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264 Publikationen

2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2396576
Becker, J., Hackel, M., Jakobi, T., Rupp, O., Schneider, J., Szczepanowski, R., Bekel, T., Borth, N., Goesmann, A., Grillari, J., Kaltschmidt, C., Noll, T., Pühler, A., Tauch, A. & Brinkrolf, K. (2011). Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Journal of Biotechnology, 156(3), 227-235. Elsevier BV. doi:10.1016/j.jbiotec.2011.09.014.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375645
Barzantny, H., Brune, I. & Tauch, A. (2011). Molecular basis of human body odour formation: insights deduced from corynebacterial genome sequences. International Journal of Cosmetic Science, 34(1), 2-11. Wiley-Blackwell. doi:10.1111/j.1468-2494.2011.00669.x.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326445
Schneider, J., Blom, J., Jaenicke, S., Linke, B., Brinkrolf, K., Neuweger, H., Tauch, A. & Goesmann, A. (2011). RAPYD - Rapid Annotation Platform for Yeast Data. Journal of Biotechnology, 155(1), 118-126. Elsevier BV. doi:10.1016/j.jbiotec.2010.10.076.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326518
Szczepanowski, R., Eikmeyer, F.G., Harfmann, J., Blom, J., Rogers, L.M., Top, E.M. & Schlüter, A. (2011). Sequencing and comparative analysis of IncP-1 alpha antibiotic resistance plasmids reveal a highly conserved backbone and differences within accessory regions. Journal of Biotechnology, 155(1), 95-103. Elsevier BV. doi:10.1016/j.jbiotec.2010.11.018.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2454721
Cerdeira, L.T., Cruz Schneider, M.P., Pinto, A.C., de Almeida, S.S., dos Santos, A.R., Vieira Barbosa, E.G., Ali, A., Aburjaile, F.F., Carvalho de Abreu, V.A., Guimaraes, L.C., Soares, S. de C., Dorella, F.A., Rocha, F.S., Bol, E., Caracciolo Gomes de Sa, P.H., Lopes, T.S., Barbosa, M.S., Carneiro, A.R., Juca Ramos, R.T., da Rocha Coimbra, N.A., Jeronimo Lima, A.R., Barh, D., Jain, N., Tiwari, S., Raja, R., Zambare, V., Ghosh, P., Trost, E., Tauch, A., Miyoshi, A., Azevedo, V. & Silva, A. (2011). Complete Genome Sequence of Corynebacterium pseudotuberculosis Strain CIP 52.97, Isolated from a Horse in Kenya. Journal of Bacteriology, 193(24), 7025-7026. American Society for Microbiology. doi:10.1128/JB.06293-11.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2453768
Becker, J., Timmermann, C., Jakobi, T., Rupp, O., Szczepanowski, R., Hackl, M., Goesmann, A., Tauch, A., Borth, N., Grillari, J., Pühler, A., Noll, T. & Brinkrolf, K. (2011). Next-generation sequencing of the CHO cell transcriptome (BMC Proceedings). (H. Hauser, Hrsg.), 5(Suppl. 8), P6. Gehalten auf der 22nd European Society for Animal Cell Technology (ESACT) Meeting on Cell Based Technologies, BioMed Central. doi:10.1186/1753-6561-5-S8-P6.
PUB | DOI
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2404874
Schatschneider, S., Vorhölter, F.-J., Rückert, C., Becker, A., Eisenreich, W., Pühler, A. & Niehaus, K. (2011). Genome-enabled determination of amino acid biosynthesis in Xanthomonas campestris pv. campestris and identification of biosynthetic pathways for alanine, glycine, and isoleucine by 13C-isotopologue profiling. Molecular Genetics and Genomics, 286(3-4), 247-259. Springer Science + Business Media. doi:10.1007/s00438-011-0639-7.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2447751
Jaenicke, S., Zakrzewski, M., Jünemann, S., Pühler, A., Goesmann, A. & Schlüter, A. (2011). Analysis of the Metagenome from a Biogas-Producing Microbial Community by Means of Bioinformatics Methods. In F.J. de Bruijn (Hrsg.), Handbook of Molecular Microbial Ecology II: Metagenomics in Different Habitats (S. 403-414). Wiley-Blackwell. doi:10.1002/9781118010549.ch39.
PUB | DOI
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289952
Blom, J., Jakobi, T., Doppmeier, D., Jaenicke, S., Kalinowski, J., Stoye, J. & Goesmann, A. (2011). Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming. Bioinformatics, 27(10), 1351-1358. Oxford University Press (OUP). doi:10.1093/bioinformatics/btr151.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289971
Ruiz, J.C., D'Afonseca, V., Silva, A., Ali, A., Pinto, A.C., Santos, A.R., Rocha, A.A.M.C., Lopes, D.O., Dorella, F.A., Pacheco, L.G.C., Costa, M.P., Turk, M.Z., Seyffert, N., Moraes, P.M.R.O., Soares, S.C., Almeida, S.S., Castro, T.L.P., Abreu, V.A.C., Trost, E., Baumbach, J., Tauch, A., Schneider, M.P.C., McCulloch, J., Cerdeira, L.T., Ramos, R.T.J., Zerlotini, A., Dominitini, A., Resende, D.M., Coser, E.M., Oliveira, L.M., Pedrosa, A.L., Vieira, C.U., Guimaraes, C.T., Bartholomeu, D.C., Oliveira, D.M., Santos, F.R., Rabelo, E.M., Lobo, F.P., Franco, G.R., Costa, A.F., Castro, I.M., Costa Dias, S.R., Ferro, J.A., Ortega, J.M., Paiva, L.V., Goulart, L.R., Almeida, J.F., Ferro, M.I.T., Carneiro, N.P., Falcao, P.R.K., Grynberg, P., Teixeira, S.M.R., Brommonschenkel, S., Oliveira, S.C., Meyer, R., Moore, R.J., Miyoshi, A., Oliveira, G.C. & Azevedo, V. (2011). Evidence for Reductive Genome Evolution and Lateral Acquisition of Virulence Functions in Two Corynebacterium pseudotuberculosis Strains. PLoS ONE, 6(4): e18551. Public Library of Science (PLoS). doi:10.1371/journal.pone.0018551.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2323705
Langenkämper, D., Kölling, J., Abouna, S., Khan, M., Niehaus, K. & Nattkemper, T.W. (2011). TICAL - a web-tool for multivariate image clustering and data topology preserving visualization. Gehalten auf der Microscopic Image Analysis with Applications in Biology (MIAAB).
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2411181
Cerdeira, L.T., Pinto, A.C., Schneider, M.P.C., de Almeida, S.S., Dos Santos, A.R., Barbosa, E.G.V., Ali, A., Barbosa, M.S., Carneiro, A.R., Ramos, R.T.J., de Oliveira, R.S., Barh, D., Barve, N., Zambare, V., Belchior, S.E., Guimaraes, L.C., de Castro Soares, S., Dorella, F.A., Rocha, F.S., de Abreu, V.A.C., Tauch, A., Trost, E., Miyoshi, A., Azevedo, V. & Silva, A. (2011). Whole-Genome Sequence of Corynebacterium pseudotuberculosis PAT10 Strain Isolated from Sheep in Patagonia, Argentina. Journal of Bacteriology, 193(22), 6420-6421. American Society for Microbiology. doi:10.1128/JB.06044-11.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Im Druck | PUB-ID: 2017892
Schneiker-Bekel, S., Wibberg, D., Bekel, T., Blom, J., Linke, B., Neuweger, H., Stiens, M., Vorhölter, F.-J., Weidner, S., Goesmann, A., Pühler, A. & Schlüter, A. (In Press). The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome. Journal of Biotechnology, 155(1), 20-33. Elsevier BV. doi:10.1016/j.jbiotec.2010.12.018.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003276
Jaenicke, S., Ander, C., Bekel, T., Bisdorf, R., Dröge, M., Gartemann, K.-H., Jünemann, S., Kaiser, O., Krause, L., Tille, F., Zakrzewski, M., Pühler, A., Schlüter, A. & Goesmann, A. (2011). Comparative and Joint Analysis of Two Metagenomic Datasets from a Biogas Fermenter Obtained by 454-Pyrosequencing. PLoS ONE, 6(1), e14519. Public Library of Science (PLoS). doi:10.1371/journal.pone.0014519.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2087955
Hackl, M., Jakobi, T., Blom, J., Doppmeier, D., Brinkrolf, K., Szczepanowski, R., Bernhart, S.H., Höner zu Siederdissen, C., Bort, J.A.H., Wieser, M., Kunert, R., Jeffs, S., Hofacker, I.L., Goesmann, A., Pühler, A., Borth, N. & Grillari, J. (2011). Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering. Journal of Biotechnology, 153(1-2), 62-75. Elsevier BV. doi:10.1016/j.jbiotec.2011.02.011.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1968054
Silva, A., Schneider, M.P.C., Cerdeira, L., Barbosa, M.S., Ramos, R.T.J., Carneiro, A.R., Santos, R., Lima, M., D'Afonseca, V., Almeida, S.S., Santos, A.R., Soares, S.C., Pinto, A.C., Ali, A., Dorella, F.A., Rocha, F., Carvalho de Abreu, V.A., Trost, E., Tauch, A., Shpigel, N., Miyoshi, A. & Azevedo, V. (2011). Complete Genome Sequence of Corynebacterium pseudotuberculosis I19, a Strain Isolated from a Cow in Israel with Bovine Mastitis. Journal of Bacteriology, 193(1), 323-324. American Society for Microbiology. doi:10.1128/JB.01211-10.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003180
Brune, I., Barzantny, H., Kloetzel, M., Jones, J., James, G. & Tauch, A. (2011). Identification of McbR as transcription regulator of aecD and genes involved in methionine and cysteine biosynthesis in Corynebacterium jeikeium K411. Journal of Biotechnology, 151(1), 22-29. Elsevier BV. doi:10.1016/j.jbiotec.2010.11.005.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929692
Schneider, J., Vorhölter, F.-J., Trost, E., Blom, J., Musa, Y.R., Neuweger, H., Niehaus, K., Schatschneider, S., Tauch, A. & Goesmann, A. (2010). CARMEN - Comparative Analysis and in silico Reconstruction of organism-specific MEtabolic Networks. Genetics and Molecular Research, 9(3), 1660-1672. Genetics and Molecular Research. doi:10.4238/vol9-3gmr901.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1966439
Trost, E., Ott, L., Schneider, J., Schröder, J., Jaenicke, S., Goesmann, A., Husemann, P., Stoye, J., Alves Dorella, F., Souza Rocha, F., de Castro Soares, S., D'Afonseca, V., Miyoshi, A., Ruiz, J., Silva, A., Azevedo, V., Burkovski, A., Guiso, N., Join-Lambert, O.F., Kayal, S. & Tauch, A. (2010). The complete genome sequence of Corynebacterium pseudotuberculosis FRC41 isolated from a 12-year-old girl with necrotizing lymphadenitis reveals insights into gene-regulatory networks contributing to virulence. BMC Genomics, 11(1): 728. Springer Science + Business Media. doi:10.1186/1471-2164-11-728.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785275
Trost, E., Götker, S., Schneider, J., Schneiker-Bekel, S., Szczepanowski, R., Tilker, A., Viehöver, P., Arnold, W., Bekel, T., Blom, J., Gartemann, K.-H., Linke, B., Goesmann, A., Pühler, A., Shukla, S.K. & Tauch, A. (2010). Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortion. BMC Genomics, 11(1): 91. Springer Science + Business Media. doi:10.1186/1471-2164-11-91.
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