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266 Publikationen

2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498160 OA
Schröder J, Maus I, Meyer K, et al. Complete genome sequence, lifestyle, and multi-drug resistance of the human pathogen Corynebacterium resistens DSM 45100 isolated from blood samples of a leukemia patient. BMC Genomics. 2012;13(1): 141.
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2012 | Dissertation | PUB-ID: 2541645
Trost E. Das bakterielle Pangenom: komparative Genomanalysen zur Identifizierung neuer Virulenzfaktoren des Corynebacterium diphtheriae-Clusters. Bielefeld; 2012.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2351519
Lenger J, Schröder M, Ennemann E, et al. Evaluation of sulfatase-directed quinone methide traps for proteomics. Bioorganic & Medical Chemistry. 2012;20(2):622-627.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2477132
Soares SC, Abreu VAC, Ramos RTJ, et al. PIPS: Pathogenicity Island Prediction Software. PLoS ONE. 2012;7(2): e30848.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2484618
Zakrzewski M, Goesmann A, Jaenicke S, et al. Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing. Journal of Biotechnology. 2012;158(4):248-258.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2513347
Trost E, Blom J, de Castro Soares S, et al. Pangenomic Study of Corynebacterium diphtheriae That Provides Insights into the Genomic Diversity of Pathogenic Isolates from Cases of Classical Diphtheria, Endocarditis, and Pneumonia. Journal of bacteriology. 2012;194(12):3199-3215.
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2012 | Dissertation | PUB-ID: 2575272
Barzantny H. Transkriptionelle Genregulation im lipophilen Hautisolat Corynebacterium jeikeium K411 im Rahmen der Ausprägung des menschlichen Schweißgeruchs. Bielefeld; 2012.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2471858
Ausec L, Zakrzewski M, Goesmann A, Schlüter A, Mandic-Mulec I. Correction: bioinformatic analysis reveals high diversity of bacterial genes for laccase-like enzymes. PLoS ONE. 2012;7(1).
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2472279
Eikmeyer FG, Hadiati A, Szczepanowski R, et al. The complete genome sequences of four new IncN plasmids from wastewater treatment plant effluent provide new insights into IncN plasmid diversity and evolution. Plasmid. 2012;68(1):13-24.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2536068
Nolla Ardevol V, Strous M, Sorokin DY, Merkel AY, Tegetmeyer H. Activity and diversity of haloalkaliphilic methanogens in Central Asian soda lakes. Journal of Biotechnology. 2012;161(2):167-173.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490535
Heinl S, Wibberg D, Eikmeyer FG, et al. Insights into the completely annotated genome of Lactobacillus buchneri CD034, a strain isolated from stable grass silage. Journal of Biotechnology. 2012;161(2):153-166.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2486060 OA
Schwientek P, Szczepanowski R, Rückert C, et al. The complete genome sequence of the acarbose producer Actinoplanes sp. SE50/110. BMC Genomics. 2012;13(1): 112.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2471667
Sabbadini PS, Assis MC, Trost E, et al. Corynebacterium diphtheriae 67-72p hemagglutinin, characterized as the protein DIP0733, contributes to invasion and induction of apoptosis in HEp-2 cells. Microbial Pathogenesis. 2012;52(3):165-176.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2471681
Rademacher A, Zakrzewski M, Schlüter A, et al. Characterization of microbial biofilms in a thermophilic biogas system by high-throughput metagenome sequencing. FEMS Microbiology Ecology. 2012;79(3):785-799.
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2012 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2515687 OA
Kölling J, Rathke M, Abouna S, Khan M, Nattkemper TW. Analyzing Multi-Tag Bioimages with BIOIMAX colocation mining tools. Presented at the IEEE International Symposium on BIOMEDICAL IMAGING (ISBI), Barcelona.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501364
Meleady P, Hoffrogge R, Henry M, et al. Utilization and evaluation of CHO-specific sequence databases for mass spectrometry based proteomics. Biotechnology and Bioengineering. 2012;109(6):1386-1394.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2474002
Schneider J, Rupp O, Trost E, et al. Genome sequence of Wickerhamomyces anomalus DSM 6766 reveals genetic basis of biotechnologically important antimicrobial activities. FEMS Yeast Research. 2012;12(3):382-386.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2478526
Hackl M, Jadhav V, Jakobi T, et al. Computational identification of microRNA gene loci and precursor microRNA sequences in CHO cell lines. Journal of Biotechnology. 2012;158(3):151-155.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2405255
Persicke M, Rückert C, Plassmeier J, et al. MSEA: metabolite set enrichment analysis in the MeltDB metabolomics software platform: metabolic profiling of Corynebacterium glutamicum as an example. Metabolomics. 2012;8(2):310-322.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2496829
Cox AJ, Bauer MJ, Jakobi T, Rosone G. Large-scale compression of genomic sequence databases with the Burrows-Wheeler transform. Bioinformatics. 2012;28(11):1415-1419.
PUB | DOI | WoS | PubMed | Europe PMC | arXiv
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2544774
Schneider J, Andrea H, Blom J, et al. Draft Genome Sequence of Wickerhamomyces ciferrii NRRL Y-1031 F-60-10. Eukaryotic Cell. 2012;11(12):1582-1583.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2533638 OA
Zahoor ul Hassan A, Lindner S, Wendisch VF. Metabolic engineering of Corynebacterium glutamicum aimed at alternative carbon sources and new products. Computational and Structural Biotechnology Journal. 2012;3(4): e201210004.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500805
Barzantny H, Schröder J, Strotmeier J, Fredrich E, Brune I, Tauch A. The transcriptional regulatory network of Corynebacterium jeikeium K411 and its interaction with metabolic routes contributing to human body odor formation. Journal of biotechnology. 2012;159(3):235-248.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2542210
Parreira VR, Costa M, Eikmeyer FG, Blom J, Prescott JF. Sequence of Two Plasmids from Clostridium perfringens Chicken Necrotic Enteritis Isolates and Comparison with C. perfringens Conjugative Plasmids. PLoS ONE. 2012;7(11):e49753.
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2012 | Bielefelder E-Dissertation | PUB-ID: 2533144 OA
Zakrzewski M. Development of computational methods for the analysis of metagenome and metatranscriptome data. Bielefeld: Universität Bielefeld; 2012.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2530885
Brinkrolf K, Schneider J, Knecht M, Rückert C, Tauch A. Draft Genome Sequence of Turicella otitidis ATCC 51513, Isolated from Middle Ear Fluid from a Child with Otitis Media. Journal of Bacteriology. 2012;194(21):5968-5969.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2481783 OA
Kölling J, Langenkämper D, Sylvie A, Michale K, Nattkemper TW. WHIDE - A web tool for visual data mining colocation patterns in multivariate bioimages. Bioinformatics. 2012;28(8):1143-1150.
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2012 | Bielefelder E-Dissertation | PUB-ID: 2484427 OA
Schwientek P. Genomics and transcriptomics of the industrial acarbose producer Actinoplanes sp. SE50/110. Bielefeld: Universität Bielefeld; 2012.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2518300
Schröder J, Glaub A, Schneider J, Trost E, Tauch A. Draft genome sequence of Corynebacterium bovis DSM 20582, which causes clinical mastitis in dairy cows. Journal of Bacteriology. 2012;194(16): 4437.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2521149
La Russa M, Bogen C, Uhmeyer A, et al. Functional analysis of three type-2 DGAT homologue genes for triacylglycerol production in the green microalga Chlamydomonas reinhardtii. Journal of Biotechnology. 2012;162(1):13-20.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2530446
Stolze Y, Eikmeyer FG, Wibberg D, et al. IncP-1 beta plasmids of Comamonas sp and Delftia sp strains isolated from a wastewater treatment plant mediate resistance to and decolorization of the triphenylmethane dye crystal violet. Microbiology. 2012;158(Pt_8):2060-2072.
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2012 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2528991
Cox AJ, Jakobi T, Rosone G, Schulz-Trieglaff OB. Comparing DNA Sequence Collections by Direct Comparison of Compressed Text Indexes. In: Raphael B, Tang J, eds. Algorithms in Bioinformatics. Lecture Notes in Computer Science. Vol 7534. 2012: 214-224.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526298
Maus I, Wibberg D, Stantscheff R, et al. Complete Genome Sequence of the Hydrogenotrophic, Methanogenic Archaeon Methanoculleus bourgensis Strain MS2T, Isolated from a Sewage Sludge Digester. Journal of Bacteriology. 2012;194(19):5487-5488.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501312
Gorzolka K, Lissel M, Kessler N, Loch-Ahring S, Niehaus K. Metabolite fingerprinting of barley whole seeds, endosperms, and embryos during industrial malting. Journal of Biotechnology. 2012;159(3):177-187.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354752 OA
Trost E, Al-Dilaimi A, Papavasiliou P, et al. Comparative analysis of two complete Corynebacterium ulcerans genomes and detection of candidate virulence factors. BMC Genomics. 2011;12(1): 383.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2442587 OA
Schröder J, Maus I, Trost E, Tauch A. Complete genome sequence of Corynebacterium variabile DSM 44702 isolated from the surface of smear-ripened cheeses and insights into cheese ripening and flavor generation. BMC Genomics. 2011;12(1): 545.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354746
Schwientek P, Szczepanowski R, Rückert C, Stoye J, Pühler A. Sequencing of high G + C microbial genomes using the ultrafast pyrosequencing technology. Journal of Biotechnology. 2011;155(1):68-77.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2473990
Brune I, Götker S, Schneider J, Rodionov DA, Tauch A. Negative transcriptional control of biotin metabolism genes by the TetR-type regulator BioQ in biotin-auxotrophic Corynebacterium glutamicum ATCC 13032. Journal of Biotechnology. 2011;159(3):225-234.
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2300232 OA
Loyek C, Kölling J, Langenkämper D, Niehaus K, Nattkemper TW. A Web2.0 Strategy for the Collaborative Analysis of Complex Bioimages. In: Gama J, Bradley E, Hollmén J, eds. Advances in Intelligent Data Analysis X: 10th International Symposium, IDA 2011, Porto, Portugal, October 29-31, 2011. Proceedings. Lecture Notes in Computer Science. Vol 7014. Berlin, Heidelberg: Springer; 2011: 258-269.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354731
Wibberg D, Blom J, Jaenicke S, et al. Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid. Journal of Biotechnology. 2011;155(1):50-62.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2317371
Küberl A, Schneider J, Thallinger GG, et al. High-quality genome sequence of Pichia pastoris CBS7435. Journal of Biotechnology. 2011;154(4):312-320.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326465
Torres Tejerizo G, Florencia Del Papa M, Draghi W, et al. First genomic analysis of the broad-host-range Rhizobium sp LPU83 strain, a member of the low-genetic diversity Oregon-like Rhizobium sp group. Journal of Biotechnology. 2011;155(1):3-10.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2396576
Becker J, Hackel M, Jakobi T, et al. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Journal of Biotechnology. 2011;156(3):227-235.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375645
Barzantny H, Brune I, Tauch A. Molecular basis of human body odour formation: insights deduced from corynebacterial genome sequences. International Journal of Cosmetic Science. 2011;34(1):2-11.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326445
Schneider J, Blom J, Jaenicke S, et al. RAPYD - Rapid Annotation Platform for Yeast Data. Journal of Biotechnology. 2011;155(1):118-126.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326518
Szczepanowski R, Eikmeyer FG, Harfmann J, et al. Sequencing and comparative analysis of IncP-1 alpha antibiotic resistance plasmids reveal a highly conserved backbone and differences within accessory regions. Journal of Biotechnology. 2011;155(1):95-103.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2454721
Cerdeira LT, Cruz Schneider MP, Pinto AC, et al. Complete Genome Sequence of Corynebacterium pseudotuberculosis Strain CIP 52.97, Isolated from a Horse in Kenya. Journal of Bacteriology. 2011;193(24):7025-7026.
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2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2453768
Becker J, Timmermann C, Jakobi T, et al. Next-generation sequencing of the CHO cell transcriptome. BMC Proceedings. 2011;5(Suppl. 8):P6.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2404874
Schatschneider S, Vorhölter F-J, Rückert C, et al. Genome-enabled determination of amino acid biosynthesis in Xanthomonas campestris pv. campestris and identification of biosynthetic pathways for alanine, glycine, and isoleucine by 13C-isotopologue profiling. Molecular Genetics and Genomics. 2011;286(3-4):247-259.
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2011 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2447751
Jaenicke S, Zakrzewski M, Jünemann S, Pühler A, Goesmann A, Schlüter A. Analysis of the Metagenome from a Biogas-Producing Microbial Community by Means of Bioinformatics Methods. In: de Bruijn FJ, ed. Handbook of Molecular Microbial Ecology II: Metagenomics in Different Habitats. Wiley-Blackwell; 2011: 403-414.
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