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154 Publikationen

2015 | Bielefelder E-Dissertation | PUB-ID: 2786037 OA
R. Hilker, Development of a read mapping analysis software and computational pan genome analysis of 20 Pseudomonas aeruginosa strains, Bielefeld University, Bielefeld, 2015.
PUB | Dateien verfügbar
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2656773
O. Rupp, J. Becker, K. Brinkrolf, C. Timmermann, N. Borth, A. Pühler, T. Noll, and A. Goesmann, “Construction of a Public CHO Cell Line Transcript Database Using Versatile Bioinformatics Analysis Pipelines”, PLoS ONE, 2014, 9, e85568.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2643946
J. C. Dohm, A. E. Minoche, D. Holtgräwe, S. Capella-Gutiérrez, F. Zakrzewski, H. Tafer, O. Rupp, T. Rosleff Sörensen, R. Stracke, R. Reinhardt, et al., “The genome of the recently domesticated crop plant sugar beet (Beta vulgaris)”, Nature, 2014, 505, 546-549.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2651944
P. Tielen, D. Wibberg, J. Blom, N. Rosin, A. - K. Meyer, B. Bunk, M. Schobert, R. Tüpker, S. Schatschneider, C. Rückert, et al., “Genome Sequence of the Small-Colony Variant Pseudomonas aeruginosa MH27, Isolated from a Chronic Urethral Catheter Infection”, Genome announcements, 2014, 2.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2691732
B. Klippel, K. Sahm, A. Basner, S. Wiebusch, P. John, U. Lorenz, A. Peters, F. Abe, K. Takahashi, O. Kaiser, et al., “Carbohydrate-active enzymes identified by metagenomic analysis of deep-sea sediment bacteria”, Extremophiles, 2014, 18, 853-863.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2555342
P. He, K. Hao, J. Blom, C. Rückert, J. Vater, Z. Mao, Y. Wu, M. Hou, P. He, Y. He, et al., “Genome sequence of the plant growth promoting strain Bacillus amyloliquefaciens subsp. plantarum B9601-Y2 and expression of mersacidin and other secondary metabolites”, Journal of biotechnology, 2013, 164, 281-291.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2552500
S. C. Soares, A. Silva, E. Trost, J. Blom, R. Ramos, A. Carneiro, A. Ali, A. R. Santos, A. C. Pinto, C. Diniz, et al., “The Pan-Genome of the Animal Pathogen Corynebacterium pseudotuberculosis Reveals Differences in Genome Plasticity between the Biovar ovis and equi Strains”, PLoS ONE, 2013, 8, : e53818.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2549908
D. Wibberg, L. Jelonek, O. Rupp, M. Kröber, F. G. Eikmeyer, A. Goesmann, A. Hartmann, R. Borriss, R. Grosch, A. Pühler, et al., “Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14”, Journal of Biotechnology, 2013, 167, 142-155.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2602756
T. H. M. Smits, F. Rezzonico, M. M. López, J. Blom, A. Goesmann, J. E. Frey, and B. Duffy, “Phylogenetic position and virulence apparatus of the pear flower necrosis pathogen Erwinia piriflorinigrans CFBP 5888(T) as assessed by comparative genomics”, Systematic and applied microbiology, 2013, 36, 449-456.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2606943
M. Vences, S. Hauswaldt, S. Steinfartz, O. Rupp, A. Goesmann, S. Künzel, P. Orozco-Terwengel, D. R. Vieites, S. Nieto-Roman, S. Haas, et al., “Radically different phylogeographies and patterns of genetic variation in two European brown frogs, genus Rana”, Molecular phylogenetics and evolution, 2013, 68, 657-670.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2641228
S. Jünemann, F. J. Sedlazeck, K. Prior, A. Albersmeier, U. John, J. Kalinowski, A. Mellmann, A. Goesmann, A. von Haeseler, J. Stoye, et al., “Corrigendum: Updating benchtop sequencing performance comparison”, Nature biotechnology, 2013, 31, 1148.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2633427
D. Wibberg, J. Blom, C. Rückert, A. Winkler, A. Albersmeier, A. Pühler, A. Schlüter, and B. E. Scharf, “Draft Genome Sequence of Sinorhizobium meliloti RU11/001, a model organism for flagellum structure, motility and chemotaxis”, Journal of Biotechnology, 2013, 168, 731-733.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2637220
H. Wu, J. Qiao, J. Blom, C. Rückert, O. Reva, X. Gao, and R. Borriss, “The Rhizobacterium Bacillus amyloliquefaciens subsp. plantarum NAU-B3 Contains a Large Inversion within the Central Portion of the Genome”, Genome announcements, 2013, 1, e00941-13.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2632946
K. A. K. Köhler, C. Rückert, S. Schatschneider, F. - J. Vorhölter, R. Szczepanowski, L. M. Blank, K. Niehaus, A. Goesmann, A. Pühler, J. Kalinowski, et al., “Complete genome sequence of Pseudomonas sp. strain VLB120 a solvent tolerant, styrene degrading bacterium, isolated from forest soil”, Journal of Biotechnology, 2013, 168, 729-730.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2622238
S. Barbe, P. Llop, J. Blom, J. Cabrefiga, A. Goesmann, B. Duffy, E. Montesinos, T. H. M. Smits, and M. M. Lopez, “Complete sequence of Erwinia piriflorinigrans plasmids pEPIR37 and pEPIR5 and role of pEPIR37 in pathogen virulence”, Plant Pathology, 2013, 62, 786-798.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2615581
K. Brinkrolf, O. Rupp, H. Laux, F. Kollin, W. Ernst, B. Linke, R. Kofler, S. Romand, F. Hesse, W. E. Budach, et al., “Chinese hamster genome sequenced from sorted chromosomes”, Nature Biotechnology, 2013, 31, 694-695.
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2013 | Bielefelder E-Dissertation | PUB-ID: 2604883 OA
J. Blom, Comparative genomics on gene and single nucleotide level, Universitätsbibliothek, Bielefeld, 2013.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2564601
T. Riedel, L. Gómez-Consarnau, J. Tomasch, M. Martin, M. Jarek, J. M. González, S. Spring, M. Rohlfs, T. Brinkhoff, H. Cypionka, et al., “Genomics and Physiology of a Marine Flavobacterium Encoding a Proteorhodopsin and a Xanthorhodopsin-Like Protein”, PLOS ONE, 2013, 8, e57487.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2558460
A. Roetzer, R. Diel, T. A. Kohl, C. Rückert, U. Nübel, J. Blom, T. Wirth, S. Jaenicke, S. Schuback, S. Rüsch-Gerdes, et al., “Whole Genome Sequencing versus Traditional Genotyping for Investigation of a Mycobacterium tuberculosis Outbreak: A Longitudinal Molecular Epidemiological Study”, PLoS medicine, 2013, 10, e1001387.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560837
M. Fritzenwanker, C. Kuenne, A. Billion, T. Hain, K. Zimmermann, A. Goesmann, T. Chakraborty, and E. Domann, “Complete Genome Sequence of the Probiotic Enterococcus faecalis Symbioflor 1 Clone DSM 16431”, Genome Announcements, 2013, 1, e00165-12.
PUB | DOI | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2576080
J. Toepel, M. Illmer-Kephalides, S. Jaenicke, J. Straube, P. May, A. Goesmann, and O. Kruse, “New insights into Chlamydomonas reinhardtii hydrogen production processes by combined microarray/RNA-seq transcriptomics”, Plant Biotechnology Journal, 2013, 11, 717-733.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2631956
C. Rückert, R. Szczepanowski, A. Albersmeier, A. Goesmann, D. Iftime, E. M. Musiol, K. Blin, W. Wohlleben, A. Pühler, J. Kalinowski, et al., “Complete genome sequence of the kirromycin producer Streptomyces collinus Tü 365 consisting of a linear chromosome and two linear plasmids”, Journal of Biotechnology, 2013, 168, 739-740.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2576539
F. Wichmann, F. - J. Vorhölter, L. Hersemann, F. Widmer, J. Blom, K. Niehaus, S. Reinhard, C. Conradin, and R. Kölliker, “The noncanonical type III secretion system of Xanthomonas translucens pv. graminis is essential for forage grass infection”, Molecular plant pathology, 2013, 14, 576-588.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2635526
D. E. Koeck, D. Wibberg, T. Koellmeier, J. Blom, S. Jaenicke, A. Winkler, A. Albersmeier, V. V. Zverlov, A. Pühler, W. H. Schwarz, et al., “Draft genome sequence of the cellulolytic Clostridium thermocellum wild-type strain BC1 playing a role in cellulosic biomass degradation”, Journal of Biotechnology, 2013, 168, 62-63.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2566922
S. Jünemann, F. J. Sedlazeck, K. Prior, A. Albersmeier, U. John, J. Kalinowski, A. Mellmann, A. Goesmann, A. von Haeseler, J. Stoye, et al., “Updating benchtop sequencing performance comparison”, Nature Biotechnology, 2013, 31, 294-296.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2557938
R. A. Mann, T. H. M. Smits, A. Bühlmann, J. Blom, A. Goesmann, J. E. Frey, K. M. Plummer, S. V. Beer, J. Luck, B. Duffy, et al., “Comparative Genomics of 12 Strains of Erwinia amylovora Identifies a Pan-Genome with a Large Conserved Core”, PLOS ONE, 2013, 8, e55644.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2561776
C. Trötschel, S. Albaum, and A. Poetsch, “Proteome turnover in bacteria: current status for Corynebacterium glutamicum and related bacteria”, Microbial biotechnology, 2013, 708-719.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2554079
C. Kuenne, A. Billion, M. A. Mraheil, A. Strittmatter, R. Daniel, A. Goesmann, S. Barbuddhe, T. Hain, and T. Chakraborty, “Reassessment of the Listeria monocytogenes pan-genome reveals dynamic integration hotspots and mobile genetic elements as major components of the accessory genome”, BMC Genomics, 2013, 14, 47.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548286
V. M. Luque-Almagro, F. Acera, M. I. Igeño, D. Wibberg, M. D. Roldán, L. P. Sáez, M. Hennig, A. Quesada, M. J. Huertas, J. Blom, et al., “Draft whole genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344”, Environmental Microbiology, 2013, 15, 253-270.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645668 OA
C. Bogen, A. Al-Dilaimi, A. Albersmeier, J. Wichmann, M. Grundmann, O. Rupp, K. J. Lauersen, O. Blifernez-Klassen, J. Kalinowski, A. Goesmann, et al., “Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production”, BMC Genomics, 2013, 14, 926.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2635520
B. Dam, S. Dam, J. Blom, and W. Liesack, “Genome Analysis Coupled with Physiological Studies Reveals a Diverse Nitrogen Metabolism in Methylocystis sp Strain SC2”, Plos One, 2013, 8, e74767.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2610129
N. Kessler, A. Bonte, G. Langenkämper, K. Niehaus, A. Goesmann, and T. W. Nattkemper, “MeltDB 2.0 - Advances of the metabolomics software system”, Bioinformatics, 2013, 29, 2452-2459.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2607974
B. Niu, J. Vater, C. Rückert, J. Blom, M. Lehmann, J. - J. Ru, X. - H. Chen, Q. Wang, and R. Borriss, “Polymyxin P is the active principle in suppressing phytopathogenic Erwinia spp. by the biocontrol rhizobacterium Paenibacillus polymyxa M-1”, BMC microbiology, 2013, 13, 137.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529309
S. Bolzan de Campos, J. - W. Youn, R. Farina, S. Jaenicke, S. Jünemann, R. Szczepanowski, A. Beneduzi, L. K. Vargas, V. F. Wendisch, and L. Passaglia, “Changes in Root Bacterial Communities Associated to Two Different Development Stages of Canola (*Brassica napus* L. var oleifera) Evaluated through Next-Generation Sequencing”, Microbial Ecology, 2013, 65, 593-601.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529202
M. Zakrzewski, T. Bekel, C. Ander, A. Pühler, O. Rupp, J. Stoye, A. Schlüter, and A. Goesmann, “MetaSAMS - A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets”, Journal of Biotechnology, 2013, 167, 156-165.
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2013 | Konferenzbeitrag | Im Druck | PUB-ID: 2538625
A. Bonte, N. Kessler, T. W. Nattkemper, A. Goesmann, T. Cecile, P. Mäder, K. Niehaus, and G. Langenkämper, In Press.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498160 OA
J. Schröder, I. Maus, K. Meyer, S. Wördemann, J. Blom, S. Jaenicke, J. Schneider, E. Trost, and A. Tauch, “Complete genome sequence, lifestyle, and multi-drug resistance of the human pathogen Corynebacterium resistens DSM 45100 isolated from blood samples of a leukemia patient”, BMC Genomics, 2012, 13, : 141.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2484618
M. Zakrzewski, A. Goesmann, S. Jaenicke, S. Jünemann, F. G. Eikmeyer, R. Szczepanowski, W. A. Al-Soud, S. Sørensen, A. Pühler, and A. Schlüter, “Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing”, Journal of Biotechnology, 2012, 158, 248-258.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2513347
E. Trost, J. Blom, S. de Castro Soares, I. - H. Huang, A. Al-Dilaimi, J. Schröder, S. Jaenicke, F. A. Dorella, F. S. Rocha, A. Miyoshi, et al., “Pangenomic Study of Corynebacterium diphtheriae That Provides Insights into the Genomic Diversity of Pathogenic Isolates from Cases of Classical Diphtheria, Endocarditis, and Pneumonia”, Journal of bacteriology, 2012, 194, 3199-3215.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500990
M. T. Rose, T. J. Rose, J. Pariasca-Tanaka, T. Yoshihashi, H. Neuweger, A. Goesmann, M. Frei, and M. Wissuwa, “Root metabolic response of rice (Oryza sativa L.) genotypes with contrasting tolerance to zinc deficiency and bicarbonate excess”, Planta, 2012, 236, 959-973.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490949
A. Zschuttig, K. Zimmermann, J. Blom, A. Goesmann, C. Pohlmann, and F. Gunzer, “Identification and Characterization of Microcin S, a New Antibacterial Peptide Produced by Probiotic Escherichia coli G3/10”, PLoS ONE, 2012, 7, e33351.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2530221
F. Jankowitsch, J. Schwarz, C. Rückert, B. Gust, R. Szczepanowski, J. Blom, S. Pelzer, J. Kalinowski, and M. Mack, “The genome sequence of the bacterium Streptomyces davawensis JCM 4913 and heterologous production of the unique antibiotic roseoflavin”, Journal of bacteriology, 2012, 194, 6818-6827.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2527519
J. M. Ruijter, M. W. Pfaffl, S. Zhao, A. N. Spiess, G. Boggy, J. Blom, R. G. Rutledge, D. Sisti, A. Lievens, K. De Preter, et al., “Evaluation of qPCR curve analysis methods for reliable biomarker discovery: Bias, resolution, precision, and implications”, Methods. A companion to methods in enzymology (San Diego, Calif.), 2012, 59, 32-46.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2471858
L. Ausec, M. Zakrzewski, A. Goesmann, A. Schlüter, and I. Mandic-Mulec, “Correction: bioinformatic analysis reveals high diversity of bacterial genes for laccase-like enzymes”, PLoS ONE, 2012, 7.
PUB | DOI | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2553455
P. De Maayer, W. - Y. Chan, J. Blom, S. N. Venter, B. Duffy, T. H. M. Smits, and T. A. Coutinho, “The large universal Pantoea plasmid LPP-1 plays a major role in biological and ecological diversification”, Bmc Genomics, 2012, 13, 625.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490535
S. Heinl, D. Wibberg, F. G. Eikmeyer, R. Szczepanowski, J. Blom, B. Linke, A. Goesmann, R. Grabherr, H. Schwab, A. Pühler, et al., “Insights into the completely annotated genome of Lactobacillus buchneri CD034, a strain isolated from stable grass silage”, Journal of Biotechnology, 2012, 161, 153-166.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2471681
A. Rademacher, M. Zakrzewski, A. Schlüter, M. Schonberg, R. Szczepanowski, A. Goesmann, A. Pühler, and M. Klocke, “Characterization of microbial biofilms in a thermophilic biogas system by high-throughput metagenome sequencing”, FEMS Microbiology Ecology, 2012, 79, 785-799.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2513256
M. Filippini, W. Qi, J. Blom, A. Goesmann, T. H. M. Smits, and H. C. Bagheri, “Genome Sequence of Fibrella aestuarina BUZ 2T, a Filamentous Marine Bacterium”, Journal of bacteriology, 2012, 194, 3555.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498232
C. Trötschel, S. Albaum, D. Wolff, S. Schröder, A. Goesmann, T. W. Nattkemper, and A. Poetsch, “Protein turnover quantification in a multi-labeling approach - from data calculation to evaluation”, Molecular & Cellular Proteomics, 2012, 11, 512-526.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2487853
K. Brankatschk, J. Blom, A. Goesmann, T. H. M. Smits, and B. Duffy, “Comparative genomic analysis of Salmonella enterica subsp. enterica serovar Weltevreden foodborne strains with other serovars”, International journal of food microbiology, 2012, 155, 247-256.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2486204
J. Blom, C. Rückert, B. Niu, Q. Wang, and R. Borriss, “The Complete Genome of Bacillus amyloliquefaciens subsp. plantarum CAU B946 Contains a Gene Cluster for Nonribosomal Synthesis of Iturin A”, Journal of bacteriology, 2012, 194, 1845-1846.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2478526
M. Hackl, V. Jadhav, T. Jakobi, O. Rupp, K. Brinkrolf, A. Goesmann, A. Pühler, T. Noll, N. Borth, and J. Grillari, “Computational identification of microRNA gene loci and precursor microRNA sequences in CHO cell lines”, Journal of Biotechnology, 2012, 158, 151-155.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2405255
M. Persicke, C. Rückert, J. Plassmeier, L. Stutz, N. Kessler, J. Kalinowski, A. Goesmann, and H. Neuweger, “MSEA: metabolite set enrichment analysis in the MeltDB metabolomics software platform: metabolic profiling of Corynebacterium glutamicum as an example”, Metabolomics, 2012, 8, 310-322.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2510984
R. Hilker, C. Sickinger, C. N. S. Pedersen, and J. Stoye, “UniMoG - A unifying framework for genomic distance calculation and sorting based on DCJ”, Bioinformatics, 2012, 28, 2509-2511.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500959
T. Kahlke, A. Goesmann, E. Hjerde, N. P. Willassen, and P. Haugen, “Unique core genomes of the bacterial family vibrionaceae: Insights into niche adaptation and speciation”, BMC genomics, 2012, 13, 179.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500966
T. Hain, R. Ghai, A. Billion, C. T. Kuenne, C. Steinweg, B. Izar, W. Mohamed, M. Mraheil, E. Domann, S. Schaffrath, et al., “Comparative genomics and transcriptomics of lineages I, II, and III strains of Listeria monocytogenes”, BMC Genomics, 2012, 13, 144.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2544774
J. Schneider, H. Andrea, J. Blom, S. Jaenicke, C. Rückert, C. Schorsch, R. Szczepanowski, M. Farwick, A. Goesmann, A. Pühler, et al., “Draft Genome Sequence of Wickerhamomyces ciferrii NRRL Y-1031 F-60-10”, Eukaryotic Cell, 2012, 11, 1582-1583.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500937
F. Rezzonico, A. Braun-Kiewnick, R. A. Mann, B. Rodoni, A. Goesmann, B. Duffy, and T. H. M. Smits, “Lipopolysaccharide biosynthesis genes discriminate between Rubus- and Spiraeoideae-infective genotypes of Erwinia amylovora”, Molecular plant pathology, 2012, 13, 975-984.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501081
P. De Maayer, W. Y. Chan, F. Rezzonico, A. Bühlmann, S. N. Venter, J. Blom, A. Goesmann, J. E. Frey, T. H. M. Smits, B. Duffy, et al., “Complete genome sequence of clinical isolate Pantoea ananatis LMG 5342”, Journal of Bacteriology, 2012, 194, 1615-1616.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2542210
V. R. Parreira, M. Costa, F. G. Eikmeyer, J. Blom, and J. F. Prescott, “Sequence of Two Plasmids from Clostridium perfringens Chicken Necrotic Enteritis Isolates and Comparison with C. perfringens Conjugative Plasmids”, PLoS ONE, 2012, 7, e49753.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526269 OA
T. Strobel, A. Al-Dilaimi, J. Blom, A. Gessner, J. Kalinowski, M. Luzhetska, A. Pühler, R. Szczepanowski, A. Bechthold, and C. Rückert, “Complete genome sequence of Saccharothrix espanaensis DSM 44229T and comparison to the other completely sequenced Pseudonocardiaceae”, BMC Genomics, 2012, 13, 465.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529610
S. Schork, A. Schlüter, J. Blom, S. Schneiker-Bekel, A. Pühler, A. Goesmann, M. Frosch, and C. Schoen, “Genome Sequence of a Neisseria meningitidis Capsule Null Locus Strain from the Clonal Complex of Sequence Type 198”, Journal of Bacteriology, 2012, 194, 5144-5145.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526281
M. Zischka, C. Kuenne, J. Blom, P. W. Dabrowski, B. Linke, T. Hain, A. Nitsche, A. Goesmann, J. Larsen, L. B. Jensen, et al., “Complete Genome Sequence of the Porcine Isolate Enterococcus faecalis D32”, Journal of Bacteriology, 2012, 194, 5490-5491.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526298
I. Maus, D. Wibberg, R. Stantscheff, F. G. Eikmeyer, A. Seffner, J. Boelter, R. Szczepanowski, J. Blom, S. Jaenicke, H. König, et al., “Complete Genome Sequence of the Hydrogenotrophic, Methanogenic Archaeon Methanoculleus bourgensis Strain MS2T, Isolated from a Sewage Sludge Digester”, Journal of Bacteriology, 2012, 194, 5487-5488.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526933
A. B. Dohrmann, M. Küting, S. Jünemann, S. Jaenicke, A. Schlüter, and C. C. Tebbe, “Importance of rare taxa for bacterial diversity in the rhizosphere of Bt- and conventional maize varieties”, The ISME journal, 2012, 7, 37-49.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2517230
S. Jünemann, K. Prior, R. Szczepanowski, I. Harks, B. Ehmke, A. Goesmann, J. Stoye, and D. Harmsen, “Bacterial Community Shift in Treated Periodontitis Patients Revealed by Ion Torrent 16S rRNA Gene Amplicon Sequencing”, PLoS ONE, 2012, 7, e41606.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500946
R. A. Mann, J. Blom, A. Bühlmann, K. M. Plummer, S. V. Beer, J. E. Luck, A. Goesmann, J. E. Frey, B. C. Rodoni, B. Duffy, et al., “Comparative analysis of the Hrp pathogenicity island of Rubus- and Spiraeoideae-infecting Erwinia amylovora strains identifies the IT region as a remnant of an integrative conjugative element”, Gene, 2012, 504, 6-12.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490286
U. Vogel, R. Szczepanowski, H. Claus, S. Jünemann, K. Prior, and D. Harmsen, “Ion Torrent PGM sequencing for genomic typing of Neisseria meningitidis for rapid determination of multiple layers of typing information”, Journal of clinical microbiology, 2012, 50, 1889-1894.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300063 OA
S. Albaum, H. Hahne, A. Otto, U. Haußmann, D. Becher, A. Poetsch, A. Goesmann, and T. W. Nattkemper, “A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application study”, Proteome Science, 2011, 9, 30.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2451800 OA
J. Toepel, S. Albaum, S. Arvidsson, A. Goesmann, M. La Russa, K. Rogge, and O. Kruse, “Construction and evaluation of a whole genome microarray of Chlamydomonas reinhardtii”, BMC Genomics, 2011, 12, 579-589.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375634
J. F. Pothier, F. - J. Vorhölter, J. Blom, A. Goesmann, A. Pühler, T. H. Smits, and B. Duffy, “The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis”, FEMS Microbiology Letters, 2011, 323, 52-60.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2404767
B. Niu, C. Rückert, J. Blom, Q. Wang, and R. Borriss, “The Genome of the Plant Growth-Promoting Rhizobacterium Paenibacillus polymyxa M-1 Contains Nine Sites Dedicated to Nonribosomal Synthesis of Lipopeptides and Polyketides.”, Journal of Bacteriology, 2011, 193, 5862-5863.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354731
D. Wibberg, J. Blom, S. Jaenicke, F. Kollin, O. Rupp, B. Scharf, S. Schneiker-Bekel, R. Szczepanowski, A. Goesmann, J. C. Setubal, et al., “Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid”, Journal of Biotechnology, 2011, 155, 50-62.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2317371
A. Küberl, J. Schneider, G. G. Thallinger, I. Anderl, D. Wibberg, T. Hajek, S. Jaenicke, K. Brinkrolf, A. Goesmann, R. Szczepanowski, et al., “High-quality genome sequence of Pichia pastoris CBS7435”, Journal of Biotechnology, 2011, 154, 312-320.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326511
C. Rückert, J. Blom, X. H. Chen, O. Reva, and R. Borriss, “Genome sequence of B. amyloliquefaciens type strain DSM7(T) reveals differences to plant-associated B. amyloliquefaciens FZB42”, Journal of Biotechnology, 2011, 155, 78-85.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2394493
D. Hinse, T. Vollmer, C. Rückert, J. Blom, J. Kalinowski, C. Knabbe, and J. Dreier, “Complete genome and comparative analysis of Streptococcus gallolyticus subsp gallolyticus, an emerging pathogen of infective endocarditis”, BMC Genomics, 2011, 12, 400.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2396576
J. Becker, M. Hackel, T. Jakobi, O. Rupp, J. Schneider, R. Szczepanowski, T. Bekel, N. Borth, A. Goesmann, J. Grillari, et al., “Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing”, Journal of Biotechnology, 2011, 156, 227-235.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289576
V. Thomas, C. Bertelli, F. Collyn, N. Casson, A. Telenti, A. Goesmann, A. Croxatto, and G. Greub, “Lausannevirus, a giant amoebal virus encoding histone doublets”, Environmental Microbiology, 2011, 13, 1454-1466.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375954
R. Borriss, X. - H. Chen, C. Rückert, J. Blom, A. Becker, B. Baumgarth, B. Fan, R. Pukall, P. Schumann, C. Sproer, et al., “Relationship of Bacillus amyloliquefaciens clades associated with strains DSM 7T and FZB42T: a proposal for Bacillus amyloliquefaciens subsp. amyloliquefaciens subsp. nov. and Bacillus amyloliquefaciens subsp. plantarum subsp. nov. based on complete genome sequence comparisons”, Int J Syst Evol Microbiol, 2011, 61, 1786-1801.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2472468
P. Llop, J. Cabrefiga, T. H. M. Smits, T. Dreo, S. Barbé, J. Pulawska, A. Bultreys, J. Blom, B. Duffy, E. Montesinos, et al., “Erwinia amylovora novel plasmid pEI70: Complete sequence, biogeography, and role in aggressiveness in the fire blight phytopathogen”, PLoS one, 2011, 6, e28651.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2411830
L. Ausec, M. Zakrzewski, A. Goesmann, A. Schlüter, and I. Mandic-Mulec, “Bioinformatic analysis reveals high diversity of bacterial genes for laccase-like enzymes”, PLoS ONE, 2011, 6, : e25724.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326445
J. Schneider, J. Blom, S. Jaenicke, B. Linke, K. Brinkrolf, H. Neuweger, A. Tauch, and A. Goesmann, “RAPYD - Rapid Annotation Platform for Yeast Data”, Journal of Biotechnology, 2011, 155, 118-126.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2307104
T. H. M. Smits, F. Rezzonico, T. Kamber, J. Blom, A. Goesmann, C. A. Ishimaru, J. E. Frey, V. O. Stockwell, and B. Duffy, “Metabolic Versatility and Antibacterial Metabolite Biosynthesis Are Distinguishing Genomic Features of the Fire Blight Antagonist Pantoea vagans C9-1”, PLoS ONE, 2011, 6, e22247.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2447730
J. M. Gonzalez, J. Pinhassi, B. Fernández-Gómez, M. Coll-Llado, M. Gonzalez-Velazquez, P. Puigbo, S. Jaenicke, L. Gomez-Consarnau, A. Fernandez-Guerra, A. Goesmann, et al., “Genomics of the proteorhodopsin-containing marine flavobacterium Dokdonia sp. MED134”, Applied and Environmental Microbiology, 2011, 77, 8676-8686.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2448409
F. Imperi, L. Antunes, J. Blom, L. Villa, M. Iacono, P. Visca, and A. Carattoli, “The genomics of Acinetobacter baumannii: Insights into genome plasticity, antimicrobial resistance and pathogenicity”, IUBMB life, 2011, 63, 1068-1074.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326455
E. Krol, J. Blom, J. Winnebald, A. Berhoerster, M. J. Barnett, A. Goesmann, J. Baumbach, and A. Becker, “RhizoRegNet-A database of rhizobial transcription factors and regulatory networks”, Journal of Biotechnology, 2011, 155, 127-134.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326518
R. Szczepanowski, F. G. Eikmeyer, J. Harfmann, J. Blom, L. M. Rogers, E. M. Top, and A. Schlüter, “Sequencing and comparative analysis of IncP-1 alpha antibiotic resistance plasmids reveal a highly conserved backbone and differences within accessory regions”, Journal of Biotechnology, 2011, 155, 95-103.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2453768
J. Becker, C. Timmermann, T. Jakobi, O. Rupp, R. Szczepanowski, M. Hackl, A. Goesmann, A. Tauch, N. Borth, J. Grillari, et al., “Next-generation sequencing of the CHO cell transcriptome”, BMC Proceedings, 2011, 5, P6.
PUB | DOI
 
2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2397780
D. Doppmeier, R. Stracke, P. Lutter, A. Goesmann, K. Niehaus, and B. Weisshaar, 2011, p. 218.
PUB
 
2011 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2382565
R. Borriss, C. Rückert, J. Blom, O. Bezuidt, O. Reva, and H. P. Klenk, in Taxonomy of Prokaryotes (Methods in Microbiology) (Eds.: F. Rainey, A. Oren), Academic Press,, Waltham, MA, USA, 2011.
PUB | DOI | WoS
 
2011 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2447751
S. Jaenicke, M. Zakrzewski, S. Jünemann, A. Pühler, A. Goesmann, and A. Schlüter, in Handbook of Molecular Microbial Ecology II: Metagenomics in Different Habitats (Ed.: F.J. de Bruijn), Wiley-Blackwell, 2011, p. 403-414.
PUB | DOI
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2290032
B. Joseph, R. F. Schwarz, B. Linke, J. Blom, A. Becker, H. Claus, A. Goesmann, M. Frosch, T. Mueller, U. Vogel, et al., “Virulence Evolution of the Human Pathogen Neisseria meningitidis by Recombination in the Core and Accessory Genome”, PLoS ONE, 2011, 6, e18441.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093389
C. Schoen, J. Weber-Lehmann, J. Blom, B. Joseph, A. Goesmann, A. Strittmatter, and M. Frosch, “Whole-Genome Sequence of the Transformable Neisseria meningitidis Serogroup A Strain WUE2594”, Journal of Bacteriology, 2011, 193, 2064-2065.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2289887
D. Hinse, T. Vollmer, C. Rückert, J. Blom, J. Kalinowski, C. Knabbe, and J. Dreier, “Complete Genome Analysis of Streptococcus gallolyticus subsp gallolyticus, an Emerging Pathogen of Infective Endocarditis”, Clinical Chemistry and Laboratory Medicine, 2011, 49, S837.
PUB | WoS
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289902
T. B. De Gregoris, O. Rupp, S. Klages, F. Knaust, T. Bekel, M. Kube, J. G. Burgess, M. I. Arnone, A. Goesmann, R. Reinhardt, et al., “Deep sequencing of naupliar-, cyprid- and adult-specific normalised Expressed Sequence Tag (EST) libraries of the acorn barnacle Balanus amphitrite”, Biofouling, 2011, 27, 367-374.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289952
J. Blom, T. Jakobi, D. Doppmeier, S. Jaenicke, J. Kalinowski, J. Stoye, and A. Goesmann, “Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming”, Bioinformatics, 2011, 27, 1351-1358.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289928
R. Kant, J. Blom, A. Palva, R. J. Siezen, and W. M. de Vos, “Comparative genomics of Lactobacillus”, Microbial Biotechnology, 2011, 4, 323-332.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Im Druck | PUB-ID: 2017892
S. Schneiker-Bekel, D. Wibberg, T. Bekel, J. Blom, B. Linke, H. Neuweger, M. Stiens, F. - J. Vorhölter, S. Weidner, A. Goesmann, et al., “The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome”, Journal of Biotechnology, In Press, 155, 20-33.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003276
S. Jaenicke, C. Ander, T. Bekel, R. Bisdorf, M. Dröge, K. - H. Gartemann, S. Jünemann, O. Kaiser, L. Krause, F. Tille, et al., “Comparative and Joint Analysis of Two Metagenomic Datasets from a Biogas Fermenter Obtained by 454-Pyrosequencing”, PLoS ONE, 2011, 6, e14519.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2087955
M. Hackl, T. Jakobi, J. Blom, D. Doppmeier, K. Brinkrolf, R. Szczepanowski, S. H. Bernhart, C. Höner zu Siederdissen, J. A. H. Bort, M. Wieser, et al., “Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering”, Journal of Biotechnology, 2011, 153, 62-75.
PUB | DOI | WoS | PubMed | Europe PMC
 

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