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266 Publikationen

2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2317371
Küberl, Andreas, Schneider, Jessica, Thallinger, Gerhard G., Anderl, Ingund, Wibberg, Daniel, Hajek, Tanja, Jaenicke, Sebastian, Brinkrolf, Karina, Goesmann, Alexander, Szczepanowski, Rafael, Pühler, Alfred, Schwab, Helmut, Glieder, Anton, and Pichler, Harald. “High-quality genome sequence of Pichia pastoris CBS7435”. Journal of Biotechnology 154.4 (2011): 312-320.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326465
Torres Tejerizo, Gonzalo, Florencia Del Papa, Maria, Draghi, Walter, Lozano, Mauricio, de los Angeles Giusti, Maria, Martini, Carla, Eugenia Salas, Maria, Salto, Ileana, Wibberg, Daniel, Szczepanowski, Rafael, Weidner, Stefan, Schlüter, Andreas, Lagares, Antonio, and Pistorio, Mariano. “First genomic analysis of the broad-host-range Rhizobium sp LPU83 strain, a member of the low-genetic diversity Oregon-like Rhizobium sp group”. Journal of Biotechnology 155.1 (2011): 3-10.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2396576
Becker, Jennifer, Hackel, M, Jakobi, Tobias, Rupp, Oliver, Schneider, Jessica, Szczepanowski, Rafael, Bekel, Thomas, Borth, N, Goesmann, Alexander, Grillari, J, Kaltschmidt, Christian, Noll, Thomas, Pühler, Alfred, Tauch, Andreas, and Brinkrolf, Karina. “Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing”. Journal of Biotechnology 156.3 (2011): 227-235.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375645
Barzantny, Helena, Brune, Iris, and Tauch, Andreas. “Molecular basis of human body odour formation: insights deduced from corynebacterial genome sequences”. International Journal of Cosmetic Science 34.1 (2011): 2-11.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326445
Schneider, Jessica, Blom, Jochen, Jaenicke, Sebastian, Linke, Burkhard, Brinkrolf, Karina, Neuweger, Heiko, Tauch, Andreas, and Goesmann, Alexander. “RAPYD - Rapid Annotation Platform for Yeast Data”. Journal of Biotechnology 155.1 (2011): 118-126.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326518
Szczepanowski, Rafael, Eikmeyer, Felix Gregor, Harfmann, Jannis, Blom, Jochen, Rogers, Linda M., Top, Eva M., and Schlüter, Andreas. “Sequencing and comparative analysis of IncP-1 alpha antibiotic resistance plasmids reveal a highly conserved backbone and differences within accessory regions”. Journal of Biotechnology 155.1 (2011): 95-103.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2454721
Cerdeira, Louise Teixeira, Cruz Schneider, Maria Paula, Pinto, Anne Cybelle, de Almeida, Sintia Silva, dos Santos, Anderson Rodrigues, Vieira Barbosa, Eudes Guilherme, Ali, Amjad, Aburjaile, Flavia Figueira, Carvalho de Abreu, Vinicius Augusto, Guimaraes, Luis Carlos, Soares, Siomar de Castro, Dorella, Fernanda Alves, Rocha, Flavia Souza, Bol, Erick, Caracciolo Gomes de Sa, Pablo Henrique, Lopes, Thiago Souza, Barbosa, Maria Silvanira, Carneiro, Adriana Ribeiro, Juca Ramos, Rommel Thiago, da Rocha Coimbra, Nilson Antonio, Jeronimo Lima, Alex Ranieri, Barh, Debmalya, Jain, Neha, Tiwari, Sandeep, Raja, Rathiram, Zambare, Vasudeo, Ghosh, Preetam, Trost, Eva, Tauch, Andreas, Miyoshi, Anderson, Azevedo, Vasco, and Silva, Artur. “Complete Genome Sequence of Corynebacterium pseudotuberculosis Strain CIP 52.97, Isolated from a Horse in Kenya”. Journal of Bacteriology 193.24 (2011): 7025-7026.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2453768
Becker, Jennifer, Timmermann, Christina, Jakobi, Tobias, Rupp, Oliver, Szczepanowski, Rafael, Hackl, Matthias, Goesmann, Alexander, Tauch, Andreas, Borth, Nicole, Grillari, Johannes, Pühler, Alfred, Noll, Thomas, and Brinkrolf, Karina. “Next-generation sequencing of the CHO cell transcriptome”. BMC Proceedings 5.Suppl. 8 (2011): P6.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2404874
Schatschneider, Sarah, Vorhölter, Frank-Jörg, Rückert, Christian, Becker, Anke, Eisenreich, Wolfgang, Pühler, Alfred, and Niehaus, Karsten. “Genome-enabled determination of amino acid biosynthesis in Xanthomonas campestris pv. campestris and identification of biosynthetic pathways for alanine, glycine, and isoleucine by 13C-isotopologue profiling”. Molecular Genetics and Genomics 286.3-4 (2011): 247-259.
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2011 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2447751
Jaenicke, Sebastian, Zakrzewski, Martha, Jünemann, Sebastian, Pühler, Alfred, Goesmann, Alexander, and Schlüter, Andreas. “Analysis of the Metagenome from a Biogas-Producing Microbial Community by Means of Bioinformatics Methods”. Handbook of Molecular Microbial Ecology II: Metagenomics in Different Habitats. Ed. Frans J. de Bruijn. Wiley-Blackwell, 2011. 403-414.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289952
Blom, Jochen, Jakobi, Tobias, Doppmeier, Daniel, Jaenicke, Sebastian, Kalinowski, Jörn, Stoye, Jens, and Goesmann, Alexander. “Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming”. Bioinformatics 27.10 (2011): 1351-1358.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289971
Ruiz, Jeronimo C., D'Afonseca, Vivian, Silva, Artur, Ali, Amjad, Pinto, Anne C., Santos, Anderson R., Rocha, Aryanne A. M. C., Lopes, Debora O., Dorella, Fernanda A., Pacheco, Luis G. C., Costa, Marcilia P., Turk, Meritxell Z., Seyffert, Nubia, Moraes, Pablo M. R. O., Soares, Siomar C., Almeida, Sintia S., Castro, Thiago L. P., Abreu, Vinicius A. C., Trost, Eva, Baumbach, Jan, Tauch, Andreas, Schneider, Maria Paula C., McCulloch, John, Cerdeira, Louise T., Ramos, Rommel T. J., Zerlotini, Adhemar, Dominitini, Anderson, Resende, Daniela M., Coser, Elisangela M., Oliveira, Luciana M., Pedrosa, Andre L., Vieira, Carlos U., Guimaraes, Claudia T., Bartholomeu, Daniela C., Oliveira, Diana M., Santos, Fabricio R., Rabelo, Elida Mara, Lobo, Francisco P., Franco, Gloria R., Costa, Ana Flavia, Castro, Ieso M., Costa Dias, Silvia Regina, Ferro, Jesus A., Ortega, Jose Miguel, Paiva, Luciano V., Goulart, Luiz R., Almeida, Juliana Franco, Ferro, Maria Ines T., Carneiro, Newton P., Falcao, Paula R. K., Grynberg, Priscila, Teixeira, Santuza M. R., Brommonschenkel, Sergio, Oliveira, Sergio C., Meyer, Roberto, Moore, Robert J., Miyoshi, Anderson, Oliveira, Guilherme C., and Azevedo, Vasco. “Evidence for Reductive Genome Evolution and Lateral Acquisition of Virulence Functions in Two Corynebacterium pseudotuberculosis Strains”. PLoS ONE 6.4 (2011): e18551.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2323705 OA
Langenkämper, Daniel, Kölling, Jan, Abouna, Sylvie, Khan, Michael, Niehaus, Karsten, and Nattkemper, Tim Wilhelm. “TICAL - a web-tool for multivariate image clustering and data topology preserving visualization”. Presented at the Microscopic Image Analysis with Applications in Biology (MIAAB), Heidelberg, Germany, 2011.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2411181
Cerdeira, Louise Teixeira, Pinto, Anne Cybelle, Schneider, Maria Paula Cruz, de Almeida, Sintia Silva, Dos Santos, Anderson Rodrigues, Barbosa, Eudes Guilherme Vieira, Ali, Amjad, Barbosa, Maria Silvanira, Carneiro, Adriana Ribeiro, Ramos, Rommel Thiago Juca, de Oliveira, Rodrigo Santos, Barh, Debmalya, Barve, Neha, Zambare, Vasudeo, Belchior, Silvia Estevao, Guimaraes, Luis Carlos, de Castro Soares, Siomar, Dorella, Fernanda Alves, Rocha, Flavia Souza, de Abreu, Vinicius Augusto Carvalho, Tauch, Andreas, Trost, Eva, Miyoshi, Anderson, Azevedo, Vasco, and Silva, Artur. “Whole-Genome Sequence of Corynebacterium pseudotuberculosis PAT10 Strain Isolated from Sheep in Patagonia, Argentina”. Journal of Bacteriology 193.22 (2011): 6420-6421.
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2011 | Zeitschriftenaufsatz | Im Druck | PUB-ID: 2017892
Schneiker-Bekel, Susanne, Wibberg, Daniel, Bekel, Thomas, Blom, Jochen, Linke, Burkhard, Neuweger, Heiko, Stiens, Michael, Vorhölter, Frank-Jörg, Weidner, Stefan, Goesmann, Alexander, Pühler, Alfred, and Schlüter, Andreas. “The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome”. Journal of Biotechnology 155.1 (In Press): 20-33.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003276
Jaenicke, Sebastian, Ander, Christina, Bekel, Thomas, Bisdorf, Regina, Dröge, Marcus, Gartemann, Karl-Heinz, Jünemann, Sebastian, Kaiser, Olaf, Krause, Lutz, Tille, Felix, Zakrzewski, Martha, Pühler, Alfred, Schlüter, Andreas, and Goesmann, Alexander. “Comparative and Joint Analysis of Two Metagenomic Datasets from a Biogas Fermenter Obtained by 454-Pyrosequencing”. PLoS ONE 6.1 (2011): e14519.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2087955
Hackl, Matthias, Jakobi, Tobias, Blom, Jochen, Doppmeier, Daniel, Brinkrolf, Karina, Szczepanowski, Rafael, Bernhart, Stephan H, Höner zu Siederdissen, Christian, Bort, Juan A Hernandez, Wieser, Matthias, Kunert, Renate, Jeffs, Simon, Hofacker, Ivo L., Goesmann, Alexander, Pühler, Alfred, Borth, Nicole, and Grillari, Johannes. “Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering”. Journal of Biotechnology 153.1-2 (2011): 62-75.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1968054
Silva, Artur, Schneider, Maria Paula C., Cerdeira, Louise, Barbosa, Maria Silvanira, Ramos, Rommel Thiago J., Carneiro, Adriana R., Santos, Rodrigo, Lima, Marilia, D'Afonseca, Vivian, Almeida, Sintia S., Santos, Anderson R., Soares, Siomar C., Pinto, Anne C., Ali, Amjad, Dorella, Fernanda A., Rocha, Flavia, Carvalho de Abreu, Vinicius Augusto, Trost, Eva, Tauch, Andreas, Shpigel, Nahum, Miyoshi, Anderson, and Azevedo, Vasco. “Complete Genome Sequence of Corynebacterium pseudotuberculosis I19, a Strain Isolated from a Cow in Israel with Bovine Mastitis”. Journal of Bacteriology 193.1 (2011): 323-324.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003180
Brune, Iris, Barzantny, Helena, Kloetzel, Marianne, Jones, Janette, James, Gordon, and Tauch, Andreas. “Identification of McbR as transcription regulator of aecD and genes involved in methionine and cysteine biosynthesis in Corynebacterium jeikeium K411”. Journal of Biotechnology 151.1 (2011): 22-29.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929692
Schneider, Jessica, Vorhölter, Frank-Jörg, Trost, Eva, Blom, Jochen, Musa, Y. R., Neuweger, Heiko, Niehaus, Karsten, Schatschneider, Sarah, Tauch, Andreas, and Goesmann, Alexander. “CARMEN - Comparative Analysis and in silico Reconstruction of organism-specific MEtabolic Networks”. Genetics and Molecular Research 9.3 (2010): 1660-1672.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1966439
Trost, Eva, Ott, Lisa, Schneider, Jessica, Schröder, Jasmin, Jaenicke, Sebastian, Goesmann, Alexander, Husemann, Peter, Stoye, Jens, Alves Dorella, Fernanda, Souza Rocha, Flavia, de Castro Soares, Siomar, D'Afonseca, Vivian, Miyoshi, Anderson, Ruiz, Jeronimo, Silva, Artur, Azevedo, Vasco, Burkovski, Andreas, Guiso, Nicole, Join-Lambert, Olivier F., Kayal, Samer, and Tauch, Andreas. “The complete genome sequence of Corynebacterium pseudotuberculosis FRC41 isolated from a 12-year-old girl with necrotizing lymphadenitis reveals insights into gene-regulatory networks contributing to virulence”. BMC Genomics 11.1 (2010): 728.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785275 OA
Trost, Eva, Götker, Susanne, Schneider, Jessica, Schneiker-Bekel, Susanne, Szczepanowski, Rafael, Tilker, Alexandra, Viehöver, Prisca, Arnold, Walter, Bekel, Thomas, Blom, Jochen, Gartemann, Karl-Heinz, Linke, Burkhard, Goesmann, Alexander, Pühler, Alfred, Shukla, Sanjay K., and Tauch, Andreas. “Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortion”. BMC Genomics 11.1 (2010): 91.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2397394
Goesmann, Alexander, Schneider, Jessica, Trost, Eva, and Tauch, Andreas. “Entschlüsselung mikrobieller Genomsequenzen im Schnellverfahren”. BIOspektrum 15.3 (2009): 279-281.
PUB
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783187 OA
Blom, Jochen, Albaum, Stefan, Doppmeier, Daniel, Pühler, Alfred, Vorhölter, Frank-Jörg, Zakrzewski, Martha, and Goesmann, Alexander. “EDGAR: a software framework for the comparative analysis of prokaryotic genomes”. BMC Bioinformatics 10.1 (2009): 154.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635300 OA
Henckel, Kolja, Runte, Kai J., Bekel, Thomas, Dondrup, Michael, Jakobi, Tobias, Küster, Helge, and Goesmann, Alexander. “TRUNCATULIX - a data warehouse for the legume community”. BMC Plant Biology 9.1 (2009): 19.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634447
Bekel, Thomas, Henckel, Kolja, Küster, Helge, Meyer, Folker, Mittard-Runte, Virginie, Neuweger, Heiko, Paarmann, Daniel, Rupp, Oliver, Zakrzewski, Martha, Pühler, Alfred, Stoye, Jens, and Goesmann, Alexander. “The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies”. Journal of Biotechnology 140.1-2 (2009): 3-12.
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