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265 Publikationen

2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901243
Wendler, S., Otto, A., Ortseifen, V., Bonn, F., Neshat, A., Schneiker-Bekel, S., Wolf, T., et al. (2016). Comparative proteome analysis of Actinoplanes sp SE50/110 grown with maltose or glucose shows Minor differences for acarbose biosynthesis proteins but major differences for saccharide transporters. Journal of Proteomics, 131, 140-148. doi:10.1016/j.jprot.2015.10.023
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901808
Alkhateeb, R., Vorhölter, F. - J., Rückert, C., Mentz, A., Wibberg, D., Hublik, G., Niehaus, K., et al. (2016). Genome wide transcription start sites analysis of the Xanthomonas campestris pv. campestris B100 with insights into the gum gene cluster directing the biosynthesis of the exopolysaccharide xanthan. J Biotechnol, 225, 18-28. doi:10.1016/j.jbiotec.2016.03.020
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2902089
Lauersen, K. J., Willamme, R., Coosemans, N., Joris, M., Kruse, O., & Remacle, C. (2016). Peroxisomal microbodies are at the crossroads of acetate assimilation in the green microalga Chlamydomonas reinhardtii. Algal Research, 16, 266-274. doi:10.1016/j.algal.2016.03.026
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905993
Giampa, M., Lissel, M., Patschkowski, T., Fuchser, J., Hans, V. H., Gembruch, O., Bednarz, H., et al. (2016). Maleic anhydride proton sponge as a novel MALDI matrix for the visualization of small molecules (< 250 m/z) in brain tumors by routine MALDI ToF imaging mass spectrometry. Chemical Communications, 52(63), 9801-9804. doi:10.1039/c6cc02387h
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905260
Maus, I., Koeck, D. E., Cibis, K. G., Hahnke, S., Kim, Y. S., Langer, T., Kreubel, J., et al. (2016). Unraveling the microbiome of a thermophilic biogas plant by metagenome and metatranscriptome analysis complemented by characterization of bacterial and archaeal isolates. Biotechnology for Biofuels, 9(1), 171. doi:10.1186/s13068-016-0581-3
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2906720
Nguyen, T. V., Wibberg, D., Battenberg, K., Blom, J., Vanden Heuvel, B., Berry, A. M., Kalinowski, J., et al. (2016). An assemblage of Frankia Cluster II strains from California contains the canonical nod genes and also the sulfotransferase gene nodH. BMC Genomics, 17, 796. doi:10.1186/s12864-016-3140-1
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905504
Kröber, M., Verwaaijen, B., Wibberg, D., Winkler, A., Pühler, A., & Schlüter, A. (2016). Comparative transcriptome analysis of the biocontrol strain Bacillus amyloliquefaciens FZB42 as response to biofilm formation analyzed by RNA sequencing. Journal of Biotechnology, 231, 212-223. doi:10.1016/j.jbiotec.2016.06.013
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905629
Tomazetto, G., Hahnke, S., Koeck, D. E., Wibberg, D., Maus, I., Pühler, A., Klocke, M., et al. (2016). Complete genome analysis of Clostridium bornimense strain M2/40(T). A new acidogenic Clostridium species isolated from a mesophilic two-phase laboratory-scale biogas reactor. Journal of Biotechnology, 232, 38-49. doi:10.1016/j.jbiotec.2015.08.001
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905631
Leßmeier, L., Alkhateeb, R., Schulte, F., Steffens, T., Loka, T. P., Pühler, A., Niehaus, K., et al. (2016). Applying DNA affinity chromatography to specifically screen for sucrose-related DNA-binding transcriptional regulators of Xanthomonas campestris. Journal of Biotechnology, 232, 89-98. doi:10.1016/j.jbiotec.2016.04.007
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904234
Ortseifen, V., Stolze, Y., Maus, I., Sczyrba, A., Bremges, A., Albaum, S., Jaenicke, S., et al. (2016). An integrated metagenome and -proteome analysis of the microbial community residing in a biogas production plant. Journal of Biotechnology, 231, 268-279. doi:10.1016/j.jbiotec.2016.06.014
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904474
Perez, F., Vasco-Cardenas, M. F., & Barreiro, C. (2016). Biotypes analysis of Corynebacterium glutamicum growing in dicarboxylic acids demonstrates the existence of industrially-relevant intra-species variations. Journal of Proteomics, 146, 172-183. doi:10.1016/j.jprot.2016.06.030
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2016 | Patent | PUB-ID: 2907839
Jorge, J., & Wendisch, V. F. (28.06.2016). Biological preparation of 5-aminovalerate
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907079
Wippermann, A., Rupp, O., Brinkrolf, K., Hoffrogge, R., & Noll, T. (2016). Integrative analysis of DNA methylation and gene expression in butyrate-treated CHO cells. Journal of Biotechnology, 257, 150-161. doi:10.1016/j.jbiotec.2016.11.020
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2761035
Arnold, M., Wibberg, D., Blom, J., Schatschneider, S., Winkler, A., Kutter, Y., Rückert, C., et al. (2015). Draft Genome Sequence of Pseudomonas aeruginosa Strain WS136, a Highly Cytotoxic ExoS-Positive Wound Isolate Recovered from Pyoderma Gangrenosum. Genome announcements, 3(4). doi:10.1128/genomeA.00680-15
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2785064
Krahn, T., Wibberg, D., Maus, I., Winkler, A., Nordmann, P., Pühler, A., Poirel, L., et al. (2015). Complete Genome Sequence of the Clinical Strain Acinetobacter baumannii R2090 Carrying the Chromosomally Encoded Metallo-β-Lactamase GeneblaNDM-1. Genome Announcements, 3(5), e01008-15. doi:10.1128/genomeA.01008-15
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2015 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2702877
Leßmeier, L., Zahoor ul Hassan, A., Lindner, S., & Wendisch, V. F. (2015). Metabolic Engineering of *Corynebacterium glutamicum* for Alternative Carbon Source Utilization. In A. Burkovski (Ed.), *Corynebacterium glutamicum*: From Systems Biology to Biotechnological Applications (pp. 57-70). Caister Academic Press. doi:10.21775/9781910190050.05
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758144
Wibberg, D., Rupp, O., Jelonek, L., Kröber, M., Verwaaijen, B., Blom, J., Winkler, A., et al. (2015). Improved genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 as established by deep mate-pair sequencing on the MiSeq (Illumina) system. Journal of Biotechnology, 203, 19-21. doi:10.1016/j.jbiotec.2015.03.005
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2722138
Kessler, N., Bonte, A., Albaum, S., Mäder, P., Messmer, M., Goesmann, A., Niehaus, K., et al. (2015). Learning to classify organic and conventional wheat - a machine-learning driven approach using the MeltDB 2.0 metabolomics analysis platform. Frontiers in Bioinformatics and Computational Biology, 3, 35. doi:10.3389/fbioe.2015.00035
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2753011
Lauersen, K. J., Huber, I., Wichmann, J., Baier, T., Leiter, A., Gaukel, V., Kartushin, V., et al. (2015). Investigating the dynamics of recombinant protein secretion from a microalgal host. Journal of Biotechnology, 215, 62-71. doi:10.1016/j.jbiotec.2015.05.001
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2712315
Lauersen, K. J., Kruse, O., & Mussgnug, J. H. (2015). Targeted expression of nuclear transgenes in Chlamydomonas reinhardtii with a versatile, modular vector toolkit. Applied Microbiology and Biotechnology, 99(8), 3491-3503. doi:10.1007/s00253-014-6354-7
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901297
Wibberg, D., Rupp, O., Blom, J., Jelonek, L., Kröber, M., Verwaaijen, B., Goesmann, A., et al. (2015). Development of a Rhizoctonia solani AG1-IB Specific Gene Model Enables Comparative Genome Analyses between Phytopathogenic R-solani AG1-IA, AG1-IB, AG3 and AG8 Isolates. Plos One, 10(12), e0144769. doi:10.1371/journal.pone.0144769
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2729771
Nguyen, A. Q., Komati Reddy, G., Schneider, J., & Wendisch, V. F. (2015). Fermentative production of the diamine putrescine: systems metabolic engineering of *Corynebacterium glutamicum*. Metabolites, 5, 211-231. doi:10.3390/metabo5020211
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2768627
Eikmeyer, F. G., Heinl, S., Marx, H., Pühler, A., Grabherr, R., & Schlüter, A. (2015). Identification of Oxygen-Responsive Transcripts in the Silage Inoculant Lactobacillus buchneri CD034 by RNA Sequencing. PLoS ONE, 10(7), e0134149. doi:10.1371/journal.pone.0134149
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2777468
Freudenau, I., Lutter, P., Baier, R., Schleef, M., Bednarz, H., Lara, A. R., & Niehaus, K. (2015). ColE1-Plasmid Production in Escherichia coli: Mathematical Simulation and Experimental Validation. Frontiers in Bioengineering and Biotechnology, 3, 127. doi:10.3389/fbioe.2015.00127
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2775617
Stadermann, K. B., Weisshaar, B., & Holtgräwe, D. (2015). SMRT sequencing only de novo assembly of the sugar beet (Beta vulgaris) chloroplast genome. BMC Bioinformatics, 16, 295. doi:10.1186/s12859-015-0726-6
PUB | PDF | DOI | WoS | PubMed | Europe PMC | GenBank
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764906
Bremges, A., Maus, I., Belmann, P., Eikmeyer, F. G., Winkler, A., Albersmeier, A., Pühler, A., et al. (2015). Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant. GigaScience, 4(1), 33. doi:10.1186/s13742-015-0073-6
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900198
Nolla Ardevol, V., Peces, M., Strous, M., & Tegetmeyer, H. (2015). Metagenome from a Spirulina digesting biogas reactor: analysis via binning of contigs and classification of short reads. BMC Microbiology, 15, 277. doi:10.1186/s12866-015-0615-1
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2706344
Irla, M., Neshat, A., Brautaset, T., Rückert, C., Kalinowski, J., & Wendisch, V. F. (2015). Transcriptome analysis of thermophilic methylotrophic *Bacillus methanolicus* MGA3 using RNA-sequencing provides detailed insights into its previously uncharted transcriptional landscape. BMC Genomics, 16, 73. doi:10.1186/s12864-015-1239-4
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2760033
Nolla Ardevol, V., Strous, M., & Tegetmeyer, H. (2015). Anaerobic digestion of the microalga Spirulina at extreme alkaline conditions: biogas production, metagenome, and metatranscriptome. Frontiers in Microbiology, 6, 597. doi:10.3389/fmicb.2015.00597
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2722382
Stolze, Y., Zakrzewski, M., Maus, I., Eikmeyer, F. G., Jaenicke, S., Rottmann, N., Siebner, C., et al. (2015). Comparative metagenomics of biogas-producing microbial communities from production-scale biogas plants operating under wet or dry fermentation conditions. Biotechnology for Biofuels, 8, 14. doi:10.1186/s13068-014-0193-8
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2015 | Dissertation | Veröffentlicht | PUB-ID: 2902942
Walter, F. (2015). Etablierung einer LC-ESI-MS-Plattform und Analyse der Biosynthese von L-Arginin und Gamma-Glutamyl-Dipeptiden in Corynebacterium glutamicum. Bielefeld.
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2015 | Dissertation | Veröffentlicht | PUB-ID: 2901374
Kulis-Horn, R. (2015). Untersuchung der L-Histidinbiosynthese in Corynebacterium glutamicum ATCC 13032 zur Erzeugung eines L-Histidinproduzenten. Bielefeld.
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2015 | Dissertation | Veröffentlicht | PUB-ID: 2901381
Eikmeyer, F. G. (2015). Untersuchung der Rolle von Lactobacillus buchneri CD034 bei der Bildung von Grassilage mittels nukleinsäurebasierter Methoden. Bielefeld.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2762833
Kohrs, F., Wolter, S., Benndorf, D., Heyer, R., Hoffmann, M., Rapp, E., Bremges, A., et al. (2015). Fractionation of biogas plant sludge material improves metaproteomic characterization to investigate metabolic activity of microbial communities. Proteomics, 15(20), 3585-3589. doi:10.1002/pmic.201400557
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2015 | Patent | PUB-ID: 2906692
Kind, S., & Jorge, J. (11.09.2015). Process for preparing terminal amino carboxylic acids and amino aldehydes by means of a recombinant microorganism
PUB
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2733521
Stoeveken, J., Singh, R., Kolkenbrock, S., Zakrzewski, M., Wibberg, D., Eikmeyer, F. G., Pühler, A., et al. (2015). Successful heterologous expression of a novel chitinase identified by sequence analyses of the metagenome from a chitin-enriched soil sample. Journal of Biotechnology, 201, 60-68. doi:10.1016/j.jbiotec.2014.09.010
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2717648
Hahnke, S., Maus, I., Wibberg, D., Geizecler, T., Pühler, A., Klocke, M., & Schlüter, A. (2015). Complete genome sequence of the novel Porphyromonadaceae bacterium strain ING2-E5B isolated from a mesophilic lab-scale biogas reactor. Journal of Biotechnology, 193, 34-36. doi:10.1016/j.jbiotec.2014.11.010
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2709783
Ortseifen, V., Winkler, A., Albersmeier, A., Wendler, S., Pühler, A., Kalinowski, J., & Rückert, C. (2015). Complete Genome Sequence of the Actinobacterium Streptomyces glaucescens GLA.O (DSM 40922) consisting of a linear chromosome and one linear plasmid. Journal of Biotechnology, 194, 81-83. doi:10.1016/j.jbiotec.2014.11.036
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2782501
Belmann, P., Dröge, J., Bremges, A., McHardy, A. C., Sczyrba, A., & Barton, M. D. (2015). Bioboxes: standardised containers for interchangeable bioinformatics software. GigaScience, 4, 47. doi:10.1186/s13742-015-0087-0
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2701466
Nguyen, A. Q., Schneider, J., & Wendisch, V. F. (2015). Elimination of polyamine N-acetylation and regulatory engineering improved putrescine production by *Corynebacterium glutamicum*. Journal of Biotechnology, 201, 75-85. doi:10.1016/j.jbiotec.2014.10.035
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764307
Wendler, S., Otto, A., Ortseifen, V., Bonn, F., Neshat, A., Schneiker-Bekel, S., Walter, F., et al. (2015). Comprehensive proteome analysis of Actinoplanes sp SE50/110 highlighting the location of proteins encoded by the acarbose and the pyochelin biosynthesis gene cluster. Journal of Proteomics, 125, 1-16. doi:10.1016/j.jprot.2015.04.013
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758122
Wibberg, D., Alkhateeb, R., Winkler, A., Albersmeier, A., Schatschneider, S., Albaum, S., Niehaus, K., et al. (2015). Draft genome of the xanthan producer Xanthomonas campestris NRRL B-1459 (ATCC 13951). Journal of Biotechnology, 204, 45-46. doi:10.1016/j.jbiotec.2015.03.026
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758134
Maus, I., Cibis, K. G., Wibberg, D., Winkler, A., Stolze, Y., König, H., Pühler, A., et al. (2015). Complete genome sequence of the strain Defluviitoga tunisiensis L3, isolated from a thermophilic, production-scale biogas plant. Journal of Biotechnology, 203, 17-18. doi:10.1016/j.jbiotec.2015.03.006
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2718773
Wippermann, A., Rupp, O., Brinkrolf, K., Hoffrogge, R., & Noll, T. (2015). The DNA methylation landscape of Chinese hamster ovary (CHO) DP-12 cells. Journal of Biotechnology, 199, 38-46. doi:10.1016/j.jbiotec.2015.01.014
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2733509
Maus, I., Wibberg, D., Stantscheff, R., Stolze, Y., Blom, J., Eikmeyer, F. G., Fracowiak, J., et al. (2015). Insights into the annotated genome sequence of Methanoculleus bourgensis MS2(T), related to dominant methanogens in biogas-producing plants. Journal of Biotechnology, 201, 43-53. doi:10.1016/j.jbiotec.2014.11.020
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2015 | Dissertation | Veröffentlicht | PUB-ID: 2901404
Nguyen, A. Q. (2015). Metabolic engineering for improving putrescine production in C. glutamicum.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901214
Koeck, D. E., Maus, I., Wibberg, D., Winkler, A., Zverlov, V. V., Liebl, W., Pühler, A., et al. (2015). Draft genome sequence of Herbinix hemicellulosilytica T3/55(T), a new thermophilic cellulose degrading bacterium isolated from a thermophilic biogas reactor. Journal of Biotechnology, 214, 59-60. doi:10.1016/j.jbiotec.2015.07.022
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2778477
Dziewit, L., Czarnecki, J., Prochwicz, E., Wibberg, D., Schlüter, A., Pühler, A., & Bartosik, D. (2015). Genome-guided insight into the methylotrophy of Paracoccus aminophilus JCM 7686. Frontiers in Microbiology, 6, 852. doi:10.3389/fmicb.2015.00852
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764185
Schafhauser, T., Wibberg, D., Rückert, C., Winkler, A., Flor, L., van Pée, K. - H., Fewer, D. P., et al. (2015). Draft genome sequence of Talaromyces islandicus ("Penicillium islandicum") WF-38-12, a neglected mold with significant biotechnological potential. Journal of Biotechnology, 211, 101-102. doi:10.1016/j.jbiotec.2015.07.004
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2015 | Dissertation | PUB-ID: 2763163
Wendler, S. (2015). Comprehensive proteome analysis of Actinoplanes sp. SE50/110, the producer of the medically important secondary metabolite acarbose. Bielefeld.
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