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154 Publikationen

2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526269
T. Strobel, A. Al-Dilaimi, J. Blom, A. Gessner, J. Kalinowski, M. Luzhetska, A. Pühler, R. Szczepanowski, A. Bechthold, and C. Rückert, “Complete genome sequence of Saccharothrix espanaensis DSM 44229T and comparison to the other completely sequenced Pseudonocardiaceae”, BMC Genomics, 2012, 13, 465.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529610
S. Schork, A. Schlüter, J. Blom, S. Schneiker-Bekel, A. Pühler, A. Goesmann, M. Frosch, and C. Schoen, “Genome Sequence of a Neisseria meningitidis Capsule Null Locus Strain from the Clonal Complex of Sequence Type 198”, Journal of Bacteriology, 2012, 194, 5144-5145.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526281
M. Zischka, C. Kuenne, J. Blom, P. W. Dabrowski, B. Linke, T. Hain, A. Nitsche, A. Goesmann, J. Larsen, L. B. Jensen, et al., “Complete Genome Sequence of the Porcine Isolate Enterococcus faecalis D32”, Journal of Bacteriology, 2012, 194, 5490-5491.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526298
I. Maus, D. Wibberg, R. Stantscheff, F. G. Eikmeyer, A. Seffner, J. Boelter, R. Szczepanowski, J. Blom, S. Jaenicke, H. König, et al., “Complete Genome Sequence of the Hydrogenotrophic, Methanogenic Archaeon Methanoculleus bourgensis Strain MS2T, Isolated from a Sewage Sludge Digester”, Journal of Bacteriology, 2012, 194, 5487-5488.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526933
A. B. Dohrmann, M. Küting, S. Jünemann, S. Jaenicke, A. Schlüter, and C. C. Tebbe, “Importance of rare taxa for bacterial diversity in the rhizosphere of Bt- and conventional maize varieties”, The ISME journal, 2012, 7, 37-49.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2517230
S. Jünemann, K. Prior, R. Szczepanowski, I. Harks, B. Ehmke, A. Goesmann, J. Stoye, and D. Harmsen, “Bacterial Community Shift in Treated Periodontitis Patients Revealed by Ion Torrent 16S rRNA Gene Amplicon Sequencing”, PLoS ONE, 2012, 7, e41606.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500946
R. A. Mann, J. Blom, A. Bühlmann, K. M. Plummer, S. V. Beer, J. E. Luck, A. Goesmann, J. E. Frey, B. C. Rodoni, B. Duffy, et al., “Comparative analysis of the Hrp pathogenicity island of Rubus- and Spiraeoideae-infecting Erwinia amylovora strains identifies the IT region as a remnant of an integrative conjugative element”, Gene, 2012, 504, 6-12.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490286
U. Vogel, R. Szczepanowski, H. Claus, S. Jünemann, K. Prior, and D. Harmsen, “Ion Torrent PGM sequencing for genomic typing of Neisseria meningitidis for rapid determination of multiple layers of typing information”, Journal of clinical microbiology, 2012, 50, 1889-1894.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300063
S. Albaum, H. Hahne, A. Otto, U. Haußmann, D. Becher, A. Poetsch, A. Goesmann, and T. W. Nattkemper, “A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application study”, Proteome Science, 2011, 9, 30.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2451800
J. Toepel, S. Albaum, S. Arvidsson, A. Goesmann, M. La Russa, K. Rogge, and O. Kruse, “Construction and evaluation of a whole genome microarray of Chlamydomonas reinhardtii”, BMC Genomics, 2011, 12, 579-589.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375634
J. F. Pothier, F. - J. Vorhölter, J. Blom, A. Goesmann, A. Pühler, T. H. Smits, and B. Duffy, “The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis”, FEMS Microbiology Letters, 2011, 323, 52-60.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2404767
B. Niu, C. Rückert, J. Blom, Q. Wang, and R. Borriss, “The Genome of the Plant Growth-Promoting Rhizobacterium Paenibacillus polymyxa M-1 Contains Nine Sites Dedicated to Nonribosomal Synthesis of Lipopeptides and Polyketides.”, Journal of Bacteriology, 2011, 193, 5862-5863.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354731
D. Wibberg, J. Blom, S. Jaenicke, F. Kollin, O. Rupp, B. Scharf, S. Schneiker-Bekel, R. Szczepanowski, A. Goesmann, J. C. Setubal, et al., “Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid”, Journal of Biotechnology, 2011, 155, 50-62.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2317371
A. Küberl, J. Schneider, G. G. Thallinger, I. Anderl, D. Wibberg, T. Hajek, S. Jaenicke, K. Brinkrolf, A. Goesmann, R. Szczepanowski, et al., “High-quality genome sequence of Pichia pastoris CBS7435”, Journal of Biotechnology, 2011, 154, 312-320.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326511
C. Rückert, J. Blom, X. H. Chen, O. Reva, and R. Borriss, “Genome sequence of B. amyloliquefaciens type strain DSM7(T) reveals differences to plant-associated B. amyloliquefaciens FZB42”, Journal of Biotechnology, 2011, 155, 78-85.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2396576
J. Becker, M. Hackel, T. Jakobi, O. Rupp, J. Schneider, R. Szczepanowski, T. Bekel, N. Borth, A. Goesmann, J. Grillari, et al., “Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing”, Journal of Biotechnology, 2011, 156, 227-235.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2394493
D. Hinse, T. Vollmer, C. Rückert, J. Blom, J. Kalinowski, C. Knabbe, and J. Dreier, “Complete genome and comparative analysis of Streptococcus gallolyticus subsp gallolyticus, an emerging pathogen of infective endocarditis”, BMC Genomics, 2011, 12, 400.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289576
V. Thomas, C. Bertelli, F. Collyn, N. Casson, A. Telenti, A. Goesmann, A. Croxatto, and G. Greub, “Lausannevirus, a giant amoebal virus encoding histone doublets”, Environmental Microbiology, 2011, 13, 1454-1466.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375954
R. Borriss, X. - H. Chen, C. Rückert, J. Blom, A. Becker, B. Baumgarth, B. Fan, R. Pukall, P. Schumann, C. Sproer, et al., “Relationship of Bacillus amyloliquefaciens clades associated with strains DSM 7T and FZB42T: a proposal for Bacillus amyloliquefaciens subsp. amyloliquefaciens subsp. nov. and Bacillus amyloliquefaciens subsp. plantarum subsp. nov. based on complete genome sequence comparisons”, Int J Syst Evol Microbiol, 2011, 61, 1786-1801.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2472468
P. Llop, J. Cabrefiga, T. H. M. Smits, T. Dreo, S. Barbé, J. Pulawska, A. Bultreys, J. Blom, B. Duffy, E. Montesinos, et al., “Erwinia amylovora novel plasmid pEI70: Complete sequence, biogeography, and role in aggressiveness in the fire blight phytopathogen”, PLoS one, 2011, 6, e28651.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2411830
L. Ausec, M. Zakrzewski, A. Goesmann, A. Schlüter, and I. Mandic-Mulec, “Bioinformatic analysis reveals high diversity of bacterial genes for laccase-like enzymes”, PLoS ONE, 2011, 6, : e25724.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326445
J. Schneider, J. Blom, S. Jaenicke, B. Linke, K. Brinkrolf, H. Neuweger, A. Tauch, and A. Goesmann, “RAPYD - Rapid Annotation Platform for Yeast Data”, Journal of Biotechnology, 2011, 155, 118-126.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2307104
T. H. M. Smits, F. Rezzonico, T. Kamber, J. Blom, A. Goesmann, C. A. Ishimaru, J. E. Frey, V. O. Stockwell, and B. Duffy, “Metabolic Versatility and Antibacterial Metabolite Biosynthesis Are Distinguishing Genomic Features of the Fire Blight Antagonist Pantoea vagans C9-1”, PLoS ONE, 2011, 6, e22247.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2447730
J. M. Gonzalez, J. Pinhassi, B. Fernández-Gómez, M. Coll-Llado, M. Gonzalez-Velazquez, P. Puigbo, S. Jaenicke, L. Gomez-Consarnau, A. Fernandez-Guerra, A. Goesmann, et al., “Genomics of the proteorhodopsin-containing marine flavobacterium Dokdonia sp. MED134”, Applied and Environmental Microbiology, 2011, 77, 8676-8686.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2448409
F. Imperi, L. Antunes, J. Blom, L. Villa, M. Iacono, P. Visca, and A. Carattoli, “The genomics of Acinetobacter baumannii: Insights into genome plasticity, antimicrobial resistance and pathogenicity”, IUBMB life, 2011, 63, 1068-1074.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326455
E. Krol, J. Blom, J. Winnebald, A. Berhoerster, M. J. Barnett, A. Goesmann, J. Baumbach, and A. Becker, “RhizoRegNet-A database of rhizobial transcription factors and regulatory networks”, Journal of Biotechnology, 2011, 155, 127-134.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326518
R. Szczepanowski, F. G. Eikmeyer, J. Harfmann, J. Blom, L. M. Rogers, E. M. Top, and A. Schlüter, “Sequencing and comparative analysis of IncP-1 alpha antibiotic resistance plasmids reveal a highly conserved backbone and differences within accessory regions”, Journal of Biotechnology, 2011, 155, 95-103.
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2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2453768
J. Becker, C. Timmermann, T. Jakobi, O. Rupp, R. Szczepanowski, M. Hackl, A. Goesmann, A. Tauch, N. Borth, J. Grillari, et al., “Next-generation sequencing of the CHO cell transcriptome”, BMC Proceedings, 2011, 5, P6.
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2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2397780
D. Doppmeier, R. Stracke, P. Lutter, A. Goesmann, K. Niehaus, and B. Weisshaar, 2011, p. 218.
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2011 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2382565
R. Borriss, C. Rückert, J. Blom, O. Bezuidt, O. Reva, and H. P. Klenk, in Taxonomy of Prokaryotes (Methods in Microbiology) (Eds.: F. Rainey, A. Oren), Academic Press,, Waltham, MA, USA, 2011.
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2011 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2447751
S. Jaenicke, M. Zakrzewski, S. Jünemann, A. Pühler, A. Goesmann, and A. Schlüter, in Handbook of Molecular Microbial Ecology II: Metagenomics in Different Habitats (Ed.: F.J. de Bruijn), Wiley-Blackwell, 2011, p. 403-414.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2290032
B. Joseph, R. F. Schwarz, B. Linke, J. Blom, A. Becker, H. Claus, A. Goesmann, M. Frosch, T. Mueller, U. Vogel, et al., “Virulence Evolution of the Human Pathogen Neisseria meningitidis by Recombination in the Core and Accessory Genome”, PLoS ONE, 2011, 6, e18441.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093389
C. Schoen, J. Weber-Lehmann, J. Blom, B. Joseph, A. Goesmann, A. Strittmatter, and M. Frosch, “Whole-Genome Sequence of the Transformable Neisseria meningitidis Serogroup A Strain WUE2594”, Journal of Bacteriology, 2011, 193, 2064-2065.
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2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2289887
D. Hinse, T. Vollmer, C. Rückert, J. Blom, J. Kalinowski, C. Knabbe, and J. Dreier, “Complete Genome Analysis of Streptococcus gallolyticus subsp gallolyticus, an Emerging Pathogen of Infective Endocarditis”, Clinical Chemistry and Laboratory Medicine, 2011, 49, S837.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289902
T. B. De Gregoris, O. Rupp, S. Klages, F. Knaust, T. Bekel, M. Kube, J. G. Burgess, M. I. Arnone, A. Goesmann, R. Reinhardt, et al., “Deep sequencing of naupliar-, cyprid- and adult-specific normalised Expressed Sequence Tag (EST) libraries of the acorn barnacle Balanus amphitrite”, Biofouling, 2011, 27, 367-374.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289952
J. Blom, T. Jakobi, D. Doppmeier, S. Jaenicke, J. Kalinowski, J. Stoye, and A. Goesmann, “Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming”, Bioinformatics, 2011, 27, 1351-1358.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289928
R. Kant, J. Blom, A. Palva, R. J. Siezen, and W. M. de Vos, “Comparative genomics of Lactobacillus”, Microbial Biotechnology, 2011, 4, 323-332.
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2011 | Zeitschriftenaufsatz | Im Druck | PUB-ID: 2017892
S. Schneiker-Bekel, D. Wibberg, T. Bekel, J. Blom, B. Linke, H. Neuweger, M. Stiens, F. - J. Vorhölter, S. Weidner, A. Goesmann, et al., “The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome”, Journal of Biotechnology, In Press, 155, 20-33.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003276
S. Jaenicke, C. Ander, T. Bekel, R. Bisdorf, M. Dröge, K. - H. Gartemann, S. Jünemann, O. Kaiser, L. Krause, F. Tille, et al., “Comparative and Joint Analysis of Two Metagenomic Datasets from a Biogas Fermenter Obtained by 454-Pyrosequencing”, PLoS ONE, 2011, 6, e14519.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2036058
I. Margaret, A. Becker, J. Blom, I. Bonilla, A. Goesmann, M. Göttfert, J. Lloret, V. Mittard-Runte, C. Rückert, J. - E. Ruiz-Sainz, et al., “Symbiotic properties and first analyses of the genomic sequence of the fast growing model strain Sinorhizobium fredii HH103 nodulating soybean”, Journal of Biotechnology, 2011, 155, 11-19.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2087955
M. Hackl, T. Jakobi, J. Blom, D. Doppmeier, K. Brinkrolf, R. Szczepanowski, S. H. Bernhart, C. Höner zu Siederdissen, J. A. H. Bort, M. Wieser, et al., “Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering”, Journal of Biotechnology, 2011, 153, 62-75.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003418
R. Powney, T. H. M. Smits, T. Sawbridge, B. Frey, J. Blom, J. E. Frey, K. M. Plummer, S. V. Beer, J. Luck, B. Duffy, et al., “Genome Sequence of an Erwinia amylovora Strain with Pathogenicity Restricted to Rubus Plants”, Journal of Bacteriology, 2011, 193, 785-786.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093578
B. Linke, R. Giegerich, and A. Goesmann, “Conveyor: a workflow engine for bioinformatic analyses”, Bioinformatics, 2011, 27, 903-911.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093398
K. Brankatschk, J. Blom, A. Goesmann, T. H. M. Smits, and B. Duffy, “Genome of a European Fresh-Vegetable Food Safety Outbreak Strain of Salmonella enterica subsp enterica Serovar Weltevreden”, Journal of Bacteriology, 2011, 193, 2066.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929692
J. Schneider, F. - J. Vorhölter, E. Trost, J. Blom, Y. R. Musa, H. Neuweger, K. Niehaus, S. Schatschneider, A. Tauch, and A. Goesmann, “CARMEN - Comparative Analysis and in silico Reconstruction of organism-specific MEtabolic Networks”, Genetics and Molecular Research, 2010, 9, 1660-1672.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1966439
E. Trost, L. Ott, J. Schneider, J. Schröder, S. Jaenicke, A. Goesmann, P. Husemann, J. Stoye, F. Alves Dorella, F. Souza Rocha, et al., “The complete genome sequence of Corynebacterium pseudotuberculosis FRC41 isolated from a 12-year-old girl with necrotizing lymphadenitis reveals insights into gene-regulatory networks contributing to virulence”, BMC Genomics, 2010, 11, : 728.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1795508
C. Bertelli, F. Collyn, A. Croxatto, C. Rückert, A. Polkinghorne, C. Kebbi-Beghdadi, A. Goesmann, L. Vaughan, and G. Greub, “The Waddlia Genome: A Window into Chlamydial Biology”, PLOS ONE, 2010, 5, e10890.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1795628
T. H. M. Smits, F. Rezzonico, C. Pelludat, A. Goesmann, J. E. Frey, and B. Duffy, “Genomic and phenotypic characterization of a nonpigmented variant of Pantoea vagans biocontrol strain C9-1 lacking the 530-kb megaplasmid pPag3”, FEMS MICROBIOLOGY LETTERS, 2010, 308, 48-54.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785275
E. Trost, S. Götker, J. Schneider, S. Schneiker-Bekel, R. Szczepanowski, A. Tilker, P. Viehöver, W. Arnold, T. Bekel, J. Blom, et al., “Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortion”, BMC Genomics, 2010, 11, : 91.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785504
I. Yang, U. John, S. Beszteri, G. Glöckner, B. Krock, A. Goesmann, and A. D. Cembella, “Comparative gene expression in toxic versus non-toxic strains of the marine dinoflagellate Alexandrium minutum”, BMC Genomics, 2010, 11, 248.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1796445
T. H. M. Smits, F. Rezzonico, T. Kamber, J. Blom, A. Goesmann, J. E. Frey, and B. Duffy, “Complete Genome Sequence of the Fire Blight Pathogen Erwinia amylovora CFBP 1430 and Comparison to Other Erwinia spp.”, MOLECULAR PLANT-MICROBE INTERACTIONS, 2010, 23, 384-393.
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2010 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 1894907
V. Mittard-Runte, T. Bekel, J. Blom, M. Dondrup, K. Henckel, S. Jaenicke, L. Krause, B. Linke, H. Neuweger, S. Schneiker-Bekel, et al., in Introduction to Marine Genomics (Advances in Marine Genomics) (Eds.: J.M. Cock, K. Tessmar-Raible, C. Boyen, F. Viard), Springer Netherlands, Netherlands, 2010, p. 315-396.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1796644
T. H. M. Smits, S. Jaenicke, F. Rezzonico, T. Kamber, A. Goesmann, J. E. Frey, and B. Duffy, “Complete genome sequence of the fire blight pathogen Erwinia pyrifoliae DSM 12163(T) and comparative genomic insights into plant pathogenicity”, BMC Genomics, 2010, 11, 2.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785579
M. Farnbacher, T. Jahns, D. Willrodt, R. Daniel, R. Haas, A. Goesmann, S. Kurtz, and G. Rieder, “Sequencing, annotation, and comparative genome analysis of the gerbil-adapted Helicobacter pylori strain B8”, BMC Genomics, 2010, 11, 335.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588692
C. Steinweg, C. T. Kuenne, A. Billion, M. A. Mraheil, E. Domann, R. Ghai, S. B. Barbuddhe, U. Kaerst, A. Goesmann, A. Pühler, et al., “Complete Genome Sequence of Listeria seeligeri, a Nonpathogenic Member of the Genus Listeria”, Journal of Bacteriology, 2010, 192, 1473-1474.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1794039
C. Kuenne, S. Voget, J. Pischimarov, S. Oehm, A. Goesmann, R. Daniel, T. Hain, and T. Chakraborty, “Comparative Analysis of Plasmids in the Genus Listeria”, PLOS ONE, 2010, 5, e12511.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1894319
K. Henckel, H. Küster, L. Stutz, and A. Goesmann, “MediPlEx - a tool to combine in silico and experimental gene expression profiles of the model legume Medicago truncatula.”, BMC Research Notes, 2010, 3, 262.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1968262
T. H. M. Smits, F. Rezzonico, T. Kamber, A. Goesmann, C. A. Ishimaru, V. O. Stockwell, J. E. Frey, and B. Duffy, “Genome Sequence of the Biocontrol Agent Pantoea vagans Strain C9-1”, Journal of Bacteriology, 2010, 192, 6486-6487.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1990186
N. Gehlenborg, S. I. O'Donoghue, N. S. Baliga, A. Goesmann, M. A. Hibbs, H. Kitano, O. Kohlbacher, H. Neuweger, R. Schneider, D. Tenenbaum, et al., “Visualization of omics data for systems biology”, Nat Methods, 2010, 7, S56-S68.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1930110
B. Joseph, S. Schneiker-Bekel, A. Schramm-Glueck, J. Blom, H. Claus, B. Linke, R. F. Schwarz, A. Becker, A. Goesmann, M. Frosch, et al., “Comparative Genome Biology of a Serogroup B Carriage and Disease Strain Supports a Polygenic Nature of Meningococcal Virulence”, JOURNAL OF BACTERIOLOGY, 2010, 192, 5363-5377.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2397394
A. Goesmann, J. Schneider, E. Trost, and A. Tauch, “Entschlüsselung mikrobieller Genomsequenzen im Schnellverfahren”, BIOspektrum, 2009, 15, 279-281.
PUB
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783022
J. Krawczyk, A. Goesmann, R. Nolte, M. Werber, and B. Weisshaar, “Trace2PS and FSA2PS: two software toolkits for converting trace and fsa files to PostScript format”, Source Code for Biology and Medicine, 2009, 4, 4.
PUB | PDF | DOI | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783813
H. Neuweger, M. Persicke, S. Albaum, T. Bekel, M. Dondrup, A. T. Hüser, J. Winnebald, J. Schneider, J. Kalinowski, and A. Goesmann, “Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example”, BMC Systems Biology, 2009, 3, : 82.
PUB | PDF | DOI | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783187
J. Blom, S. Albaum, D. Doppmeier, A. Pühler, F. - J. Vorhölter, M. Zakrzewski, and A. Goesmann, “EDGAR: a software framework for the comparative analysis of prokaryotic genomes”, BMC Bioinformatics, 2009, 10, : 154.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635300
K. Henckel, K. J. Runte, T. Bekel, M. Dondrup, T. Jakobi, H. Küster, and A. Goesmann, “TRUNCATULIX - a data warehouse for the legume community”, BMC Plant Biology, 2009, 9, 19.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634097
A. W. Strittmatter, H. Liesegang, R. Rabus, I. Decker, J. Amann, S. Andres, A. Henne, W. F. Fricke, R. Martinez-Arias, D. Bartels, et al., “Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide”, ENVIRONMENTAL MICROBIOLOGY, 2009, 11, 1038-1055.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634467
A. Becker, M. J. Barnett, D. Capela, M. Dondrup, P. - B. Kamp, E. Krol, B. Linke, S. Rüberg, K. Runte, B. K. Schroeder, et al., “A portal for rhizobial genomes: RhizoGATE integrates a Sinorhizobium meliloti genome annotation update with postgenome data”, JOURNAL OF BIOTECHNOLOGY, 2009, 140, 45-50.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635314
N. N. Diaz, L. Krause, A. Goesmann, K. Niehaus, and T. W. Nattkemper, “TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach”, BMC Bioinformatics, 2009, 10, 56.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635321
M. Dondrup, S. Albaum, T. Griebel, K. Henckel, S. Jünemann, T. Kahlke, C. K. Kleindt, H. Kuester, B. Linke, D. Mertens, et al., “EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data”, BMC Bioinformatics, 2009, 10, : 50.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589098
W. Gerlach, S. Jünemann, F. Tille, A. Goesmann, and J. Stoye, “WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads”, BMC Bioinformatics, 2009, 10, 430.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531
S. Albaum, H. Neuweger, B. Fraenzel, S. Lange, D. Mertens, C. Troetschel, D. Wolters, J. Kalinowski, T. W. Nattkemper, and A. Goesmann, “Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments”, Bioinformatics, 2009, 25, 3128-3134.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589936
U. Wegmann, K. Overweg, N. Horn, A. Goesmann, A. Narbad, M. J. Gasson, and C. Shearman, “Complete Genome Sequence of Lactobacillus johnsonii FI9785, a Competitive Exclusion Agent against Pathogens in Poultry”, JOURNAL OF BACTERIOLOGY, 2009, 191, 7142-7143.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634447
T. Bekel, K. Henckel, H. Küster, F. Meyer, V. Mittard-Runte, H. Neuweger, D. Paarmann, O. Rupp, M. Zakrzewski, A. Pühler, et al., “The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies”, Journal of Biotechnology, 2009, 140, 3-12.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634461
M. Dondrup, A. T. Hueser, D. Mertens, and A. Goesmann, “An evaluation framework for statistical tests on microarray data”, JOURNAL OF BIOTECHNOLOGY, 2009, 140, 18-26.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636699
H. Neuweger, S. Albaum, M. Dondrup, M. Persicke, T. Watt, K. Niehaus, J. Stoye, and A. Goesmann, “MeltDB: a software platform for the analysis and integration of metabolomics experiment data”, Bioinformatics, 2008, 24, 2726-2732.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783292
R. Gross, C. A. Guzman, M. Sebaihia, V. A. P. Martins dos Santos, D. H. Pieper, R. Koebnik, M. Lechner, D. Bartels, J. Buhrmester, J. V. Choudhuri, et al., “The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae”, BMC Genomics, 2008, 9, 449.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592024
F. - J. Vorhölter, S. Schneiker-Bekel, A. Goesmann, L. Krause, T. Bekel, O. Kaiser, B. Linke, T. Patschkowski, C. Rückert, J. Schmid, et al., “The genome of Xanthomonas campestris pv. campestris B 100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis”, Journal of Biotechnology, 2008, 134, 33-45.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592257
C. Schoen, J. Blom, H. Claus, A. Schramm-Glueck, P. Brandt, T. Mueller, A. Goesmann, B. Joseph, S. Konietzny, O. Kurzai, et al., “Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis”, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105, 3473-3478.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586009
L. Krause, N. N. Diaz, R. A. Edwards, K. - H. Gartemann, H. Krömeke, H. Neuweger, A. Pühler, K. J. Runte, A. Schlüter, J. Stoye, et al., “Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor”, JOURNAL OF BIOTECHNOLOGY, 2008, 136, 91-101.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585956
M. Stiens, A. Becker, T. Bekel, V. Gödde, A. Goesmann, K. Niehaus, S. Schneiker-Bekel, W. Selbitschka, S. Weidner, A. Schlüter, et al., “Comparative genomic hybridisation and ultrafast pyrosequencing revealed remarkable differences between the Sinorhizobium meliloti genomes of the model strain Rm1021 and the field isolate SM11”, Journal of Biotechnology, 2008, 136, 31-37.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585987
A. Schlüter, T. Bekel, N. N. Diaz, M. Dondrup, R. Eichenlaub, K. - H. Gartemann, I. Krahn, L. Krause, H. Kroemeke, O. Kruse, et al., “The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology”, Journal of Biotechnology, 2008, 136, 77-90.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585918
A. Tauch, E. Trost, A. Tilker, U. Ludewig, S. Schneiker-Bekel, A. Goesmann, W. Arnold, T. Bekel, K. Brinkrolf, I. Brune, et al., “The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencing”, Journal of Biotechnology, 2008, 136, 11-21.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586785
S. Oehm, D. Gilbert, A. Tauch, J. Stoye, and A. Goesmann, “Comparative Pathway Analyzer - a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms”, NUCLEIC ACIDS RESEARCH, 2008, 36, W433-W437.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585939
A. Tauch, J. Schneider, R. Szczepanowski, A. Tilker, P. Viehöver, K. - H. Gartemann, W. Arnold, J. Blom, K. Brinkrolf, I. Brune, et al., “Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids”, Journal of Biotechnology, 2008, 136, 22-30.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783364
L. Krause, N. N. Diaz, A. Goesmann, S. Kelley, T. W. Nattkemper, F. Rohwer, R. A. Edwards, and J. Stoye, “Phylogenetic classification of short environmental DNA fragments”, Nucleic Acids Research, 2008, 36, 2230-2239.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018381
S. Albaum, H. Neuweger, S. Lange, D. Mertens, K. Runte, J. Kalinowski, T. W. Nattkemper, and A. Goesmann, in HUPO 7th Annual World Congress, 2008.
PUB
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1990198
E. Strauch, J. A. Hammerl, A. Konietzny, S. Schneiker-Bekel, W. Arnold, A. Goesmann, A. Pühler, and L. Beutin, “Bacteriophage 2851 is a prototype phage for dissemination of the Shiga toxin variant gene 2c in Escherichia coli O157:H7”, Infection and Immunity, 2008, 76, 5466-5477.
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631047
C. Meisinger-Henschel, M. Schmidt, S. Lukassen, B. Linke, L. Krause, S. Konietzny, A. Goesmann, P. Howley, P. Chaplin, M. Suter, et al., “Genomic sequence of chorioallantois vaccinia virus Ankara, the ancestor of modified vaccinia virus Ankara”, JOURNAL OF GENERAL VIROLOGY, 2007, 88, 3249-3259.
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783754
H. Neuweger, J. Baumbach, S. Albaum, T. Bekel, M. Dondrup, A. T. Hüser, J. Kalinowski, S. Oehm, A. Pühler, S. Rahmann, et al., “CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data”, BMC Systems Biology, 2007, 1, 55.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631327
S. Schneiker-Bekel, O. Perlova, O. Kaiser, K. Gerth, A. Alici, M. O. Altmeyer, D. Bartels, T. Bekel, S. Beyer, E. Bode, et al., “Complete genome sequence of the myxobacterium Sorangium cellulosum”, Nature Biotechnology, 2007, 25, 1281-1289.
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593149
M. A. Moran, R. Belas, M. A. Schell, J. M. Gonzalez, F. Sun, S. Sun, B. J. Binder, J. Edmonds, W. Ye, B. Orcutt, et al., “Ecological genomics of marine roseobacters”, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2007, 73, 4559-4569.
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1594098
U. Wegmann, M. O'Connell-Motherwy, A. Zomer, G. Buist, C. Shearman, C. Canchaya, M. Ventura, A. Goesmann, M. J. Gasson, O. P. Kuipers, et al., “Complete genome sequence of the prototype lactic acid bacterium Lactococcus lactis subsp cremoris MG1363”, JOURNAL OF BACTERIOLOGY, 2007, 189, 3256-3270.
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593268
M. I. Bahl, L. H. Hansen, A. Goesmann, and S. J. Sorensen, “The multiple antibiotic resistance IncP-1 plasmid pKJK5 isolated from a soil environment is phylogenetically divergent from members of the previously established alpha, beta and delta sub-groups”, PLASMID, 2007, 58, 31-43.
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1894739
H. Küster, A. Becker, C. Firnhaber, N. Hohnjec, K. Manthey, A. M. Perlick, T. Bekel, M. Dondrup, K. Henckel, A. Goesmann, et al., “Development of bioinformatic tools to support EST-sequencing, in silico- and microarray-based transcriptome profiling in mycorrhizal symbioses”, Phytochemistry, 2007, 68, 19-32.
PUB | DOI | WoS | PubMed | Europe PMC
 

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