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154 Publikationen

2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526269
Strobel, Tina, Al-Dilaimi, Arwa, Blom, Jochen, Gessner, Arne, Kalinowski, Jörn, Luzhetska, Marta, Pühler, Alfred, Szczepanowski, Rafael, Bechthold, Andreas, and Rückert, Christian. 2012. “Complete genome sequence of Saccharothrix espanaensis DSM 44229T and comparison to the other completely sequenced Pseudonocardiaceae”. BMC Genomics 13 (1): 465.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529610
Schork, Sabine, Schlüter, Andreas, Blom, Jochen, Schneiker-Bekel, Susanne, Pühler, Alfred, Goesmann, Alexander, Frosch, Matthias, and Schoen, Christoph. 2012. “Genome Sequence of a Neisseria meningitidis Capsule Null Locus Strain from the Clonal Complex of Sequence Type 198”. Journal of Bacteriology 194 (18): 5144-5145.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526281
Zischka, M., Kuenne, C., Blom, Jochen, Dabrowski, P. W., Linke, Burkhard, Hain, T., Nitsche, A., et al. 2012. “Complete Genome Sequence of the Porcine Isolate Enterococcus faecalis D32”. Journal of Bacteriology 194 (19): 5490-5491.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526298
Maus, Irena, Wibberg, Daniel, Stantscheff, R., Eikmeyer, Felix Gregor, Seffner, A., Boelter, J., Szczepanowski, Rafael, et al. 2012. “Complete Genome Sequence of the Hydrogenotrophic, Methanogenic Archaeon Methanoculleus bourgensis Strain MS2T, Isolated from a Sewage Sludge Digester”. Journal of Bacteriology 194 (19): 5487-5488.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526933
Dohrmann, Anja B, Küting, Meike, Jünemann, Sebastian, Jaenicke, Sebastian, Schlüter, Andreas, and Tebbe, Christoph C. 2012. “Importance of rare taxa for bacterial diversity in the rhizosphere of Bt- and conventional maize varieties”. The ISME journal 7 (1): 37-49.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2517230
Jünemann, Sebastian, Prior, Karola, Szczepanowski, Rafael, Harks, Inga, Ehmke, Benjamin, Goesmann, Alexander, Stoye, Jens, and Harmsen, Dag. 2012. “Bacterial Community Shift in Treated Periodontitis Patients Revealed by Ion Torrent 16S rRNA Gene Amplicon Sequencing”. PLoS ONE 7 (8): e41606.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500946
Mann, Rachel A, Blom, Jochen, Bühlmann, Andreas, Plummer, Kim M, Beer, Steven V, Luck, Joanne E, Goesmann, Alexander, et al. 2012. “Comparative analysis of the Hrp pathogenicity island of Rubus- and Spiraeoideae-infecting Erwinia amylovora strains identifies the IT region as a remnant of an integrative conjugative element”. Gene 504 (1): 6-12.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490286
Vogel, Ulrich, Szczepanowski, Rafael, Claus, Heike, Jünemann, Sebastian, Prior, Karola, and Harmsen, Dag. 2012. “Ion Torrent PGM sequencing for genomic typing of Neisseria meningitidis for rapid determination of multiple layers of typing information”. Journal of clinical microbiology 50 (6): 1889-1894.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300063
Albaum, Stefan, Hahne, H., Otto, A., Haußmann, U., Becher, D., Poetsch, A., Goesmann, Alexander, and Nattkemper, Tim Wilhelm. 2011. “A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application study”. Proteome Science 9 (1): 30.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2451800
Toepel, Jörg, Albaum, Stefan, Arvidsson, S., Goesmann, Alexander, La Russa, Marco, Rogge, Kristin, and Kruse, Olaf. 2011. “Construction and evaluation of a whole genome microarray of Chlamydomonas reinhardtii”. BMC Genomics 12 (1): 579-589.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375634
Pothier, Joël F., Vorhölter, Frank-Jörg, Blom, Jochen, Goesmann, Alexander, Pühler, Alfred, Smits, TH, and Duffy, B. 2011. “The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis”. FEMS Microbiology Letters 323 (1): 52-60.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2404767
Niu, Ben, Rückert, Christian, Blom, Jochen, Wang, Qi, and Borriss, Rainer. 2011. “The Genome of the Plant Growth-Promoting Rhizobacterium Paenibacillus polymyxa M-1 Contains Nine Sites Dedicated to Nonribosomal Synthesis of Lipopeptides and Polyketides.”. Journal of Bacteriology 193 (20): 5862-5863.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354731
Wibberg, Daniel, Blom, Jochen, Jaenicke, Sebastian, Kollin, Florian, Rupp, Oliver, Scharf, Birgit, Schneiker-Bekel, Susanne, et al. 2011. “Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid”. Journal of Biotechnology 155 (1): 50-62.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2317371
Küberl, Andreas, Schneider, Jessica, Thallinger, Gerhard G., Anderl, Ingund, Wibberg, Daniel, Hajek, Tanja, Jaenicke, Sebastian, et al. 2011. “High-quality genome sequence of Pichia pastoris CBS7435”. Journal of Biotechnology 154 (4): 312-320.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326511
Rückert, Christian, Blom, Jochen, Chen, XiaoHua, Reva, Oleg, and Borriss, Rainer. 2011. “Genome sequence of B. amyloliquefaciens type strain DSM7(T) reveals differences to plant-associated B. amyloliquefaciens FZB42”. Journal of Biotechnology 155 (1): 78-85.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2394493
Hinse, Dennis, Vollmer, Tanja, Rückert, Christian, Blom, Jochen, Kalinowski, Jörn, Knabbe, Cornelius, and Dreier, Jens. 2011. “Complete genome and comparative analysis of Streptococcus gallolyticus subsp gallolyticus, an emerging pathogen of infective endocarditis”. BMC Genomics 12 (1): 400.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2396576
Becker, Jennifer, Hackel, M, Jakobi, Tobias, Rupp, Oliver, Schneider, Jessica, Szczepanowski, Rafael, Bekel, Thomas, et al. 2011. “Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing”. Journal of Biotechnology 156 (3): 227-235.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289576
Thomas, Vincent, Bertelli, Claire, Collyn, Francois, Casson, Nicola, Telenti, Amalio, Goesmann, Alexander, Croxatto, Antony, and Greub, Gilbert. 2011. “Lausannevirus, a giant amoebal virus encoding histone doublets”. Environmental Microbiology 13 (6): 1454-1466.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375954
Borriss, Rainer, Chen, Xiao-Hua, Rückert, Christian, Blom, Jochen, Becker, Anke, Baumgarth, Birgit, Fan, Ben, et al. 2011. “Relationship of Bacillus amyloliquefaciens clades associated with strains DSM 7T and FZB42T: a proposal for Bacillus amyloliquefaciens subsp. amyloliquefaciens subsp. nov. and Bacillus amyloliquefaciens subsp. plantarum subsp. nov. based on complete genome sequence comparisons”. Int J Syst Evol Microbiol 61 (8): 1786-1801.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2472468
Llop, P., Cabrefiga, J., Smits, T.H.M., Dreo, T., Barbé, S., Pulawska, J., Bultreys, A., et al. 2011. “Erwinia amylovora novel plasmid pEI70: Complete sequence, biogeography, and role in aggressiveness in the fire blight phytopathogen”. PLoS one 6 (12): e28651.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2411830
Ausec, Luka, Zakrzewski, Martha, Goesmann, Alexander, Schlüter, Andreas, and Mandic-Mulec, Ines. 2011. “Bioinformatic analysis reveals high diversity of bacterial genes for laccase-like enzymes”. PLoS ONE 6 (10): e25724.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326445
Schneider, Jessica, Blom, Jochen, Jaenicke, Sebastian, Linke, Burkhard, Brinkrolf, Karina, Neuweger, Heiko, Tauch, Andreas, and Goesmann, Alexander. 2011. “RAPYD - Rapid Annotation Platform for Yeast Data”. Journal of Biotechnology 155 (1): 118-126.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2307104
Smits, Theo H. M., Rezzonico, Fabio, Kamber, Tim, Blom, Jochen, Goesmann, Alexander, Ishimaru, Carol A., Frey, Juerg E., Stockwell, Virginia O., and Duffy, Brion. 2011. “Metabolic Versatility and Antibacterial Metabolite Biosynthesis Are Distinguishing Genomic Features of the Fire Blight Antagonist Pantoea vagans C9-1”. PLoS ONE 6 (7): e22247.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2447730
Gonzalez, Jose M., Pinhassi, Jarone, Fernández-Gómez, Beatriz, Coll-Llado, Montserrat, Gonzalez-Velazquez, Monica, Puigbo, Pere, Jaenicke, Sebastian, et al. 2011. “Genomics of the proteorhodopsin-containing marine flavobacterium Dokdonia sp. MED134”. Applied and Environmental Microbiology 77 (24): 8676-8686.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2448409
Imperi, F., Antunes, L., Blom, J., Villa, L., Iacono, M., Visca, P., and Carattoli, A. 2011. “The genomics of Acinetobacter baumannii: Insights into genome plasticity, antimicrobial resistance and pathogenicity”. IUBMB life 63 (12): 1068-1074.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326455
Krol, Elizaveta, Blom, Jochen, Winnebald, Jörn, Berhoerster, Alexander, Barnett, Melanie J., Goesmann, Alexander, Baumbach, Jan, and Becker, Anke. 2011. “RhizoRegNet-A database of rhizobial transcription factors and regulatory networks”. Journal of Biotechnology 155 (1): 127-134.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326518
Szczepanowski, Rafael, Eikmeyer, Felix Gregor, Harfmann, Jannis, Blom, Jochen, Rogers, Linda M., Top, Eva M., and Schlüter, Andreas. 2011. “Sequencing and comparative analysis of IncP-1 alpha antibiotic resistance plasmids reveal a highly conserved backbone and differences within accessory regions”. Journal of Biotechnology 155 (1): 95-103.
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2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2453768
Becker, Jennifer, Timmermann, Christina, Jakobi, Tobias, Rupp, Oliver, Szczepanowski, Rafael, Hackl, Matthias, Goesmann, Alexander, et al. 2011. “Next-generation sequencing of the CHO cell transcriptome”, BMC Proceedings, 5 (Suppl. 8): P6.
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2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2397780
Doppmeier, Daniel, Stracke, Ralf, Lutter, Petra, Goesmann, Alexander, Niehaus, Karsten, and Weisshaar, Bernd. 2011. “Using the GUS Reporter Gene for Quantitative Studies of Promotor Activity in A.thaliana Seedlings”. Presented at the ICSB 2011 Heidelberg/Mannheim, Heidelberg/Mannheim, Germany , 218.
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2011 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2382565
Borriss, R., Rückert, Christian, Blom, Jochen, Bezuidt, O., Reva, O., and Klenk, H.P. 2011. “Whole Genome Sequence Comparisons in Taxonomy”. In Taxonomy of Prokaryotes (Methods in Microbiology), ed. F. Rainey and A. Oren. Waltham, MA, USA: Academic Press,.
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2011 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2447751
Jaenicke, Sebastian, Zakrzewski, Martha, Jünemann, Sebastian, Pühler, Alfred, Goesmann, Alexander, and Schlüter, Andreas. 2011. “Analysis of the Metagenome from a Biogas-Producing Microbial Community by Means of Bioinformatics Methods”. In Handbook of Molecular Microbial Ecology II: Metagenomics in Different Habitats, ed. Frans J. de Bruijn, 403-414. Wiley-Blackwell.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2290032
Joseph, Biju, Schwarz, Roland F., Linke, Burkhard, Blom, Jochen, Becker, Anke, Claus, Heike, Goesmann, Alexander, et al. 2011. “Virulence Evolution of the Human Pathogen Neisseria meningitidis by Recombination in the Core and Accessory Genome”. PLoS ONE 6 (4): e18441.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093389
Schoen, Christoph, Weber-Lehmann, Jacqueline, Blom, Jochen, Joseph, Biju, Goesmann, Alexander, Strittmatter, Axel, and Frosch, Matthias. 2011. “Whole-Genome Sequence of the Transformable Neisseria meningitidis Serogroup A Strain WUE2594”. Journal of Bacteriology 193 (8): 2064-2065.
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2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2289887
Hinse, D., Vollmer, T., Rückert, Christian, Blom, Jochen, Kalinowski, Jörn, Knabbe, Cornelius, and Dreier, Jens. 2011. “Complete Genome Analysis of Streptococcus gallolyticus subsp gallolyticus, an Emerging Pathogen of Infective Endocarditis”, Clinical Chemistry and Laboratory Medicine, 49: S837.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289902
De Gregoris, Tristano Bacchetti, Rupp, Oliver, Klages, Sven, Knaust, Florian, Bekel, Thomas, Kube, Michael, Burgess, J. Grant, et al. 2011. “Deep sequencing of naupliar-, cyprid- and adult-specific normalised Expressed Sequence Tag (EST) libraries of the acorn barnacle Balanus amphitrite”. Biofouling 27 (4): 367-374.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289952
Blom, Jochen, Jakobi, Tobias, Doppmeier, Daniel, Jaenicke, Sebastian, Kalinowski, Jörn, Stoye, Jens, and Goesmann, Alexander. 2011. “Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming”. Bioinformatics 27 (10): 1351-1358.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289928
Kant, Ravi, Blom, Jochen, Palva, Airi, Siezen, Roland J., and de Vos, Willem M. 2011. “Comparative genomics of Lactobacillus”. Microbial Biotechnology 4 (3): 323-332.
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2011 | Zeitschriftenaufsatz | Im Druck | PUB-ID: 2017892
Schneiker-Bekel, Susanne, Wibberg, Daniel, Bekel, Thomas, Blom, Jochen, Linke, Burkhard, Neuweger, Heiko, Stiens, Michael, et al. In Press. “The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome”. Journal of Biotechnology 155 (1): 20-33.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003276
Jaenicke, Sebastian, Ander, Christina, Bekel, Thomas, Bisdorf, Regina, Dröge, Marcus, Gartemann, Karl-Heinz, Jünemann, Sebastian, et al. 2011. “Comparative and Joint Analysis of Two Metagenomic Datasets from a Biogas Fermenter Obtained by 454-Pyrosequencing”. PLoS ONE 6 (1): e14519.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2036058
Margaret, Isabel, Becker, Anke, Blom, Jochen, Bonilla, Ildefonso, Goesmann, Alexander, Göttfert, Michael, Lloret, Javier, et al. 2011. “Symbiotic properties and first analyses of the genomic sequence of the fast growing model strain Sinorhizobium fredii HH103 nodulating soybean”. Journal of Biotechnology 155 (1): 11-19.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2087955
Hackl, Matthias, Jakobi, Tobias, Blom, Jochen, Doppmeier, Daniel, Brinkrolf, Karina, Szczepanowski, Rafael, Bernhart, Stephan H, et al. 2011. “Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering”. Journal of Biotechnology 153 (1-2): 62-75.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003418
Powney, Rachel, Smits, Theo H. M., Sawbridge, Tim, Frey, Beatrice, Blom, Jochen, Frey, Juerg E., Plummer, Kim M., et al. 2011. “Genome Sequence of an Erwinia amylovora Strain with Pathogenicity Restricted to Rubus Plants”. Journal of Bacteriology 193 (3): 785-786.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093578
Linke, Burkhard, Giegerich, Robert, and Goesmann, Alexander. 2011. “Conveyor: a workflow engine for bioinformatic analyses”. Bioinformatics 27 (7): 903-911.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093398
Brankatschk, Kerstin, Blom, Jochen, Goesmann, Alexander, Smits, Theo H. M., and Duffy, Brion. 2011. “Genome of a European Fresh-Vegetable Food Safety Outbreak Strain of Salmonella enterica subsp enterica Serovar Weltevreden”. Journal of Bacteriology 193 (8): 2066.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929692
Schneider, Jessica, Vorhölter, Frank-Jörg, Trost, Eva, Blom, Jochen, Musa, Y. R., Neuweger, Heiko, Niehaus, Karsten, Schatschneider, Sarah, Tauch, Andreas, and Goesmann, Alexander. 2010. “CARMEN - Comparative Analysis and in silico Reconstruction of organism-specific MEtabolic Networks”. Genetics and Molecular Research 9 (3): 1660-1672.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1966439
Trost, Eva, Ott, Lisa, Schneider, Jessica, Schröder, Jasmin, Jaenicke, Sebastian, Goesmann, Alexander, Husemann, Peter, et al. 2010. “The complete genome sequence of Corynebacterium pseudotuberculosis FRC41 isolated from a 12-year-old girl with necrotizing lymphadenitis reveals insights into gene-regulatory networks contributing to virulence”. BMC Genomics 11 (1): 728.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1795508
Bertelli, Claire, Collyn, Francois, Croxatto, Antony, Rückert, Christian, Polkinghorne, Adam, Kebbi-Beghdadi, Carole, Goesmann, Alexander, Vaughan, Lloyd, and Greub, Gilbert. 2010. “The Waddlia Genome: A Window into Chlamydial Biology”. PLOS ONE 5 (5): e10890.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1795628
Smits, Theo H. M., Rezzonico, Fabio, Pelludat, Cosima, Goesmann, Alexander, Frey, Juerg E., and Duffy, Brion. 2010. “Genomic and phenotypic characterization of a nonpigmented variant of Pantoea vagans biocontrol strain C9-1 lacking the 530-kb megaplasmid pPag3”. FEMS MICROBIOLOGY LETTERS 308 (1): 48-54.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785275
Trost, Eva, Götker, Susanne, Schneider, Jessica, Schneiker-Bekel, Susanne, Szczepanowski, Rafael, Tilker, Alexandra, Viehöver, Prisca, et al. 2010. “Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortion”. BMC Genomics 11 (1): 91.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785504
Yang, Ines, John, Uwe, Beszteri, Sára, Glöckner, Gernot, Krock, Bernd, Goesmann, Alexander, and Cembella, Allan D. 2010. “Comparative gene expression in toxic versus non-toxic strains of the marine dinoflagellate Alexandrium minutum”. BMC Genomics 11 (1): 248.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1796445
Smits, Theo H. M., Rezzonico, Fabio, Kamber, Tim, Blom, Jochen, Goesmann, Alexander, Frey, Juerg E., and Duffy, Brion. 2010. “Complete Genome Sequence of the Fire Blight Pathogen Erwinia amylovora CFBP 1430 and Comparison to Other Erwinia spp.”. MOLECULAR PLANT-MICROBE INTERACTIONS 23 (4): 384-393.
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2010 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 1894907
Mittard-Runte, Virginie, Bekel, Thomas, Blom, Jochen, Dondrup, Michael, Henckel, Kolja, Jaenicke, Sebastian, Krause, Lutz, et al. 2010. “Practical Guide: Genomic Techniques and How to Apply Them to Marine Questions”. In Introduction to Marine Genomics (Advances in Marine Genomics), ed. J. Mark Cock, Kristin Tessmar-Raible, Catherine Boyen, and Frédérique Viard, 1:315-396. Netherlands: Springer Netherlands.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1796644
Smits, Theo H. M., Jaenicke, Sebastian, Rezzonico, Fabio, Kamber, Tim, Goesmann, Alexander, Frey, Jürg E, and Duffy, Brion. 2010. “Complete genome sequence of the fire blight pathogen Erwinia pyrifoliae DSM 12163(T) and comparative genomic insights into plant pathogenicity”. BMC Genomics 11 (1): 2.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785579
Farnbacher, Max, Jahns, Thomas, Willrodt, Dirk, Daniel, Rolf, Haas, Rainer, Goesmann, Alexander, Kurtz, Stefan, and Rieder, Gabriele. 2010. “Sequencing, annotation, and comparative genome analysis of the gerbil-adapted Helicobacter pylori strain B8”. BMC Genomics 11 (1): 335.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588692
Steinweg, Christiane, Kuenne, Carsten T., Billion, Andre, Mraheil, Mobarak A., Domann, Eugen, Ghai, Rohit, Barbuddhe, Sukhadeo B., et al. 2010. “Complete Genome Sequence of Listeria seeligeri, a Nonpathogenic Member of the Genus Listeria”. Journal of Bacteriology 192 (5): 1473-1474.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1794039
Kuenne, Carsten, Voget, Sonja, Pischimarov, Jordan, Oehm, Sebastian, Goesmann, Alexander, Daniel, Rolf, Hain, Torsten, and Chakraborty, Trinad. 2010. “Comparative Analysis of Plasmids in the Genus Listeria”. PLOS ONE 5 (9): e12511.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1894319
Henckel, Kolja, Küster, Helge, Stutz, Leonhard, and Goesmann, Alexander. 2010. “MediPlEx - a tool to combine in silico and experimental gene expression profiles of the model legume Medicago truncatula.”. BMC Research Notes 3 (1): 262.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1968262
Smits, Theo H. M., Rezzonico, Fabio, Kamber, Tim, Goesmann, Alexander, Ishimaru, Carol A., Stockwell, Virginia O., Frey, Juerg E., and Duffy, Brion. 2010. “Genome Sequence of the Biocontrol Agent Pantoea vagans Strain C9-1”. Journal of Bacteriology 192 (24): 6486-6487.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1990186
Gehlenborg, Nils, O'Donoghue, Sean I, Baliga, Nitin S, Goesmann, Alexander, Hibbs, Matthew A, Kitano, Hiroaki, Kohlbacher, Oliver, et al. 2010. “Visualization of omics data for systems biology”. Nat Methods 7 (3s): S56-S68.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1930110
Joseph, Biju, Schneiker-Bekel, Susanne, Schramm-Glueck, Anja, Blom, Jochen, Claus, Heike, Linke, Burkhard, Schwarz, Roland F., et al. 2010. “Comparative Genome Biology of a Serogroup B Carriage and Disease Strain Supports a Polygenic Nature of Meningococcal Virulence”. JOURNAL OF BACTERIOLOGY 192 (20): 5363-5377.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2397394
Goesmann, Alexander, Schneider, Jessica, Trost, Eva, and Tauch, Andreas. 2009. “Entschlüsselung mikrobieller Genomsequenzen im Schnellverfahren”. BIOspektrum 15 (3): 279-281.
PUB
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783022
Krawczyk, Justina, Goesmann, Alexander, Nolte, Ralf, Werber, Martin, and Weisshaar, Bernd. 2009. “Trace2PS and FSA2PS: two software toolkits for converting trace and fsa files to PostScript format”. Source Code for Biology and Medicine 4 (1): 4.
PUB | PDF | DOI | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783813
Neuweger, Heiko, Persicke, Marcus, Albaum, Stefan, Bekel, Thomas, Dondrup, Michael, Hüser, Andrea T., Winnebald, Jörn, Schneider, Jessica, Kalinowski, Jörn, and Goesmann, Alexander. 2009. “Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example”. BMC Systems Biology 3 (1): 82.
PUB | PDF | DOI | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783187
Blom, Jochen, Albaum, Stefan, Doppmeier, Daniel, Pühler, Alfred, Vorhölter, Frank-Jörg, Zakrzewski, Martha, and Goesmann, Alexander. 2009. “EDGAR: a software framework for the comparative analysis of prokaryotic genomes”. BMC Bioinformatics 10 (1): 154.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635300
Henckel, Kolja, Runte, Kai J., Bekel, Thomas, Dondrup, Michael, Jakobi, Tobias, Küster, Helge, and Goesmann, Alexander. 2009. “TRUNCATULIX - a data warehouse for the legume community”. BMC Plant Biology 9 (1): 19.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634097
Strittmatter, Axel W., Liesegang, Heiko, Rabus, Ralf, Decker, Iwona, Amann, Judith, Andres, Soenke, Henne, Anke, et al. 2009. “Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide”. ENVIRONMENTAL MICROBIOLOGY 11 (5): 1038-1055.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634467
Becker, Anke, Barnett, Melanie J., Capela, Delphine, Dondrup, Michael, Kamp, Paul-Bertram, Krol, Elizaveta, Linke, Burkhard, et al. 2009. “A portal for rhizobial genomes: RhizoGATE integrates a Sinorhizobium meliloti genome annotation update with postgenome data”. JOURNAL OF BIOTECHNOLOGY 140 (1-2): 45-50.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635314
Diaz, Naryttza N., Krause, Lutz, Goesmann, Alexander, Niehaus, Karsten, and Nattkemper, Tim Wilhelm. 2009. “TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach”. BMC Bioinformatics 10 (1): 56.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635321
Dondrup, Michael, Albaum, Stefan, Griebel, Thasso, Henckel, Kolja, Jünemann, Sebastian, Kahlke, Tim, Kleindt, Christiane Katja, et al. 2009. “EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data”. BMC Bioinformatics 10 (1): 50.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589098
Gerlach, Wolfgang, Jünemann, Sebastian, Tille, Felix, Goesmann, Alexander, and Stoye, Jens. 2009. “WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads”. BMC Bioinformatics 10 (1): 430.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531
Albaum, Stefan, Neuweger, Heiko, Fraenzel, Benjamin, Lange, Sita, Mertens, Dominik, Troetschel, Christian, Wolters, Dirk, Kalinowski, Jörn, Nattkemper, Tim Wilhelm, and Goesmann, Alexander. 2009. “Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments”. Bioinformatics 25 (23): 3128-3134.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589936
Wegmann, Udo, Overweg, Karin, Horn, Nikki, Goesmann, Alexander, Narbad, Arjan, Gasson, Michael J., and Shearman, Claire. 2009. “Complete Genome Sequence of Lactobacillus johnsonii FI9785, a Competitive Exclusion Agent against Pathogens in Poultry”. JOURNAL OF BACTERIOLOGY 191 (22): 7142-7143.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634447
Bekel, Thomas, Henckel, Kolja, Küster, Helge, Meyer, Folker, Mittard-Runte, Virginie, Neuweger, Heiko, Paarmann, Daniel, et al. 2009. “The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies”. Journal of Biotechnology 140 (1-2): 3-12.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634461
Dondrup, Michael, Hueser, Andrea T., Mertens, Dominik, and Goesmann, Alexander. 2009. “An evaluation framework for statistical tests on microarray data”. JOURNAL OF BIOTECHNOLOGY 140 (1-2): 18-26.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636699
Neuweger, Heiko, Albaum, Stefan, Dondrup, Michael, Persicke, Marcus, Watt, Tony, Niehaus, Karsten, Stoye, Jens, and Goesmann, Alexander. 2008. “MeltDB: a software platform for the analysis and integration of metabolomics experiment data”. Bioinformatics 24 (23): 2726-2732.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783292
Gross, Roy, Guzman, Carlos A., Sebaihia, Mohammed, Martins dos Santos, Vítor A. P., Pieper, Dietmar H., Koebnik, Ralf, Lechner, Melanie, et al. 2008. “The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae”. BMC Genomics 9 (1): 449.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592024
Vorhölter, Frank-Jörg, Schneiker-Bekel, Susanne, Goesmann, Alexander, Krause, Lutz, Bekel, Thomas, Kaiser, Olaf, Linke, Burkhard, et al. 2008. “The genome of Xanthomonas campestris pv. campestris B 100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis”. Journal of Biotechnology 134 (1-2): 33-45.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592257
Schoen, Christoph, Blom, Jochen, Claus, Heike, Schramm-Glueck, Anja, Brandt, Petra, Mueller, Tobias, Goesmann, Alexander, et al. 2008. “Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis”. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 105 (9): 3473-3478.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586009
Krause, Lutz, Diaz, Naryttza N., Edwards, Robert A., Gartemann, Karl-Heinz, Krömeke, Holger, Neuweger, Heiko, Pühler, Alfred, et al. 2008. “Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor”. JOURNAL OF BIOTECHNOLOGY 136 (1-2): 91-101.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585956
Stiens, Michael, Becker, Anke, Bekel, Thomas, Gödde, Victoria, Goesmann, Alexander, Niehaus, Karsten, Schneiker-Bekel, Susanne, et al. 2008. “Comparative genomic hybridisation and ultrafast pyrosequencing revealed remarkable differences between the Sinorhizobium meliloti genomes of the model strain Rm1021 and the field isolate SM11”. Journal of Biotechnology 136 (1-2): 31-37.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585987
Schlüter, Andreas, Bekel, Thomas, Diaz, Naryttza N., Dondrup, Michael, Eichenlaub, Rudolf, Gartemann, Karl-Heinz, Krahn, Irene, et al. 2008. “The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology”. Journal of Biotechnology 136 (1-2): 77-90.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585918
Tauch, Andreas, Trost, Eva, Tilker, Alexandra, Ludewig, Ulrike, Schneiker-Bekel, Susanne, Goesmann, Alexander, Arnold, Walter, et al. 2008. “The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencing”. Journal of Biotechnology 136 (1-2): 11-21.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586785
Oehm, Sebastian, Gilbert, David, Tauch, Andreas, Stoye, Jens, and Goesmann, Alexander. 2008. “Comparative Pathway Analyzer - a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms”. NUCLEIC ACIDS RESEARCH 36 (Web Server): W433-W437.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585939
Tauch, Andreas, Schneider, Jessica, Szczepanowski, Rafael, Tilker, Alexandra, Viehöver, Prisca, Gartemann, Karl-Heinz, Arnold, Walter, et al. 2008. “Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids”. Journal of Biotechnology 136 (1-2): 22-30.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783364
Krause, Lutz, Diaz, Naryttza N., Goesmann, Alexander, Kelley, Scott, Nattkemper, Tim Wilhelm, Rohwer, Forest, Edwards, Robert A., and Stoye, Jens. 2008. “Phylogenetic classification of short environmental DNA fragments”. Nucleic Acids Research 36 (7): 2230-2239.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018381
Albaum, Stefan, Neuweger, Heiko, Lange, Sita, Mertens, Dominik, Runte, Kai, Kalinowski, Jörn, Nattkemper, Tim Wilhelm, and Goesmann, Alexander. 2008. “ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract)”. In HUPO 7th Annual World Congress.
PUB
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1990198
Strauch, Eckhard, Hammerl, Jens Andre, Konietzny, Antje, Schneiker-Bekel, Susanne, Arnold, Walter, Goesmann, Alexander, Pühler, Alfred, and Beutin, Lothar. 2008. “Bacteriophage 2851 is a prototype phage for dissemination of the Shiga toxin variant gene 2c in Escherichia coli O157:H7”. Infection and Immunity 76 (12): 5466-5477.
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631047
Meisinger-Henschel, Christine, Schmidt, Michaela, Lukassen, Susanne, Linke, Burkhard, Krause, Lutz, Konietzny, Sebastian, Goesmann, Alexander, et al. 2007. “Genomic sequence of chorioallantois vaccinia virus Ankara, the ancestor of modified vaccinia virus Ankara”. JOURNAL OF GENERAL VIROLOGY 88 (12): 3249-3259.
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783754
Neuweger, Heiko, Baumbach, Jan, Albaum, Stefan, Bekel, Thomas, Dondrup, Michael, Hüser, Andrea T., Kalinowski, Jörn, et al. 2007. “CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data”. BMC Systems Biology 1 (1): 55.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631327
Schneiker-Bekel, Susanne, Perlova, Olena, Kaiser, Olaf, Gerth, Klaus, Alici, Aysel, Altmeyer, Matthias O., Bartels, Daniela, et al. 2007. “Complete genome sequence of the myxobacterium Sorangium cellulosum”. Nature Biotechnology 25 (11): 1281-1289.
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593149
Moran, M. A., Belas, R., Schell, M. A., Gonzalez, J. M., Sun, F., Sun, S., Binder, B. J., et al. 2007. “Ecological genomics of marine roseobacters”. APPLIED AND ENVIRONMENTAL MICROBIOLOGY 73 (14): 4559-4569.
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1594098
Wegmann, Udo, O'Connell-Motherwy, Mary, Zomer, Aldert, Buist, Girbe, Shearman, Claire, Canchaya, Carlos, Ventura, Marco, et al. 2007. “Complete genome sequence of the prototype lactic acid bacterium Lactococcus lactis subsp cremoris MG1363”. JOURNAL OF BACTERIOLOGY 189 (8): 3256-3270.
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593268
Bahl, Martin Iain, Hansen, Lars Hestbjerg, Goesmann, Alexander, and Sorensen, Soren J. 2007. “The multiple antibiotic resistance IncP-1 plasmid pKJK5 isolated from a soil environment is phylogenetically divergent from members of the previously established alpha, beta and delta sub-groups”. PLASMID 58 (1): 31-43.
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1894739
Küster, Helge, Becker, Anke, Firnhaber, Christian, Hohnjec, Natalija, Manthey, Katja, Perlick, Andreas M., Bekel, Thomas, et al. 2007. “Development of bioinformatic tools to support EST-sequencing, in silico- and microarray-based transcriptome profiling in mycorrhizal symbioses”. Phytochemistry 68 (1): 19-32.
PUB | DOI | WoS | PubMed | Europe PMC
 

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