromosome and two linear plasmids”, Journal of Biotechnology, 2013, 168, 739-740.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2576539
F. Wichmann, F. - J. Vorhölter, L. Hersemann, F. Widmer, J. Blom, K. Niehaus, S. Reinhard, C. Conradin, and R. Kölliker, “The noncanonical type III secretion system of Xanthomonas translucens pv. graminis is essential for forage grass infection”, Molecular plant pathology, 2013, 14, 576-588.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2635526
D. E. Koeck, D. Wibberg, T. Koellmeier, J. Blom, S. Jaenicke, A. Winkler, A. Albersmeier, V. V. Zverlov, A. Pühler, W. H. Schwarz, et al., “Draft genome sequence of the cellulolytic Clostridium thermocellum wild-type strain BC1 playing a role in cellulosic biomass degradation”, Journal of Biotechnology, 2013, 168, 62-63.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2566922
S. Jünemann, F. J. Sedlazeck, K. Prior, A. Albersmeier, U. John, J. Kalinowski, A. Mellmann, A. Goesmann, A. von Haeseler, J. Stoye, et al., “Updating benchtop sequencing performance comparison”, Nature Biotechnology, 2013, 31, 294-296.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2557938
R. A. Mann, T. H. M. Smits, A. Bühlmann, J. Blom, A. Goesmann, J. E. Frey, K. M. Plummer, S. V. Beer, J. Luck, B. Duffy, et al., “Comparative Genomics of 12 Strains of Erwinia amylovora Identifies a Pan-Genome with a Large Conserved Core”, PLOS ONE, 2013, 8, e55644.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2561776
C. Trötschel, S. Albaum, and A. Poetsch, “Proteome turnover in bacteria: current status for Corynebacterium glutamicum and related bacteria”, Microbial biotechnology, 2013, 708-719.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2554079
C. Kuenne, A. Billion, M. A. Mraheil, A. Strittmatter, R. Daniel, A. Goesmann, S. Barbuddhe, T. Hain, and T. Chakraborty, “Reassessment of the Listeria monocytogenes pan-genome reveals dynamic integration hotspots and mobile genetic elements as major components of the accessory genome”, BMC Genomics, 2013, 14, 47.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548286
V. M. Luque-Almagro, F. Acera, M. I. Igeño, D. Wibberg, M. D. Roldán, L. P. Sáez, M. Hennig, A. Quesada, M. J. Huertas, J. Blom, et al., “Draft whole genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344”, Environmental Microbiology, 2013, 15, 253-270.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645668 OA
C. Bogen, A. Al-Dilaimi, A. Albersmeier, J. Wichmann, M. Grundmann, O. Rupp, K. J. Lauersen, O. Blifernez-Klassen, J. Kalinowski, A. Goesmann, et al., “Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production”, BMC Genomics, 2013, 14, 926.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2635520
B. Dam, S. Dam, J. Blom, and W. Liesack, “Genome Analysis Coupled with Physiological Studies Reveals a Diverse Nitrogen Metabolism in Methylocystis sp Strain SC2”, Plos One, 2013, 8, e74767.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2610129
N. Kessler, A. Bonte, G. Langenkämper, K. Niehaus, A. Goesmann, and T. W. Nattkemper, “MeltDB 2.0 - Advances of the metabolomics software system”, Bioinformatics, 2013, 29, 2452-2459.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2607974
B. Niu, J. Vater, C. Rückert, J. Blom, M. Lehmann, J. - J. Ru, X. - H. Chen, Q. Wang, and R. Borriss, “Polymyxin P is the active principle in suppressing phytopathogenic Erwinia spp. by the biocontrol rhizobacterium Paenibacillus polymyxa M-1”, BMC microbiology, 2013, 13, 137.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529309
S. Bolzan de Campos, J. - W. Youn, R. Farina, S. Jaenicke, S. Jünemann, R. Szczepanowski, A. Beneduzi, L. K. Vargas, V. F. Wendisch, and L. Passaglia, “Changes in Root Bacterial Communities Associated to Two Different Development Stages of Canola (*Brassica napus* L. var oleifera) Evaluated through Next-Generation Sequencing”, Microbial Ecology, 2013, 65, 593-601.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529202
M. Zakrzewski, T. Bekel, C. Ander, A. Pühler, O. Rupp, J. Stoye, A. Schlüter, and A. Goesmann, “MetaSAMS - A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets”, Journal of Biotechnology, 2013, 167, 156-165.
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2013 | Konferenzbeitrag | Im Druck | PUB-ID: 2538625
A. Bonte, N. Kessler, T. W. Nattkemper, A. Goesmann, T. Cecile, P. Mäder, K. Niehaus, and G. Langenkämper, In Press.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498160 OA
J. Schröder, I. Maus, K. Meyer, S. Wördemann, J. Blom, S. Jaenicke, J. Schneider, E. Trost, and A. Tauch, “Complete genome sequence, lifestyle, and multi-drug resistance of the human pathogen Corynebacterium resistens DSM 45100 isolated from blood samples of a leukemia patient”, BMC Genomics, 2012, 13, : 141.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2484618
M. Zakrzewski, A. Goesmann, S. Jaenicke, S. Jünemann, F. G. Eikmeyer, R. Szczepanowski, W. A. Al-Soud, S. Sørensen, A. Pühler, and A. Schlüter, “Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing”, Journal of Biotechnology, 2012, 158, 248-258.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2513347
E. Trost, J. Blom, S. de Castro Soares, I. - H. Huang, A. Al-Dilaimi, J. Schröder, S. Jaenicke, F. A. Dorella, F. S. Rocha, A. Miyoshi, et al., “Pangenomic Study of Corynebacterium diphtheriae That Provides Insights into the Genomic Diversity of Pathogenic Isolates from Cases of Classical Diphtheria, Endocarditis, and Pneumonia”, Journal of bacteriology, 2012, 194, 3199-3215.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500990
M. T. Rose, T. J. Rose, J. Pariasca-Tanaka, T. Yoshihashi, H. Neuweger, A. Goesmann, M. Frei, and M. Wissuwa, “Root metabolic response of rice (Oryza sativa L.) genotypes with contrasting tolerance to zinc deficiency and bicarbonate excess”, Planta, 2012, 236, 959-973.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490949
A. Zschuttig, K. Zimmermann, J. Blom, A. Goesmann, C. Pohlmann, and F. Gunzer, “Identification and Characterization of Microcin S, a New Antibacterial Peptide Produced by Probiotic Escherichia coli G3/10”, PLoS ONE, 2012, 7, e33351.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2530221
F. Jankowitsch, J. Schwarz, C. Rückert, B. Gust, R. Szczepanowski, J. Blom, S. Pelzer, J. Kalinowski, and M. Mack, “The genome sequence of the bacterium Streptomyces davawensis JCM 4913 and heterologous production of the unique antibiotic roseoflavin”, Journal of bacteriology, 2012, 194, 6818-6827.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2527519
J. M. Ruijter, M. W. Pfaffl, S. Zhao, A. N. Spiess, G. Boggy, J. Blom, R. G. Rutledge, D. Sisti, A. Lievens, K. De Preter, et al., “Evaluation of qPCR curve analysis methods for reliable biomarker discovery: Bias, resolution, precision, and implications”, Methods. A companion to methods in enzymology (San Diego, Calif.), 2012, 59, 32-46.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2471858
L. Ausec, M. Zakrzewski, A. Goesmann, A. Schlüter, and I. Mandic-Mulec, “Correction: bioinformatic analysis reveals high diversity of bacterial genes for laccase-like enzymes”, PLoS ONE, 2012, 7.
PUB | DOI | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2553455
P. De Maayer, W. - Y. Chan, J. Blom, S. N. Venter, B. Duffy, T. H. M. Smits, and T. A. Coutinho, “The large universal Pantoea plasmid LPP-1 plays a major role in biological and ecological diversification”, Bmc Genomics, 2012, 13, 625.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490535
S. Heinl, D. Wibberg, F. G. Eikmeyer, R. Szczepanowski, J. Blom, B. Linke, A. Goesmann, R. Grabherr, H. Schwab, A. Pühler, et al., “Insights into the completely annotated genome of Lactobacillus buchneri CD034, a strain isolated from stable grass silage”, Journal of Biotechnology, 2012, 161, 153-166.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2471681
A. Rademacher, M. Zakrzewski, A. Schlüter, M. Schonberg, R. Szczepanowski, A. Goesmann, A. Pühler, and M. Klocke, “Characterization of microbial biofilms in a thermophilic biogas system by high-throughput metagenome sequencing”, FEMS Microbiology Ecology, 2012, 79, 785-799.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2513256
M. Filippini, W. Qi, J. Blom, A. Goesmann, T. H. M. Smits, and H. C. Bagheri, “Genome Sequence of Fibrella aestuarina BUZ 2T, a Filamentous Marine Bacterium”, Journal of bacteriology, 2012, 194, 3555.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498232
C. Trötschel, S. Albaum, D. Wolff, S. Schröder, A. Goesmann, T. W. Nattkemper, and A. Poetsch, “Protein turnover quantification in a multi-labeling approach - from data calculation to evaluation”, Molecular & Cellular Proteomics, 2012, 11, 512-526.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2487853
K. Brankatschk, J. Blom, A. Goesmann, T. H. M. Smits, and B. Duffy, “Comparative genomic analysis of Salmonella enterica subsp. enterica serovar Weltevreden foodborne strains with other serovars”, International journal of food microbiology, 2012, 155, 247-256.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2486204
J. Blom, C. Rückert, B. Niu, Q. Wang, and R. Borriss, “The Complete Genome of Bacillus amyloliquefaciens subsp. plantarum CAU B946 Contains a Gene Cluster for Nonribosomal Synthesis of Iturin A”, Journal of bacteriology, 2012, 194, 1845-1846.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2478526
M. Hackl, V. Jadhav, T. Jakobi, O. Rupp, K. Brinkrolf, A. Goesmann, A. Pühler, T. Noll, N. Borth, and J. Grillari, “Computational identification of microRNA gene loci and precursor microRNA sequences in CHO cell lines”, Journal of Biotechnology, 2012, 158, 151-155.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2405255
M. Persicke, C. Rückert, J. Plassmeier, L. Stutz, N. Kessler, J. Kalinowski, A. Goesmann, and H. Neuweger, “MSEA: metabolite set enrichment analysis in the MeltDB metabolomics software platform: metabolic profiling of Corynebacterium glutamicum as an example”, Metabolomics, 2012, 8, 310-322.
PUB | DOI | WoS
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2510984
R. Hilker, C. Sickinger, C. N. S. Pedersen, and J. Stoye, “UniMoG - A unifying framework for genomic distance calculation and sorting based on DCJ”, Bioinformatics, 2012, 28, 2509-2511.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500959
T. Kahlke, A. Goesmann, E. Hjerde, N. P. Willassen, and P. Haugen, “Unique core genomes of the bacterial family vibrionaceae: Insights into niche adaptation and speciation”, BMC genomics, 2012, 13, 179.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500966
T. Hain, R. Ghai, A. Billion, C. T. Kuenne, C. Steinweg, B. Izar, W. Mohamed, M. Mraheil, E. Domann, S. Schaffrath, et al., “Comparative genomics and transcriptomics of lineages I, II, and III strains of Listeria monocytogenes”, BMC Genomics, 2012, 13, 144.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2544774
J. Schneider, H. Andrea, J. Blom, S. Jaenicke, C. Rückert, C. Schorsch, R. Szczepanowski, M. Farwick, A. Goesmann, A. Pühler, et al., “Draft Genome Sequence of Wickerhamomyces ciferrii NRRL Y-1031 F-60-10”, Eukaryotic Cell, 2012, 11, 1582-1583.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500937
F. Rezzonico, A. Braun-Kiewnick, R. A. Mann, B. Rodoni, A. Goesmann, B. Duffy, and T. H. M. Smits, “Lipopolysaccharide biosynthesis genes discriminate between Rubus- and Spiraeoideae-infective genotypes of Erwinia amylovora”, Molecular plant pathology, 2012, 13, 975-984.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501081
P. De Maayer, W. Y. Chan, F. Rezzonico, A. Bühlmann, S. N. Venter, J. Blom, A. Goesmann, J. E. Frey, T. H. M. Smits, B. Duffy, et al., “Complete genome sequence of clinical isolate Pantoea ananatis LMG 5342”, Journal of Bacteriology, 2012, 194, 1615-1616.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2542210
V. R. Parreira, M. Costa, F. G. Eikmeyer, J. Blom, and J. F. Prescott, “Sequence of Two Plasmids from Clostridium perfringens Chicken Necrotic Enteritis Isolates and Comparison with C. perfringens Conjugative Plasmids”, PLoS ONE, 2012, 7, e49753.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526269 OA
T. Strobel, A. Al-Dilaimi, J. Blom, A. Gessner, J. Kalinowski, M. Luzhetska, A. Pühler, R. Szczepanowski, A. Bechthold, and C. Rückert, “Complete genome sequence of Saccharothrix espanaensis DSM 44229T and comparison to the other completely sequenced Pseudonocardiaceae”, BMC Genomics, 2012, 13, 465.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529610
S. Schork, A. Schlüter, J. Blom, S. Schneiker-Bekel, A. Pühler, A. Goesmann, M. Frosch, and C. Schoen, “Genome Sequence of a Neisseria meningitidis Capsule Null Locus Strain from the Clonal Complex of Sequence Type 198”, Journal of Bacteriology, 2012, 194, 5144-5145.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526281
M. Zischka, C. Kuenne, J. Blom, P. W. Dabrowski, B. Linke, T. Hain, A. Nitsche, A. Goesmann, J. Larsen, L. B. Jensen, et al., “Complete Genome Sequence of the Porcine Isolate Enterococcus faecalis D32”, Journal of Bacteriology, 2012, 194, 5490-5491.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526298
I. Maus, D. Wibberg, R. Stantscheff, F. G. Eikmeyer, A. Seffner, J. Boelter, R. Szczepanowski, J. Blom, S. Jaenicke, H. König, et al., “Complete Genome Sequence of the Hydrogenotrophic, Methanogenic Archaeon Methanoculleus bourgensis Strain MS2T, Isolated from a Sewage Sludge Digester”, Journal of Bacteriology, 2012, 194, 5487-5488.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526933
A. B. Dohrmann, M. Küting, S. Jünemann, S. Jaenicke, A. Schlüter, and C. C. Tebbe, “Importance of rare taxa for bacterial diversity in the rhizosphere of Bt- and conventional maize varieties”, The ISME journal, 2012, 7, 37-49.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2517230
S. Jünemann, K. Prior, R. Szczepanowski, I. Harks, B. Ehmke, A. Goesmann, J. Stoye, and D. Harmsen, “Bacterial Community Shift in Treated Periodontitis Patients Revealed by Ion Torrent 16S rRNA Gene Amplicon Sequencing”, PLoS ONE, 2012, 7, e41606.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500946
R. A. Mann, J. Blom, A. Bühlmann, K. M. Plummer, S. V. Beer, J. E. Luck, A. Goesmann, J. E. Frey, B. C. Rodoni, B. Duffy, et al., “Comparative analysis of the Hrp pathogenicity island of Rubus- and Spiraeoideae-infecting Erwinia amylovora strains identifies the IT region as a remnant of an integrative conjugative element”, Gene, 2012, 504, 6-12.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490286
U. Vogel, R. Szczepanowski, H. Claus, S. Jünemann, K. Prior, and D. Harmsen, “Ion Torrent PGM sequencing for genomic typing of Neisseria meningitidis for rapid determination of multiple layers of typing information”, Journal of clinical microbiology, 2012, 50, 1889-1894.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300063 OA
S. Albaum, H. Hahne, A. Otto, U. Haußmann, D. Becher, A. Poetsch, A. Goesmann, and T. W. Nattkemper, “A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application study”, Proteome Science, 2011, 9, 30.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2451800 OA
J. Toepel, S. Albaum, S. Arvidsson, A. Goesmann, M. La Russa, K. Rogge, and O. Kruse, “Construction and evaluation of a whole genome microarray of Chlamydomonas reinhardtii”, BMC Genomics, 2011, 12, 579-589.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 

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