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265 Publikationen

2012 | Dissertation | PUB-ID: 2541645
Trost, E. (2012). Das bakterielle Pangenom: komparative Genomanalysen zur Identifizierung neuer Virulenzfaktoren des Corynebacterium diphtheriae-Clusters. Bielefeld.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2351519
Lenger, J., Schröder, M., Ennemann, E., Müller, B., Wong, C. - H., Noll, T., Dierks, T., et al. (2012). Evaluation of sulfatase-directed quinone methide traps for proteomics. Bioorganic & Medical Chemistry, 20(2), 622-627. doi:10.1016/j.bmc.2011.04.044
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2477132
Soares, S. C., Abreu, V. A. C., Ramos, R. T. J., Cerdeira, L., Silva, A., Baumbach, J., Trost, E., et al. (2012). PIPS: Pathogenicity Island Prediction Software. PLoS ONE, 7(2), e30848. doi:10.1371/journal.pone.0030848
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2484618
Zakrzewski, M., Goesmann, A., Jaenicke, S., Jünemann, S., Eikmeyer, F. G., Szczepanowski, R., Al-Soud, W. A., et al. (2012). Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing. Journal of Biotechnology, 158(4), 248-258. doi:10.1016/j.jbiotec.2012.01.020
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2513347
Trost, E., Blom, J., de Castro Soares, S., Huang, I. - H., Al-Dilaimi, A., Schröder, J., Jaenicke, S., et al. (2012). Pangenomic Study of Corynebacterium diphtheriae That Provides Insights into the Genomic Diversity of Pathogenic Isolates from Cases of Classical Diphtheria, Endocarditis, and Pneumonia. Journal of bacteriology, 194(12), 3199-3215. doi:10.1128/JB.00183-12
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2012 | Dissertation | PUB-ID: 2575272
Barzantny, H. (2012). Transkriptionelle Genregulation im lipophilen Hautisolat Corynebacterium jeikeium K411 im Rahmen der Ausprägung des menschlichen Schweißgeruchs. Bielefeld.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2471858
Ausec, L., Zakrzewski, M., Goesmann, A., Schlüter, A., & Mandic-Mulec, I. (2012). Correction: bioinformatic analysis reveals high diversity of bacterial genes for laccase-like enzymes. PLoS ONE, 7(1). doi:10.1371/annotation/2c1232ba-94f0-4613-8486-0f430b1b47ed
PUB | DOI | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2472279
Eikmeyer, F. G., Hadiati, A., Szczepanowski, R., Wibberg, D., Schneiker-Bekel, S., Rogers, L. M., Brown, C. B., et al. (2012). The complete genome sequences of four new IncN plasmids from wastewater treatment plant effluent provide new insights into IncN plasmid diversity and evolution. Plasmid, 68(1), 13-24. doi:10.1016/j.plasmid.2012.01.011
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2536068
Nolla Ardevol, V., Strous, M., Sorokin, D. Y., Merkel, A. Y., & Tegetmeyer, H. (2012). Activity and diversity of haloalkaliphilic methanogens in Central Asian soda lakes. Journal of Biotechnology, 161(2), 167-173. doi:10.1016/j.jbiotec.2012.04.003
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490535
Heinl, S., Wibberg, D., Eikmeyer, F. G., Szczepanowski, R., Blom, J., Linke, B., Goesmann, A., et al. (2012). Insights into the completely annotated genome of Lactobacillus buchneri CD034, a strain isolated from stable grass silage. Journal of Biotechnology, 161(2), 153-166. doi:10.1016/j.jbiotec.2012.03.007
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2471667
Sabbadini, P. S., Assis, M. C., Trost, E., Gomes, D. L. R., Moreira, L. O., Dos Santos, C. S., Pereira, G. A., et al. (2012). Corynebacterium diphtheriae 67-72p hemagglutinin, characterized as the protein DIP0733, contributes to invasion and induction of apoptosis in HEp-2 cells. Microbial Pathogenesis, 52(3), 165-176. doi:10.1016/j.micpath.2011.12.003
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2471681
Rademacher, A., Zakrzewski, M., Schlüter, A., Schonberg, M., Szczepanowski, R., Goesmann, A., Pühler, A., et al. (2012). Characterization of microbial biofilms in a thermophilic biogas system by high-throughput metagenome sequencing. FEMS Microbiology Ecology, 79(3), 785-799. doi:10.1111/j.1574-6941.2011.01265.x
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2486060
Schwientek, P., Szczepanowski, R., Rückert, C., Kalinowski, J., Klein, A., Selber, K., Wehmeier, U. F., et al. (2012). The complete genome sequence of the acarbose producer Actinoplanes sp. SE50/110. BMC Genomics, 13(1), 112. doi:10.1186/1471-2164-13-112
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2012 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2515687
Kölling, J., Rathke, M., Abouna, S., Khan, M., & Nattkemper, T. W. (2012). Analyzing Multi-Tag Bioimages with BIOIMAX colocation mining tools. Presented at the IEEE International Symposium on BIOMEDICAL IMAGING (ISBI), Barcelona.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501364
Meleady, P., Hoffrogge, R., Henry, M., Rupp, O., Bort, J. H., Clarke, C., Brinkrolf, K., et al. (2012). Utilization and evaluation of CHO-specific sequence databases for mass spectrometry based proteomics. Biotechnology and Bioengineering, 109(6), 1386-1394. doi:10.1002/bit.24476
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2474002
Schneider, J., Rupp, O., Trost, E., Jaenicke, S., Passoth, V., Goesmann, A., Tauch, A., et al. (2012). Genome sequence of Wickerhamomyces anomalus DSM 6766 reveals genetic basis of biotechnologically important antimicrobial activities. FEMS Yeast Research, 12(3), 382-386. doi:10.1111/j.1567-1364.2012.00791.x
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2478526
Hackl, M., Jadhav, V., Jakobi, T., Rupp, O., Brinkrolf, K., Goesmann, A., Pühler, A., et al. (2012). Computational identification of microRNA gene loci and precursor microRNA sequences in CHO cell lines. Journal of Biotechnology, 158(3), 151-155. doi:10.1016/j.jbiotec.2012.01.019
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2405255
Persicke, M., Rückert, C., Plassmeier, J., Stutz, L., Kessler, N., Kalinowski, J., Goesmann, A., et al. (2012). MSEA: metabolite set enrichment analysis in the MeltDB metabolomics software platform: metabolic profiling of Corynebacterium glutamicum as an example. Metabolomics, 8(2), 310-322. doi:10.1007/s11306-011-0311-6
PUB | DOI | WoS
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2496829
Cox, A. J., Bauer, M. J., Jakobi, T., & Rosone, G. (2012). Large-scale compression of genomic sequence databases with the Burrows-Wheeler transform. Bioinformatics, 28(11), 1415-1419. doi:10.1093/bioinformatics/bts173
PUB | DOI | WoS | PubMed | Europe PMC | arXiv
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2544774
Schneider, J., Andrea, H., Blom, J., Jaenicke, S., Rückert, C., Schorsch, C., Szczepanowski, R., et al. (2012). Draft Genome Sequence of Wickerhamomyces ciferrii NRRL Y-1031 F-60-10. Eukaryotic Cell, 11(12), 1582-1583. doi:10.1128/EC.00258-12
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2533638
Zahoor ul Hassan, A., Lindner, S., & Wendisch, V. F. (2012). Metabolic engineering of Corynebacterium glutamicum aimed at alternative carbon sources and new products. Computational and Structural Biotechnology Journal, 3(4), e201210004. doi:10.5936/csbj.201210004
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2542210
Parreira, V. R., Costa, M., Eikmeyer, F. G., Blom, J., & Prescott, J. F. (2012). Sequence of Two Plasmids from Clostridium perfringens Chicken Necrotic Enteritis Isolates and Comparison with C. perfringens Conjugative Plasmids. PLoS ONE, 7(11), e49753. doi:10.1371/journal.pone.0049753
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500805
Barzantny, H., Schröder, J., Strotmeier, J., Fredrich, E., Brune, I., & Tauch, A. (2012). The transcriptional regulatory network of Corynebacterium jeikeium K411 and its interaction with metabolic routes contributing to human body odor formation. Journal of biotechnology, 159(3), 235-248. doi:10.1016/j.jbiotec.2012.01.021
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Bielefelder E-Dissertation | PUB-ID: 2533144
Zakrzewski, M. (2012). Development of computational methods for the analysis of metagenome and metatranscriptome data. Bielefeld: Universität Bielefeld.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2530885
Brinkrolf, K., Schneider, J., Knecht, M., Rückert, C., & Tauch, A. (2012). Draft Genome Sequence of Turicella otitidis ATCC 51513, Isolated from Middle Ear Fluid from a Child with Otitis Media. Journal of Bacteriology, 194(21), 5968-5969. doi:10.1128/JB.01412-12
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2518300
Schröder, J., Glaub, A., Schneider, J., Trost, E., & Tauch, A. (2012). Draft genome sequence of Corynebacterium bovis DSM 20582, which causes clinical mastitis in dairy cows. Journal of Bacteriology, 194(16), 4437. doi:10.1128/JB.00839-12
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2521149
La Russa, M., Bogen, C., Uhmeyer, A., Doebbe, A., Filippone, E., Kruse, O., & Mussgnug, J. H. (2012). Functional analysis of three type-2 DGAT homologue genes for triacylglycerol production in the green microalga Chlamydomonas reinhardtii. Journal of Biotechnology, 162(1), 13-20. doi:10.1016/j.jbiotec.2012.04.006
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2481783
Kölling, J., Langenkämper, D., Sylvie, A., Michale, K., & Nattkemper, T. W. (2012). WHIDE - A web tool for visual data mining colocation patterns in multivariate bioimages. Bioinformatics, 28(8), 1143-1150. doi:10.1093/bioinformatics/bts104
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2012 | Bielefelder E-Dissertation | PUB-ID: 2484427
Schwientek, P. (2012). Genomics and transcriptomics of the industrial acarbose producer Actinoplanes sp. SE50/110. Bielefeld: Universität Bielefeld.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2530446
Stolze, Y., Eikmeyer, F. G., Wibberg, D., Brandis, G., Karsten, C., Krahn, I., Schneiker-Bekel, S., et al. (2012). IncP-1 beta plasmids of Comamonas sp and Delftia sp strains isolated from a wastewater treatment plant mediate resistance to and decolorization of the triphenylmethane dye crystal violet. Microbiology, 158(Pt_8), 2060-2072. doi:10.1099/mic.0.059220-0
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2528991
Cox, A. J., Jakobi, T., Rosone, G., & Schulz-Trieglaff, O. B. (2012). Comparing DNA Sequence Collections by Direct Comparison of Compressed Text Indexes. In B. Raphael & J. Tang (Eds.), Lecture Notes in Computer Science: Vol. 7534. Algorithms in Bioinformatics (pp. 214-224). doi:10.1007/978-3-642-33122-0_17
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526298
Maus, I., Wibberg, D., Stantscheff, R., Eikmeyer, F. G., Seffner, A., Boelter, J., Szczepanowski, R., et al. (2012). Complete Genome Sequence of the Hydrogenotrophic, Methanogenic Archaeon Methanoculleus bourgensis Strain MS2T, Isolated from a Sewage Sludge Digester. Journal of Bacteriology, 194(19), 5487-5488. doi:10.1128/JB.01292-12
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501312
Gorzolka, K., Lissel, M., Kessler, N., Loch-Ahring, S., & Niehaus, K. (2012). Metabolite fingerprinting of barley whole seeds, endosperms, and embryos during industrial malting. Journal of Biotechnology, 159(3), 177-187. doi:10.1016/j.jbiotec.2012.03.012
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354752
Trost, E., Al-Dilaimi, A., Papavasiliou, P., Schneider, J., Viehöver, P., Burkovski, A., Soares, S. C., et al. (2011). Comparative analysis of two complete Corynebacterium ulcerans genomes and detection of candidate virulence factors. BMC Genomics, 12(1), 383. doi:10.1186/1471-2164-12-383
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2442587
Schröder, J., Maus, I., Trost, E., & Tauch, A. (2011). Complete genome sequence of Corynebacterium variabile DSM 44702 isolated from the surface of smear-ripened cheeses and insights into cheese ripening and flavor generation. BMC Genomics, 12(1), 545. doi:10.1186/1471-2164-12-545
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354746
Schwientek, P., Szczepanowski, R., Rückert, C., Stoye, J., & Pühler, A. (2011). Sequencing of high G + C microbial genomes using the ultrafast pyrosequencing technology. Journal of Biotechnology, 155(1), 68-77. doi:10.1016/j.jbiotec.2011.04.010
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2473990
Brune, I., Götker, S., Schneider, J., Rodionov, D. A., & Tauch, A. (2011). Negative transcriptional control of biotin metabolism genes by the TetR-type regulator BioQ in biotin-auxotrophic Corynebacterium glutamicum ATCC 13032. Journal of Biotechnology, 159(3), 225-234. doi:10.1016/j.jbiotec.2011.12.001
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2300232
Loyek, C., Kölling, J., Langenkämper, D., Niehaus, K., & Nattkemper, T. W. (2011). A Web2.0 Strategy for the Collaborative Analysis of Complex Bioimages. In J. Gama, E. Bradley, & J. Hollmén (Eds.), Lecture Notes in Computer Science: Vol. 7014. Advances in Intelligent Data Analysis X: 10th International Symposium, IDA 2011, Porto, Portugal, October 29-31, 2011. Proceedings (pp. 258-269). Berlin, Heidelberg: Springer. doi:10.1007/978-3-642-24800-9_25
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354731
Wibberg, D., Blom, J., Jaenicke, S., Kollin, F., Rupp, O., Scharf, B., Schneiker-Bekel, S., et al. (2011). Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid. Journal of Biotechnology, 155(1), 50-62. doi:10.1016/j.jbiotec.2011.01.010
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2317371
Küberl, A., Schneider, J., Thallinger, G. G., Anderl, I., Wibberg, D., Hajek, T., Jaenicke, S., et al. (2011). High-quality genome sequence of Pichia pastoris CBS7435. Journal of Biotechnology, 154(4), 312-320. doi:10.1016/j.jbiotec.2011.04.014
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326465
Torres Tejerizo, G., Florencia Del Papa, M., Draghi, W., Lozano, M., de los Angeles Giusti, M., Martini, C., Eugenia Salas, M., et al. (2011). First genomic analysis of the broad-host-range Rhizobium sp LPU83 strain, a member of the low-genetic diversity Oregon-like Rhizobium sp group. Journal of Biotechnology, 155(1), 3-10. doi:10.1016/j.jbiotec.2011.01.011
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375645
Barzantny, H., Brune, I., & Tauch, A. (2011). Molecular basis of human body odour formation: insights deduced from corynebacterial genome sequences. International Journal of Cosmetic Science, 34(1), 2-11. doi:10.1111/j.1468-2494.2011.00669.x
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2396576
Becker, J., Hackel, M., Jakobi, T., Rupp, O., Schneider, J., Szczepanowski, R., Bekel, T., et al. (2011). Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Journal of Biotechnology, 156(3), 227-235. doi:10.1016/j.jbiotec.2011.09.014
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326445
Schneider, J., Blom, J., Jaenicke, S., Linke, B., Brinkrolf, K., Neuweger, H., Tauch, A., et al. (2011). RAPYD - Rapid Annotation Platform for Yeast Data. Journal of Biotechnology, 155(1), 118-126. doi:10.1016/j.jbiotec.2010.10.076
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326518
Szczepanowski, R., Eikmeyer, F. G., Harfmann, J., Blom, J., Rogers, L. M., Top, E. M., & Schlüter, A. (2011). Sequencing and comparative analysis of IncP-1 alpha antibiotic resistance plasmids reveal a highly conserved backbone and differences within accessory regions. Journal of Biotechnology, 155(1), 95-103. doi:10.1016/j.jbiotec.2010.11.018
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2454721
Cerdeira, L. T., Cruz Schneider, M. P., Pinto, A. C., de Almeida, S. S., dos Santos, A. R., Vieira Barbosa, E. G., Ali, A., et al. (2011). Complete Genome Sequence of Corynebacterium pseudotuberculosis Strain CIP 52.97, Isolated from a Horse in Kenya. Journal of Bacteriology, 193(24), 7025-7026. doi:10.1128/JB.06293-11
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2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2453768
Becker, J., Timmermann, C., Jakobi, T., Rupp, O., Szczepanowski, R., Hackl, M., Goesmann, A., et al. (2011). Next-generation sequencing of the CHO cell transcriptome. BMC Proceedings, 5(Suppl. 8), P6. doi:10.1186/1753-6561-5-S8-P6
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2404874
Schatschneider, S., Vorhölter, F. - J., Rückert, C., Becker, A., Eisenreich, W., Pühler, A., & Niehaus, K. (2011). Genome-enabled determination of amino acid biosynthesis in Xanthomonas campestris pv. campestris and identification of biosynthetic pathways for alanine, glycine, and isoleucine by 13C-isotopologue profiling. Molecular Genetics and Genomics, 286(3-4), 247-259. doi:10.1007/s00438-011-0639-7
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2011 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2447751
Jaenicke, S., Zakrzewski, M., Jünemann, S., Pühler, A., Goesmann, A., & Schlüter, A. (2011). Analysis of the Metagenome from a Biogas-Producing Microbial Community by Means of Bioinformatics Methods. In F. J. de Bruijn (Ed.), Handbook of Molecular Microbial Ecology II: Metagenomics in Different Habitats (pp. 403-414). Wiley-Blackwell. doi:10.1002/9781118010549.ch39
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289952
Blom, J., Jakobi, T., Doppmeier, D., Jaenicke, S., Kalinowski, J., Stoye, J., & Goesmann, A. (2011). Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming. Bioinformatics, 27(10), 1351-1358. doi:10.1093/bioinformatics/btr151
PUB | DOI | WoS | PubMed | Europe PMC
 

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