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154 Publikationen

2015 | Bielefelder E-Dissertation | PUB-ID: 2786037 PUB | Dateien verfügbar
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2656773
Construction of a Public CHO Cell Line Transcript Database Using Versatile Bioinformatics Analysis Pipelines
Rupp O, Becker J, Brinkrolf K, Timmermann C, Borth N, Pühler A, Noll T, Goesmann A (2014)
PLoS ONE 9(1): e85568.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2643946
The genome of the recently domesticated crop plant sugar beet (Beta vulgaris)
Dohm JC, Minoche AE, Holtgräwe D, Capella-Gutiérrez S, Zakrzewski F, Tafer H, Rupp O, Rosleff Sörensen T, Stracke R, Reinhardt R, Goesmann A, et al. (2014)
Nature 505(7484): 546-549.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2651944
Genome Sequence of the Small-Colony Variant Pseudomonas aeruginosa MH27, Isolated from a Chronic Urethral Catheter Infection
Tielen P, Wibberg D, Blom J, Rosin N, Meyer A-K, Bunk B, Schobert M, Tüpker R, Schatschneider S, Rückert C, Albersmeier A, et al. (2014)
Genome announcements 2(1).
PUB | DOI | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2691732
Carbohydrate-active enzymes identified by metagenomic analysis of deep-sea sediment bacteria
Klippel B, Sahm K, Basner A, Wiebusch S, John P, Lorenz U, Peters A, Abe F, Takahashi K, Kaiser O, Goesmann A, et al. (2014)
Extremophiles 18(5): 853-863.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2555342
Genome sequence of the plant growth promoting strain Bacillus amyloliquefaciens subsp. plantarum B9601-Y2 and expression of mersacidin and other secondary metabolites
He P, Hao K, Blom J, Rückert C, Vater J, Mao Z, Wu Y, Hou M, He P, He Y, Borriss R (2013)
Journal of biotechnology 164(2): 281-291.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2552500
The Pan-Genome of the Animal Pathogen Corynebacterium pseudotuberculosis Reveals Differences in Genome Plasticity between the Biovar ovis and equi Strains
Soares SC, Silva A, Trost E, Blom J, Ramos R, Carneiro A, Ali A, Santos AR, Pinto AC, Diniz C, Barbosa EGV, et al. (2013)
PLoS ONE 8(1): e53818.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2549908
Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14
Wibberg D, Jelonek L, Rupp O, Kröber M, Eikmeyer FG, Goesmann A, Hartmann A, Borriss R, Grosch R, Pühler A, Schlüter A (2013)
Journal of Biotechnology 167(2): 142-155.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2606943
Radically different phylogeographies and patterns of genetic variation in two European brown frogs, genus Rana
Vences M, Hauswaldt S, Steinfartz S, Rupp O, Goesmann A, Künzel S, Orozco-Terwengel P, Vieites DR, Nieto-Roman S, Haas S, Laugsch C, et al. (2013)
Molecular phylogenetics and evolution 68(3): 657-670.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2602756
Phylogenetic position and virulence apparatus of the pear flower necrosis pathogen Erwinia piriflorinigrans CFBP 5888(T) as assessed by comparative genomics
Smits THM, Rezzonico F, López MM, Blom J, Goesmann A, Frey JE, Duffy B (2013)
Systematic and applied microbiology 36(7): 449-456.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2641228
Corrigendum: Updating benchtop sequencing performance comparison
Jünemann S, Sedlazeck FJ, Prior K, Albersmeier A, John U, Kalinowski J, Mellmann A, Goesmann A, von Haeseler A, Stoye J, Harmsen D (2013)
Nature biotechnology 31(12): 1148.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2637220
The Rhizobacterium Bacillus amyloliquefaciens subsp. plantarum NAU-B3 Contains a Large Inversion within the Central Portion of the Genome
Wu H, Qiao J, Blom J, Rückert C, Reva O, Gao X, Borriss R (2013)
Genome announcements 1(6): e00941-13.
PUB | DOI | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2633427
Draft Genome Sequence of Sinorhizobium meliloti RU11/001, a model organism for flagellum structure, motility and chemotaxis
Wibberg D, Blom J, Rückert C, Winkler A, Albersmeier A, Pühler A, Schlüter A, Scharf BE (2013)
Journal of Biotechnology 168(4): 731-733.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2632946
Complete genome sequence of Pseudomonas sp. strain VLB120 a solvent tolerant, styrene degrading bacterium, isolated from forest soil
Köhler KAK, Rückert C, Schatschneider S, Vorhölter F-J, Szczepanowski R, Blank LM, Niehaus K, Goesmann A, Pühler A, Kalinowski J, Schmid A (2013)
Journal of Biotechnology 168(4): 729-730.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2622238
Complete sequence of Erwinia piriflorinigrans plasmids pEPIR37 and pEPIR5 and role of pEPIR37 in pathogen virulence
Barbe S, Llop P, Blom J, Cabrefiga J, Goesmann A, Duffy B, Montesinos E, Smits THM, Lopez MM (2013)
Plant Pathology 62(4): 786-798.
PUB | DOI | WoS
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2615581
Chinese hamster genome sequenced from sorted chromosomes
Brinkrolf K, Rupp O, Laux H, Kollin F, Ernst W, Linke B, Kofler R, Romand S, Hesse F, Budach WE, Galosy S, et al. (2013)
Nature Biotechnology 31(8): 694-695.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Bielefelder E-Dissertation | PUB-ID: 2604883
Comparative genomics on gene and single nucleotide level
Blom J (2013)
Bielefeld: Universitätsbibliothek.
PUB | PDF
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2564601
Genomics and Physiology of a Marine Flavobacterium Encoding a Proteorhodopsin and a Xanthorhodopsin-Like Protein
Riedel T, Gómez-Consarnau L, Tomasch J, Martin M, Jarek M, González JM, Spring S, Rohlfs M, Brinkhoff T, Cypionka H, Göker M, et al. (2013)
PLOS ONE 8(3): e57487.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2558460
Whole Genome Sequencing versus Traditional Genotyping for Investigation of a Mycobacterium tuberculosis Outbreak: A Longitudinal Molecular Epidemiological Study
Roetzer A, Diel R, Kohl TA, Rückert C, Nübel U, Blom J, Wirth T, Jaenicke S, Schuback S, Rüsch-Gerdes S, Supply P, et al. (2013)
PLoS medicine 10(2): e1001387.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560837
Complete Genome Sequence of the Probiotic Enterococcus faecalis Symbioflor 1 Clone DSM 16431
Fritzenwanker M, Kuenne C, Billion A, Hain T, Zimmermann K, Goesmann A, Chakraborty T, Domann E (2013)
Genome Announcements 1(1): e00165-12.
PUB | DOI | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2576080
New insights into Chlamydomonas reinhardtii hydrogen production processes by combined microarray/RNA-seq transcriptomics
Toepel J, Illmer-Kephalides M, Jaenicke S, Straube J, May P, Goesmann A, Kruse O (2013)
Plant Biotechnology Journal 11(6): 717-733.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2631956
Complete genome sequence of the kirromycin producer Streptomyces collinus Tü 365 consisting of a linear chromosome and two linear plasmids
Rückert C, Szczepanowski R, Albersmeier A, Goesmann A, Iftime D, Musiol EM, Blin K, Wohlleben W, Pühler A, Kalinowski J, Weber T (2013)
Journal of Biotechnology 168(4): 739-740.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2576539
The noncanonical type III secretion system of Xanthomonas translucens pv. graminis is essential for forage grass infection
Wichmann F, Vorhölter F-J, Hersemann L, Widmer F, Blom J, Niehaus K, Reinhard S, Conradin C, Kölliker R (2013)
Molecular plant pathology 14(6): 576-588.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2635526
Draft genome sequence of the cellulolytic Clostridium thermocellum wild-type strain BC1 playing a role in cellulosic biomass degradation
Koeck DE, Wibberg D, Koellmeier T, Blom J, Jaenicke S, Winkler A, Albersmeier A, Zverlov VV, Pühler A, Schwarz WH, Schlüter A (2013)
Journal of Biotechnology 168(1): 62-63.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2566922
Updating benchtop sequencing performance comparison
Jünemann S, Sedlazeck FJ, Prior K, Albersmeier A, John U, Kalinowski J, Mellmann A, Goesmann A, von Haeseler A, Stoye J, Harmsen D (2013)
Nature Biotechnology 31(4): 294-296.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2557938
Comparative Genomics of 12 Strains of Erwinia amylovora Identifies a Pan-Genome with a Large Conserved Core
Mann RA, Smits THM, Bühlmann A, Blom J, Goesmann A, Frey JE, Plummer KM, Beer SV, Luck J, Duffy B, Rodoni B (2013)
PLOS ONE 8(2): e55644.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2561776
Proteome turnover in bacteria: current status for Corynebacterium glutamicum and related bacteria
Trötschel C, Albaum S, Poetsch A (2013)
Microbial biotechnology: 708-719.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2554079
Reassessment of the Listeria monocytogenes pan-genome reveals dynamic integration hotspots and mobile genetic elements as major components of the accessory genome
Kuenne C, Billion A, Mraheil MA, Strittmatter A, Daniel R, Goesmann A, Barbuddhe S, Hain T, Chakraborty T (2013)
BMC Genomics 14(1): 47.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548286
Draft whole genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344
Luque-Almagro VM, Acera F, Igeño MI, Wibberg D, Roldán MD, Sáez LP, Hennig M, Quesada A, Huertas MJ, Blom J, Merchán F, et al. (2013)
Environmental Microbiology 15(1): 253-270.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645668
Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production
Bogen C, Al-Dilaimi A, Albersmeier A, Wichmann J, Grundmann M, Rupp O, Lauersen KJ, Blifernez-Klassen O, Kalinowski J, Goesmann A, Mussgnug JH, et al. (2013)
BMC Genomics 14(1): 926.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2635520 PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2610129
MeltDB 2.0 - Advances of the metabolomics software system
Kessler N, Bonte A, Langenkämper G, Niehaus K, Goesmann A, Nattkemper TW (2013)
Bioinformatics 29(19): 2452-2459.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2607974
Polymyxin P is the active principle in suppressing phytopathogenic Erwinia spp. by the biocontrol rhizobacterium Paenibacillus polymyxa M-1
Niu B, Vater J, Rückert C, Blom J, Lehmann M, Ru J-J, Chen X-H, Wang Q, Borriss R (2013)
BMC microbiology 13(1): 137.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529309
Changes in Root Bacterial Communities Associated to Two Different Development Stages of Canola (*Brassica napus* L. var oleifera) Evaluated through Next-Generation Sequencing
Bolzan de Campos S, Youn J-W, Farina R, Jaenicke S, Jünemann S, Szczepanowski R, Beneduzi A, Vargas LK, Wendisch VF, Passaglia L (2013)
Microbial Ecology 65(3): 593-601.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529202
MetaSAMS - A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets
Zakrzewski M, Bekel T, Ander C, Pühler A, Rupp O, Stoye J, Schlüter A, Goesmann A (2013)
Journal of Biotechnology 167(2): 156-165.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Konferenzbeitrag | Im Druck | PUB-ID: 2538625
Einsatz von Protein- und Metabolit-Profiling-Methoden zur Unterscheidung von ökologischem und konventionellem Weizen
Bonte A, Kessler N, Nattkemper TW, Goesmann A, Cecile T, Mäder P, Niehaus K, Langenkämper G (In Press)
Presented at the 12. Wissenschaftstagung Ökologischer Landbau „Ideal und Wirklichkeit – Perspektiven Ökologischer Landbewirtschaftung“, Bonn, Germany.
PUB
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498160
Complete genome sequence, lifestyle, and multi-drug resistance of the human pathogen Corynebacterium resistens DSM 45100 isolated from blood samples of a leukemia patient
Schröder J, Maus I, Meyer K, Wördemann S, Blom J, Jaenicke S, Schneider J, Trost E, Tauch A (2012)
BMC Genomics 13(1): 141.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2484618
Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing
Zakrzewski M, Goesmann A, Jaenicke S, Jünemann S, Eikmeyer FG, Szczepanowski R, Al-Soud WA, Sørensen S, Pühler A, Schlüter A (2012)
Journal of Biotechnology 158(4): 248-258.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2513347
Pangenomic Study of Corynebacterium diphtheriae That Provides Insights into the Genomic Diversity of Pathogenic Isolates from Cases of Classical Diphtheria, Endocarditis, and Pneumonia
Trost E, Blom J, de Castro Soares S, Huang I-H, Al-Dilaimi A, Schröder J, Jaenicke S, Dorella FA, Rocha FS, Miyoshi A, Azevedo V, et al. (2012)
Journal of bacteriology 194(12): 3199-3215.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500990
Root metabolic response of rice (Oryza sativa L.) genotypes with contrasting tolerance to zinc deficiency and bicarbonate excess
Rose MT, Rose TJ, Pariasca-Tanaka J, Yoshihashi T, Neuweger H, Goesmann A, Frei M, Wissuwa M (2012)
Planta 236(4): 959-973.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490949
Identification and Characterization of Microcin S, a New Antibacterial Peptide Produced by Probiotic Escherichia coli G3/10
Zschuttig A, Zimmermann K, Blom J, Goesmann A, Pohlmann C, Gunzer F (2012)
PLoS ONE 7(3): e33351.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2527519
Evaluation of qPCR curve analysis methods for reliable biomarker discovery: Bias, resolution, precision, and implications
Ruijter JM, Pfaffl MW, Zhao S, Spiess AN, Boggy G, Blom J, Rutledge RG, Sisti D, Lievens A, De Preter K, Derveaux S, et al. (2012)
Methods. A companion to methods in enzymology (San Diego, Calif.) 59(1): 32-46.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2530221
The genome sequence of the bacterium Streptomyces davawensis JCM 4913 and heterologous production of the unique antibiotic roseoflavin
Jankowitsch F, Schwarz J, Rückert C, Gust B, Szczepanowski R, Blom J, Pelzer S, Kalinowski J, Mack M (2012)
Journal of bacteriology 194(24): 6818-6827.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2471858
Correction: bioinformatic analysis reveals high diversity of bacterial genes for laccase-like enzymes
Ausec L, Zakrzewski M, Goesmann A, Schlüter A, Mandic-Mulec I (2012)
PLoS ONE 7(1).
PUB | DOI | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2553455
The large universal Pantoea plasmid LPP-1 plays a major role in biological and ecological diversification
De Maayer P, Chan W-Y, Blom J, Venter SN, Duffy B, Smits THM, Coutinho TA (2012)
Bmc Genomics 13(1): 625.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490535
Insights into the completely annotated genome of Lactobacillus buchneri CD034, a strain isolated from stable grass silage
Heinl S, Wibberg D, Eikmeyer FG, Szczepanowski R, Blom J, Linke B, Goesmann A, Grabherr R, Schwab H, Pühler A, Schlüter A (2012)
Journal of Biotechnology 161(2): 153-166.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2471681
Characterization of microbial biofilms in a thermophilic biogas system by high-throughput metagenome sequencing
Rademacher A, Zakrzewski M, Schlüter A, Schonberg M, Szczepanowski R, Goesmann A, Pühler A, Klocke M (2012)
FEMS Microbiology Ecology 79(3): 785-799.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2513256
Genome Sequence of Fibrella aestuarina BUZ 2T, a Filamentous Marine Bacterium
Filippini M, Qi W, Blom J, Goesmann A, Smits THM, Bagheri HC (2012)
Journal of bacteriology 194(13): 3555.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498232
Protein turnover quantification in a multi-labeling approach - from data calculation to evaluation
Trötschel C, Albaum S, Wolff D, Schröder S, Goesmann A, Nattkemper TW, Poetsch A (2012)
Molecular & Cellular Proteomics 11(8): 512-526.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2487853
Comparative genomic analysis of Salmonella enterica subsp. enterica serovar Weltevreden foodborne strains with other serovars
Brankatschk K, Blom J, Goesmann A, Smits THM, Duffy B (2012)
International journal of food microbiology 155(3): 247-256.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2486204
The Complete Genome of Bacillus amyloliquefaciens subsp. plantarum CAU B946 Contains a Gene Cluster for Nonribosomal Synthesis of Iturin A
Blom J, Rückert C, Niu B, Wang Q, Borriss R (2012)
Journal of bacteriology 194(7): 1845-1846.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2478526
Computational identification of microRNA gene loci and precursor microRNA sequences in CHO cell lines
Hackl M, Jadhav V, Jakobi T, Rupp O, Brinkrolf K, Goesmann A, Pühler A, Noll T, Borth N, Grillari J (2012)
Journal of Biotechnology 158(3): 151-155.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2405255
MSEA: metabolite set enrichment analysis in the MeltDB metabolomics software platform: metabolic profiling of Corynebacterium glutamicum as an example
Persicke M, Rückert C, Plassmeier J, Stutz L, Kessler N, Kalinowski J, Goesmann A, Neuweger H (2012)
Metabolomics 8(2): 310-322.
PUB | DOI | WoS
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2510984
UniMoG - A unifying framework for genomic distance calculation and sorting based on DCJ
Hilker R, Sickinger C, Pedersen CNS, Stoye J (2012)
Bioinformatics 28(19): 2509-2511.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500959
Unique core genomes of the bacterial family vibrionaceae: Insights into niche adaptation and speciation
Kahlke T, Goesmann A, Hjerde E, Willassen NP, Haugen P (2012)
BMC genomics 13(1): 179.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500966
Comparative genomics and transcriptomics of lineages I, II, and III strains of Listeria monocytogenes
Hain T, Ghai R, Billion A, Kuenne CT, Steinweg C, Izar B, Mohamed W, Mraheil M, Domann E, Schaffrath S, Kärst U, et al. (2012)
BMC Genomics 13(1): 144.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2544774
Draft Genome Sequence of Wickerhamomyces ciferrii NRRL Y-1031 F-60-10
Schneider J, Andrea H, Blom J, Jaenicke S, Rückert C, Schorsch C, Szczepanowski R, Farwick M, Goesmann A, Pühler A, Schaffer S, et al. (2012)
Eukaryotic Cell 11(12): 1582-1583.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500937
Lipopolysaccharide biosynthesis genes discriminate between Rubus- and Spiraeoideae-infective genotypes of Erwinia amylovora
Rezzonico F, Braun-Kiewnick A, Mann RA, Rodoni B, Goesmann A, Duffy B, Smits THM (2012)
Molecular plant pathology 13(8): 975-984.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501081
Complete genome sequence of clinical isolate Pantoea ananatis LMG 5342
De Maayer P, Chan WY, Rezzonico F, Bühlmann A, Venter SN, Blom J, Goesmann A, Frey JE, Smits THM, Duffy B, Coutinho TA (2012)
Journal of Bacteriology 194(6): 1615-1616.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2542210 PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526269
Complete genome sequence of Saccharothrix espanaensis DSM 44229T and comparison to the other completely sequenced Pseudonocardiaceae
Strobel T, Al-Dilaimi A, Blom J, Gessner A, Kalinowski J, Luzhetska M, Pühler A, Szczepanowski R, Bechthold A, Rückert C (2012)
BMC Genomics 13(1): 465.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529610
Genome Sequence of a Neisseria meningitidis Capsule Null Locus Strain from the Clonal Complex of Sequence Type 198
Schork S, Schlüter A, Blom J, Schneiker-Bekel S, Pühler A, Goesmann A, Frosch M, Schoen C (2012)
Journal of Bacteriology 194(18): 5144-5145.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526281
Complete Genome Sequence of the Porcine Isolate Enterococcus faecalis D32
Zischka M, Kuenne C, Blom J, Dabrowski PW, Linke B, Hain T, Nitsche A, Goesmann A, Larsen J, Jensen LB, Witte W, et al. (2012)
Journal of Bacteriology 194(19): 5490-5491.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526298
Complete Genome Sequence of the Hydrogenotrophic, Methanogenic Archaeon Methanoculleus bourgensis Strain MS2T, Isolated from a Sewage Sludge Digester
Maus I, Wibberg D, Stantscheff R, Eikmeyer FG, Seffner A, Boelter J, Szczepanowski R, Blom J, Jaenicke S, König H, Pühler A, et al. (2012)
Journal of Bacteriology 194(19): 5487-5488.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526933
Importance of rare taxa for bacterial diversity in the rhizosphere of Bt- and conventional maize varieties
Dohrmann AB, Küting M, Jünemann S, Jaenicke S, Schlüter A, Tebbe CC (2012)
The ISME journal 7(1): 37-49.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2517230
Bacterial Community Shift in Treated Periodontitis Patients Revealed by Ion Torrent 16S rRNA Gene Amplicon Sequencing
Jünemann S, Prior K, Szczepanowski R, Harks I, Ehmke B, Goesmann A, Stoye J, Harmsen D (2012)
PLoS ONE 7(8): e41606.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500946
Comparative analysis of the Hrp pathogenicity island of Rubus- and Spiraeoideae-infecting Erwinia amylovora strains identifies the IT region as a remnant of an integrative conjugative element
Mann RA, Blom J, Bühlmann A, Plummer KM, Beer SV, Luck JE, Goesmann A, Frey JE, Rodoni BC, Duffy B, Smits THM (2012)
Gene 504(1): 6-12.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490286
Ion Torrent PGM sequencing for genomic typing of Neisseria meningitidis for rapid determination of multiple layers of typing information
Vogel U, Szczepanowski R, Claus H, Jünemann S, Prior K, Harmsen D (2012)
Journal of clinical microbiology 50(6): 1889-1894.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300063
A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application study
Albaum S, Hahne H, Otto A, Haußmann U, Becher D, Poetsch A, Goesmann A, Nattkemper TW (2011)
Proteome Science 9(1): 30.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2451800
Construction and evaluation of a whole genome microarray of Chlamydomonas reinhardtii
Toepel J, Albaum S, Arvidsson S, Goesmann A, La Russa M, Rogge K, Kruse O (2011)
BMC Genomics 12(1): 579-589.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375634
The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis
Pothier JF, Vorhölter F-J, Blom J, Goesmann A, Pühler A, Smits TH, Duffy B (2011)
FEMS Microbiology Letters 323(1): 52-60.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2404767 PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354731
Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid
Wibberg D, Blom J, Jaenicke S, Kollin F, Rupp O, Scharf B, Schneiker-Bekel S, Szczepanowski R, Goesmann A, Setubal JC, Schmitt R, et al. (2011)
Journal of Biotechnology 155(1): 50-62.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2317371
High-quality genome sequence of Pichia pastoris CBS7435
Küberl A, Schneider J, Thallinger GG, Anderl I, Wibberg D, Hajek T, Jaenicke S, Brinkrolf K, Goesmann A, Szczepanowski R, Pühler A, et al. (2011)
Journal of Biotechnology 154(4): 312-320.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326511
Genome sequence of B. amyloliquefaciens type strain DSM7(T) reveals differences to plant-associated B. amyloliquefaciens FZB42
Rückert C, Blom J, Chen XH, Reva O, Borriss R (2011)
Journal of Biotechnology 155(1): 78-85.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2394493
Complete genome and comparative analysis of Streptococcus gallolyticus subsp gallolyticus, an emerging pathogen of infective endocarditis
Hinse D, Vollmer T, Rückert C, Blom J, Kalinowski J, Knabbe C, Dreier J (2011)
BMC Genomics 12(1): 400.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2396576
Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing
Becker J, Hackel M, Jakobi T, Rupp O, Schneider J, Szczepanowski R, Bekel T, Borth N, Goesmann A, Grillari J, Kaltschmidt C, et al. (2011)
Journal of Biotechnology 156(3): 227-235.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289576
Lausannevirus, a giant amoebal virus encoding histone doublets
Thomas V, Bertelli C, Collyn F, Casson N, Telenti A, Goesmann A, Croxatto A, Greub G (2011)
Environmental Microbiology 13(6): 1454-1466.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375954 PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2472468
Erwinia amylovora novel plasmid pEI70: Complete sequence, biogeography, and role in aggressiveness in the fire blight phytopathogen
Llop P, Cabrefiga J, Smits THM, Dreo T, Barbé S, Pulawska J, Bultreys A, Blom J, Duffy B, Montesinos E, Lopez MM (2011)
PLoS one 6(12): e28651.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2411830
Bioinformatic analysis reveals high diversity of bacterial genes for laccase-like enzymes
Ausec L, Zakrzewski M, Goesmann A, Schlüter A, Mandic-Mulec I (2011)
PLoS ONE 6(10): e25724.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326445
RAPYD - Rapid Annotation Platform for Yeast Data
Schneider J, Blom J, Jaenicke S, Linke B, Brinkrolf K, Neuweger H, Tauch A, Goesmann A (2011)
Journal of Biotechnology 155(1): 118-126.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2307104
Metabolic Versatility and Antibacterial Metabolite Biosynthesis Are Distinguishing Genomic Features of the Fire Blight Antagonist Pantoea vagans C9-1
Smits THM, Rezzonico F, Kamber T, Blom J, Goesmann A, Ishimaru CA, Frey JE, Stockwell VO, Duffy B (2011)
PLoS ONE 6(7): e22247.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2447730
Genomics of the proteorhodopsin-containing marine flavobacterium Dokdonia sp. MED134
Gonzalez JM, Pinhassi J, Fernández-Gómez B, Coll-Llado M, Gonzalez-Velazquez M, Puigbo P, Jaenicke S, Gomez-Consarnau L, Fernandez-Guerra A, Goesmann A, Pedros-Alio C (2011)
Applied and Environmental Microbiology 77(24): 8676-8686.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2448409
The genomics of Acinetobacter baumannii: Insights into genome plasticity, antimicrobial resistance and pathogenicity
Imperi F, Antunes L, Blom J, Villa L, Iacono M, Visca P, Carattoli A (2011)
IUBMB life 63(12): 1068-1074.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326455
RhizoRegNet-A database of rhizobial transcription factors and regulatory networks
Krol E, Blom J, Winnebald J, Berhoerster A, Barnett MJ, Goesmann A, Baumbach J, Becker A (2011)
Journal of Biotechnology 155(1): 127-134.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326518
Sequencing and comparative analysis of IncP-1 alpha antibiotic resistance plasmids reveal a highly conserved backbone and differences within accessory regions
Szczepanowski R, Eikmeyer FG, Harfmann J, Blom J, Rogers LM, Top EM, Schlüter A (2011)
Journal of Biotechnology 155(1): 95-103.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2453768
Next-generation sequencing of the CHO cell transcriptome
Becker J, Timmermann C, Jakobi T, Rupp O, Szczepanowski R, Hackl M, Goesmann A, Tauch A, Borth N, Grillari J, Pühler A, et al. (2011)
BMC Proceedings 5(Suppl. 8): P6.
PUB | DOI
 
2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2397780
Using the GUS Reporter Gene for Quantitative Studies of Promotor Activity in A.thaliana Seedlings
Doppmeier D, Stracke R, Lutter P, Goesmann A, Niehaus K, Weisshaar B (2011)
Presented at the ICSB 2011 Heidelberg/Mannheim, Heidelberg/Mannheim, Germany.
PUB
 
2011 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2382565
Whole Genome Sequence Comparisons in Taxonomy
Borriss R, Rückert C, Blom J, Bezuidt O, Reva O, Klenk HP (2011)
In: Taxonomy of Prokaryotes (Methods in Microbiology). Rainey F, Oren A (Eds); Waltham, MA, USA: Academic Press,.
PUB | DOI | WoS
 
2011 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2447751
Analysis of the Metagenome from a Biogas-Producing Microbial Community by Means of Bioinformatics Methods
Jaenicke S, Zakrzewski M, Jünemann S, Pühler A, Goesmann A, Schlüter A (2011)
In: Handbook of Molecular Microbial Ecology II: Metagenomics in Different Habitats. de Bruijn FJ (Ed); Wiley-Blackwell: 403-414.
PUB | DOI
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2290032
Virulence Evolution of the Human Pathogen Neisseria meningitidis by Recombination in the Core and Accessory Genome
Joseph B, Schwarz RF, Linke B, Blom J, Becker A, Claus H, Goesmann A, Frosch M, Mueller T, Vogel U, Schoen C (2011)
PLoS ONE 6(4): e18441.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093389
Whole-Genome Sequence of the Transformable Neisseria meningitidis Serogroup A Strain WUE2594
Schoen C, Weber-Lehmann J, Blom J, Joseph B, Goesmann A, Strittmatter A, Frosch M (2011)
Journal of Bacteriology 193(8): 2064-2065.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2289887
Complete Genome Analysis of Streptococcus gallolyticus subsp gallolyticus, an Emerging Pathogen of Infective Endocarditis
Hinse D, Vollmer T, Rückert C, Blom J, Kalinowski J, Knabbe C, Dreier J (2011)
Clinical Chemistry and Laboratory Medicine 49: S837.
PUB | WoS
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289902
Deep sequencing of naupliar-, cyprid- and adult-specific normalised Expressed Sequence Tag (EST) libraries of the acorn barnacle Balanus amphitrite
De Gregoris TB, Rupp O, Klages S, Knaust F, Bekel T, Kube M, Burgess JG, Arnone MI, Goesmann A, Reinhardt R, Clare AS (2011)
Biofouling 27(4): 367-374.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289952
Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming
Blom J, Jakobi T, Doppmeier D, Jaenicke S, Kalinowski J, Stoye J, Goesmann A (2011)
Bioinformatics 27(10): 1351-1358.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289928
Comparative genomics of Lactobacillus
Kant R, Blom J, Palva A, Siezen RJ, de Vos WM (2011)
Microbial Biotechnology 4(3): 323-332.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Im Druck | PUB-ID: 2017892
The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome
Schneiker-Bekel S, Wibberg D, Bekel T, Blom J, Linke B, Neuweger H, Stiens M, Vorhölter F-J, Weidner S, Goesmann A, Pühler A, et al. (In Press)
Journal of Biotechnology 155(1): 20-33.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003276
Comparative and Joint Analysis of Two Metagenomic Datasets from a Biogas Fermenter Obtained by 454-Pyrosequencing
Jaenicke S, Ander C, Bekel T, Bisdorf R, Dröge M, Gartemann K-H, Jünemann S, Kaiser O, Krause L, Tille F, Zakrzewski M, et al. (2011)
PLoS ONE 6(1): e14519.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2087955
Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Höner zu Siederdissen C, Bort JAH, Wieser M, Kunert R, et al. (2011)
Journal of Biotechnology 153(1-2): 62-75.
PUB | DOI | WoS | PubMed | Europe PMC
 

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