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266 Publikationen

2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904860
Wendisch VF, Fernandes de Brito L, Gil Lopez M, et al. The flexible feedstock concept in Industrial Biotechnology: metabolic engineering of Escherichia coli, Corynebacterium glutamicum, Pseudomonas, Bacillus and yeast strains for access to alternative carbon sources. Journal of Biotechnology. 2016;234:139-157.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901413 OA
Gorzolka K, Kölling J, Nattkemper TW, Niehaus K. Spatio-Temporal Metabolite Profiling of the Barley Germination Process by MALDI MS Imaging. PLOS ONE. 2016;11(3): 0150208.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904815 OA
Stolze Y, Bremges A, Rumming M, et al. Identification and genome reconstruction of abundant distinct taxa in microbiomes from one thermophilic and three mesophilic production-scale biogas plants. Biotechnology for Biofuels. 2016;9: 156.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2906597
Jaeger D, Pilger C, Hachmeister H, et al. Label-free in vivo analysis of intracellular lipid droplets in the oleaginous microalga Monoraphidium neglectum by coherent Raman scattering microscopy. Scientific Reports. 2016;6: 35340.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907679 OA
Schwarzhans JP, Wibberg D, Winkler A, Luttermann T, Kalinowski J, Friehs K. Non-canonical integration events in Pichia pastoris encountered during standard transformation analysed with genome sequencing. Scientific Reports. 2016;6: 38952.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903655 OA
Schwarzhans JP, Wibberg D, Winkler A, Luttermann T, Kalinowski J, Friehs K. Integration event induced changes in recombinant protein productivity in Pichia pastoris discovered by whole genome sequencing and derived vector optimization. Microbial Cell Factories. 2016;15: 84.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905495 OA
Irla M, Heggeset TM, Naerdal I, et al. Genome-based genetic tool development for Bacillus methanolicus: theta- and rolling circle-replicating plasmids for inducible gene expression and application to methanol-based cadaverine production. Frontiers in Microbiology. 2016;7: 1481.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903660 OA
Steffens T, Vorhölter F-J, Giampa M, Hublik G, Pühler A, Niehaus K. The influence of a modified lipopolysaccharide O-antigen on the biosynthesis of xanthan in Xanthomonas campestris pv. campestris B100. BMC Microbiology. 2016;16: 93.
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2016 | Bielefelder E-Dissertation | PUB-ID: 2902049 OA
Dörr D. Gene family-free genome comparison. Bielefeld: Universität Bielefeld; 2016.
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2016 | Bielefelder E-Dissertation | PUB-ID: 2904907 OA
Ortseifen V. Genombasierte Modellbildung zur Biosynthese von Acarviostatin-Metaboliten in drei Actinoplanes sp. SE50/110-Stämmen. Bielefeld: Universität Bielefeld; 2016.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907439
Lenta BN, Ngatchou J, Frese M, et al. Purpureone, an antileishmanial ergochrome from the endophytic fungus Purpureocillium lilacinum. ZEITSCHRIFT FUR NATURFORSCHUNG SECTION B-A JOURNAL OF CHEMICAL SCIENCES. 2016;71(11):1159-1167.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2906715
Koeck DE, Wibberg D, Maus I, et al. Corrigendum to "Complete genome sequence of the cellulolytic thermophile Ruminoclostridium cellulosi wild-type strain DG5 isolated from a thermophilic biogas plant (J. Biotechnol. 188 (2014) 136–137)")". Journal of Biotechnology. 2016;237:35.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2906183
Schulte F, Flaschel E, Niehaus K. Proteome-Based Analysis of Colloidal Instability Enables the Detection of Haze-Active Proteins in Beer. Journal of Agricultural and Food Chemistry. 2016;64(35):6752-6761.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905630
Gren T, Ortseifen V, Wibberg D, et al. Genetic engineering in Actinoplanes sp SE50/110-development of an intergeneric conjugation system for the introduction of actinophage-based integrative vectors. Journal of Biotechnology. 2016;232:79-88.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907633 OA
Lux M, Krüger J, Rinke C, et al. acdc – Automated Contamination Detection and Confidence estimation for single-cell genome data. BMC Bioinformatics. 2016;17: 543.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904047
Eberhardt D, Jorge J, Perez F, Taniguchi H, Wendisch VF. Roles of export genes cgmA and lysE for the production of L-arginine and L-citrulline by Corynebacterium glutamicum. Appl Microbiol Biotechnol. 2016;100(19):8465-8474.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904691
Martini MC, Wibberg D, Lozano M, et al. Genomics of high molecular weight plasmids isolated from an on-farm biopurification system. Scientific Reports. 2016;6: 28284.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904704
Celis JS, Wibberg D, Winkler A, Wilke T, Kalinowski J. Complete mitochondrial genome of the scleractinian coral Porites rus. Mitochondrial DNA. 2016;27(5):3695-3696.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903489
Maus I, Cibis KG, Bremges A, et al. Genomic characterization of Defluviitoga tunisiensis L3, a key hydrolytic bacterium in a thermophilic biogas plant and its abundance as determined by metagenome fragment recruitment. Journal of Biotechnology. 2016;232:50-60.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903302
Wibberg D, Bremges A, Dammann-Kalinowski T, et al. Finished genome sequence and methylome of the cyanide-degrading Pseudomonas pseudoalcaligenes strain CECT5344 as resolved by single-molecule real-time sequencing. Journal of Biotechnology. 2016;232:61-68.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2902126
Liebe S, Wibberg D, Winkler A, Pühler A, Schlüter A, Varrelmann M. Taxonomic analysis of the microbial community in stored sugar beets using high-throughput sequencing of different marker genes. FEMS Microbiology Ecology. 2016;92(2): fiw004.
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2016 | Kurzbeitrag Konferenz / Poster | PUB-ID: 2905827 OA
Weisshaar B, Himmelbauer H, Schmidt T, et al. Sugar Beet BeetMap-3, and Steps to Improve the Genome Assembly and Genome Sequence Annotation (W875). Presented at the Plant and Animal Genome XXIV Conference, San Diego, USA.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905505
Wolf T, Gren T, Thieme E, et al. Targeted genome editing in the rare actinomycete Actinoplanes sp SE50/110 by using the CRISPR/Cas9 System. Journal of Biotechnology. 2016;231:122-128.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905632
Walter F, Grenz S, Ortseifen V, Persicke M, Kalinowski J. Corynebacterium glutamicum ggtB encodes a functional gamma-glutamyl transpeptidase with gamma-glutamyl dipeptide synthetic and hydrolytic activity. Journal of Biotechnology. 2016;232:99-109.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905170 OA
Hilker R, Stadermann KB, Schwengers O, et al. ReadXplorer 2 - detailed read mapping analysis and visualization from one single source. Bioinformatics. 2016;32(24):3702-3708.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903776
Perez F, Peters-Wendisch P, Wendisch VF. Engineering Corynebacterium glutamicum for fast production of L-lysine and L-pipecolic acid. Appl. Microbiol. Biotechnol. 2016;100(18):8075-8090.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903593
Jorge J, Leggewie C, Wendisch VF. A new metabolic route for the production of gamma-aminobutyric acid by Corynebacterium glutamicum. Amino Acids. 2016;48(11):2519-2531.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901989
Wendisch VF, Jorge J, Perez F, Sgobba E. Updates on Industrial Production of Amino Acids using Corynebacterium glutamicum. World J Microbiol Biotechnol. 2016;32(6): 105.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900943
Langenkämper D, Jakobi T, Feld D, Jelonek L, Goesmann A, Nattkemper TW. Comparison of Acceleration Techniques for Selected Low-Level Bioinformatics Operations. Frontiers in Genetics. 2016;7: 5.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901729
Bremges A, Singer E, Woyke T, Sczyrba A. MeCorS: Metagenome-enabled error correction of single cell sequencing reads. Bioinformatics. 2016;32(14):2199-2201.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901243
Wendler S, Otto A, Ortseifen V, et al. Comparative proteome analysis of Actinoplanes sp SE50/110 grown with maltose or glucose shows Minor differences for acarbose biosynthesis proteins but major differences for saccharide transporters. Journal of Proteomics. 2016;131:140-148.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901675
Krahn T, Wibberg D, Maus I, et al. Intraspecies transfer of the chromosomally encoded Acinetobacter baumannii blaNDM-1 carbapenemase gene. Antimicrobial Agents and Chemotherapy. 2016;60(5):3032-3040.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901808
Alkhateeb R, Vorhölter F-J, Rückert C, et al. Genome wide transcription start sites analysis of the Xanthomonas campestris pv. campestris B100 with insights into the gum gene cluster directing the biosynthesis of the exopolysaccharide xanthan. J Biotechnol. 2016;225:18-28.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2902089
Lauersen KJ, Willamme R, Coosemans N, Joris M, Kruse O, Remacle C. Peroxisomal microbodies are at the crossroads of acetate assimilation in the green microalga Chlamydomonas reinhardtii. Algal Research. 2016;16:266-274.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905993
Giampa M, Lissel M, Patschkowski T, et al. Maleic anhydride proton sponge as a novel MALDI matrix for the visualization of small molecules (< 250 m/z) in brain tumors by routine MALDI ToF imaging mass spectrometry. Chemical Communications. 2016;52(63):9801-9804.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905260
Maus I, Koeck DE, Cibis KG, et al. Unraveling the microbiome of a thermophilic biogas plant by metagenome and metatranscriptome analysis complemented by characterization of bacterial and archaeal isolates. Biotechnology for Biofuels. 2016;9(1): 171.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2906720
Nguyen TV, Wibberg D, Battenberg K, et al. An assemblage of Frankia Cluster II strains from California contains the canonical nod genes and also the sulfotransferase gene nodH. BMC Genomics. 2016;17: 796.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905504
Kröber M, Verwaaijen B, Wibberg D, Winkler A, Pühler A, Schlüter A. Comparative transcriptome analysis of the biocontrol strain Bacillus amyloliquefaciens FZB42 as response to biofilm formation analyzed by RNA sequencing. Journal of Biotechnology. 2016;231:212-223.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905629
Tomazetto G, Hahnke S, Koeck DE, et al. Complete genome analysis of Clostridium bornimense strain M2/40(T). A new acidogenic Clostridium species isolated from a mesophilic two-phase laboratory-scale biogas reactor. Journal of Biotechnology. 2016;232:38-49.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905631
Leßmeier L, Alkhateeb R, Schulte F, et al. Applying DNA affinity chromatography to specifically screen for sucrose-related DNA-binding transcriptional regulators of Xanthomonas campestris. Journal of Biotechnology. 2016;232:89-98.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904234
Ortseifen V, Stolze Y, Maus I, et al. An integrated metagenome and -proteome analysis of the microbial community residing in a biogas production plant. Journal of Biotechnology. 2016;231:268-279.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904474
Perez F, Vasco-Cardenas MF, Barreiro C. Biotypes analysis of Corynebacterium glutamicum growing in dicarboxylic acids demonstrates the existence of industrially-relevant intra-species variations. Journal of Proteomics. 2016;146:172-183.
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2016 | Patent | PUB-ID: 2907839
Jorge J, Wendisch VF. Biological preparation of 5-aminovalerate. 28.06.2016.
PUB
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907079
Wippermann A, Rupp O, Brinkrolf K, Hoffrogge R, Noll T. Integrative analysis of DNA methylation and gene expression in butyrate-treated CHO cells. Journal of Biotechnology. 2016;257:150-161.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2761035
Arnold M, Wibberg D, Blom J, et al. Draft Genome Sequence of Pseudomonas aeruginosa Strain WS136, a Highly Cytotoxic ExoS-Positive Wound Isolate Recovered from Pyoderma Gangrenosum. Genome announcements. 2015;3(4).
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2785064 OA
Krahn T, Wibberg D, Maus I, et al. Complete Genome Sequence of the Clinical Strain Acinetobacter baumannii R2090 Carrying the Chromosomally Encoded Metallo-β-Lactamase GeneblaNDM-1. Genome Announcements. 2015;3(5): e01008-15.
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2015 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2702877
Leßmeier L, Zahoor ul Hassan A, Lindner S, Wendisch VF. Metabolic Engineering of *Corynebacterium glutamicum* for Alternative Carbon Source Utilization. In: Burkovski A, ed. *Corynebacterium glutamicum*: From Systems Biology to Biotechnological Applications. Caister Academic Press; 2015: 57-70.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758144
Wibberg D, Rupp O, Jelonek L, et al. Improved genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 as established by deep mate-pair sequencing on the MiSeq (Illumina) system. Journal of Biotechnology. 2015;203:19-21.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2722138 OA
Kessler N, Bonte A, Albaum S, et al. Learning to classify organic and conventional wheat - a machine-learning driven approach using the MeltDB 2.0 metabolomics analysis platform. Frontiers in Bioinformatics and Computational Biology. 2015;3: 35.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2753011 OA
Lauersen KJ, Huber I, Wichmann J, et al. Investigating the dynamics of recombinant protein secretion from a microalgal host. Journal of Biotechnology. 2015;215:62-71.
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