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266 Publikationen

2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2707731
Koeck, D.E., Wibberg, D., Maus, I., Winkler, A., Albersmeier, A., Zverlov, V.V., Liebl, W., Pühler, A., Schwarz, W.H., Schlüter, A.: Complete genome sequence of the cellulolytic thermophile Ruminoclostridium cellulosi wild-type strain DG5 isolated from a thermophilic biogas plant. Journal of Biotechnology. 188, 136-137 (2014).
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2710431
Wendler, S., Ortseifen, V., Persicke, M., Klein, A., Neshat, A., Niehaus, K., Schneiker-Bekel, S., Walter, F., Wehmeier, U.F., Kalinowski, J., Pühler, A.: Carbon source dependent biosynthesis of acarviose metabolites in Actinoplanes sp SE50/110. Journal of Biotechnology. 191, 113-120 (2014).
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676049
Schlüter, A., Nordmann, P., Bonnin, R.A., Millemann, Y., Eikmeyer, F.G., Wibberg, D., Pühler, A., Poirel, L.: IncH-type plasmid harboring the blaCTX-M-15, blaDHA-1, and qnrB4 genes recovered from animal isolates. Antimicrobial Agents and Chemotherapy. 58, 3768-3773 (2014).
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2662055
Wibberg, D., Luque-Almagro, V.M., Igeño, M.I., Bremges, A., Roldán, M.D., Merchán, F., Sáez, L.P., Guijo, M.I., Manso, M.I., Macías, D., Cabello, P., Becerra, G., Ibáñez, M.I., Carmona, M.I., Escribano, M.P., Castillo, F., Sczyrba, A., Moreno-Vivián, C., Blasco, R., Pühler, A., Schlüter, A.: Complete genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344. Journal of biotechnology. 175, 67-68 (2014).
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2644101 OA
Schaffert, L., Albersmeier, A., Bednarz, H., Niehaus, K., Kalinowski, J., Rückert, C.: Genome sequence of the marine bacterium Corynebacterium maris type strain Coryn-1T (= DSM 45190T). Standards in Genomic Sciences. 8, 516-524 (2013).
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2013 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2611648
Dias Vieira Braga, M., Chauve, C., Dörr, D., Jahn, K., Stoye, J., Thévenin, A., Wittler, R.: The Potential of Family-Free Genome Comparison. In: Chauve, C., El-Mabrouk, N., and Tannier, E. (eds.) Models and Algorithms for Genome Evolution. Computational Biology Series. 19, p. 287-307. Springer Verlag (2013).
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2631977 OA
Petri, K., Walter, F., Persicke, M., Rückert, C., Kalinowski, J.: A novel type of N-acetylglutamate synthase is involved in the first step of arginine biosynthesis in Corynebacterium glutamicum. BMC Genomics. 14, : 713 (2013).
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2631969 OA
Mentz, A., Neshat, A., Pfeifer-Sancar, K., Pühler, A., Rückert, C., Kalinowski, J.: Comprehensive discovery and characterization of small RNAs in Corynebacterium glutamicum ATCC 13032. BMC Genomics. 14, 714 (2013).
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2643373 OA
Pfeifer-Sancar, K., Mentz, A., Rückert, C., Kalinowski, J.: Comprehensive analysis of the Corynebacterium glutamicum transcriptome using an improved RNAseq technique. BMC Genomics. 14, 888 (2013).
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2605193 OA
Eikmeyer, F.G., Rademacher, A., Hanreich, A., Hennig, M., Jaenicke, S., Maus, I., Wibberg, D., Zakrzewski, M., Pühler, A., Klocke, M., Schlüter, A.: Detailed analysis of metagenome datasets obtained from biogas-producing microbial communities residing in biogas reactors does not indicate the presence of putative pathogenic microorganisms. Biotechnology for Biofuels. 6, : 49 (2013).
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2579037
Bogen, C., Klassen, V., Wichmann, J., La Russa, M., Doebbe, A., Grundmann, M., Uronen, P., Kruse, O., Mussgnug, J.H.: Identification of Monoraphidium contortum as a promising species for liquid biofuel production. Bioresource Technology. 133, 622-626 (2013).
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2575011
Ander, C., Schulz-Trieglaff, O.B., Stoye, J., Cox, A.J.: metaBEETL: high-throughput analysis of heterogeneous microbial populations from shotgun DNA sequences. BMC Bioinformatics. 14, S2 (2013).
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560776
Barzantny, H., Guttmann, S., Lässig, C., Brune, I., Tauch, A.: Transcriptional control of lipid metabolism by the MarR-like regulator FamR and the global regulator GlxR in the lipophilic axilla isolateCorynebacterium jeikeiumK411. Microbial Biotechnology. 6, 118-130 (2013).
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2552500
Soares, S.C., Silva, A., Trost, E., Blom, J., Ramos, R., Carneiro, A., Ali, A., Santos, A.R., Pinto, A.C., Diniz, C., Barbosa, E.G.V., Dorella, F.A., Aburjaile, F., Rocha, F.S., Nascimento, K.K.F., Guimares, L.C., Almeida, S., Hassan, S.S., Bakhtiar, S.M., Pereira, U.P., Abreu, V.A.C., Schneider, M.P.C., Miyoshi, A., Tauch, A., Azevedo, V.: The Pan-Genome of the Animal Pathogen Corynebacterium pseudotuberculosis Reveals Differences in Genome Plasticity between the Biovar ovis and equi Strains. PLoS ONE. 8, : e53818 (2013).
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2549908
Wibberg, D., Jelonek, L., Rupp, O., Kröber, M., Eikmeyer, F.G., Goesmann, A., Hartmann, A., Borriss, R., Grosch, R., Pühler, A., Schlüter, A.: Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14. Journal of Biotechnology. 167, 142-155 (2013).
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2614249
Pietruszka, J., Schembecker, G., Wendisch, V.F.: Research on industrial biotechnology within the CLIB-Graduate Cluster-Part III. J Biotechnol. 167, 73-74 (2013).
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2614869
Soares, S.C., Trost, E., Ramos, R.T.J., Carneiro, A.R., Santos, A.R., Pinto, A.C., Barbosa, E., Aburjaile, F., Ali, A., Diniz, C.A.A., Hassan, S.S., Fiaux, K., Guimarães, L.C., Bakhtiar, S.M., Pereira, U., Almeida, S.S., Abreu, V.A.C., Rocha, F.S., Dorella, F.A., Miyoshi, A., Silva, A., Azevedo, V., Tauch, A.: Genome sequence of Corynebacterium pseudotuberculosis biovar equi strain 258 and prediction of antigenic targets to improve biotechnological vaccine production. Journal of Biotechnology. 167, 135-141 (2013).
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2633427
Wibberg, D., Blom, J., Rückert, C., Winkler, A., Albersmeier, A., Pühler, A., Schlüter, A., Scharf, B.E.: Draft Genome Sequence of Sinorhizobium meliloti RU11/001, a model organism for flagellum structure, motility and chemotaxis. Journal of Biotechnology. 168, 731-733 (2013).
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2632946
Köhler, K.A.K., Rückert, C., Schatschneider, S., Vorhölter, F.-J., Szczepanowski, R., Blank, L.M., Niehaus, K., Goesmann, A., Pühler, A., Kalinowski, J., Schmid, A.: Complete genome sequence of Pseudomonas sp. strain VLB120 a solvent tolerant, styrene degrading bacterium, isolated from forest soil. Journal of Biotechnology. 168, 729-730 (2013).
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2013 | Dissertation | PUB-ID: 2616461
Schatschneider, S.: Modellierung und experimentelle Analyse des Stoffwechsels von Xanthomonas campestris pv. campestris B100 unter Verwendung systembiologischer Methoden. Bielefeld (2013).
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2614906
Wendler, S., Hürtgen, D., Kalinowski, J., Klein, A., Niehaus, K., Schulte, F., Schwientek, P., Wehlmann, H., Wehmeier, U.F., Pühler, A.: The cytosolic and extracellular proteomes of Actinoplanes sp. SE50/110 led to the identification of gene products involved in acarbose metabolism. Journal of Biotechnology. 167, 178-189 (2013).
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2582332
Guimarães, L.C., Soares, S.C., Albersmeier, A., Blom, J., Jaenicke, S., Azevedo, V., Soriano, F., Tauch, A., Trost, E.: Complete Genome Sequence of Corynebacterium urealyticum Strain DSM 7111, Isolated from a 9-Year-Old Patient with Alkaline-Encrusted Cystitis. Genome announcements. 1, : e00264-13 (2013).
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645247
Maus, I., Wibberg, D., Stantscheff, R., Cibis, K., Eikmeyer, F.G., König, H., Pühler, A., Schlüter, A.: Complete genome sequence of the hydrogenotrophic Archaeon Methanobacterium sp Mb1 isolated from a production-scale biogas plant. Journal of Biotechnology. 168, 734-736 (2013).
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2565642
Dagan, T., Roettger, M., Stucken, K., Landan, G., Koch, R., Major, P., Gould, S.B., Goremykin, V.V., Rippka, R., de Marsac, N.T., Gugger, M., Lockhart, P.J., Allen, J.F., Brune, I., Maus, I., Pühler, A., Martin, W.F.: Genomes of Stigonematalean Cyanobacteria (Subsection V) and the Evolution of Oxygenic Photosynthesis from Prokaryotes to Plastids. Genome Biology And Evolution. 5, 31-44 (2013).
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2605230
Hanreich, A., Schimpf, U., Zakrzewski, M., Schlüter, A., Benndorf, D., Heyer, R., Rapp, E., Pühler, A., Reichl, U., Klocke, M.: Metagenome and metaproteome analyses of microbial communities in mesophilic biogas-producing anaerobic batch fermentations indicate concerted plant carbohydrate degradation. Systematic and Applied Microbiology. 36, 330-338 (2013).
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2605244
Schatschneider, S., Persicke, M., Watt, T., Hublik, G., Pühler, A., Niehaus, K., Vorhölter, F.-J.: Establishment, in silico analysis, and experimental verification of a large-scale metabolic network of the xanthan producing Xanthomonas campestris pv. campestris strain B100. Journal of Biotechnology. 167, 123-134 (2013).
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2609868
Shah, V., Zakrzewski, M., Wibberg, D., Eikmeyer, F.G., Schlüter, A., Madamwar, D.: Taxonomic Profiling and Metagenome Analysis of a Microbial Community from a Habitat Contaminated with Industrial Discharges. Microbial Ecology. 66, 533-550 (2013).
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2606908
Fredrich, E., Barzantny, H., Brune, I., Tauch, A.: Daily battle against body odor: towards the activity of the axillary microbiota. Trends in microbiology. 21, 305-312 (2013).
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2625790
Musa, Y.R., Baesell, K., Schatschneider, S., Vorhölter, F.-J., Becher, D., Niehaus, K.: Dynamic protein phosphorylation during the growth of Xanthomonas campestris pv. campestris B100 revealed by a gel-based proteomics approach. Journal of Biotechnology. 167, 111-122 (2013).
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2635898
O'Connell, A., An, S.-Q., McCarthy, Y., Schulte, F., Niehaus, K., He, Y.-Q., Tang, J.-L., Ryan, R.P., Dow, J.M.: Proteomics Analysis of the Regulatory Role of Rpf/DSF Cell-to-Cell Signaling System in the Virulence of Xanthomonas campestris. Molecular Plant-Microbe Interactions. 26, 1131-1137 (2013).
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2635526
Koeck, D.E., Wibberg, D., Koellmeier, T., Blom, J., Jaenicke, S., Winkler, A., Albersmeier, A., Zverlov, V.V., Pühler, A., Schwarz, W.H., Schlüter, A.: Draft genome sequence of the cellulolytic Clostridium thermocellum wild-type strain BC1 playing a role in cellulosic biomass degradation. Journal of Biotechnology. 168, 62-63 (2013).
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2013 | Dissertation | PUB-ID: 2616174
Müller, B.: Differentielle Analyse des Phosphoproteoms Apoptose-induzierter Jurkat ACC 282-Zellen. Logos-Verl., Berlin (2013).
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2013 | Bielefelder E-Dissertation | PUB-ID: 2620945 OA
Haasner, K.: Untersuchung des Argininmetabolismus und dessen Regulation in Corynebacterium glutamicum ATCC 13032. Universitätsbibliothek Bielefeld, Bielefeld (2013).
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2621424
Rafiqi, M., Jelonek, L., Akum, N.F., Zhang, F., Kogel, K.-H.: Effector candidates in the secretome of Piriformospora indica, a ubiquitous plant-associated fungus. Frontiers in Plant Science. 4, 228 (2013).
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2557080
Bonnin, R.A., Poirel, L., Nordmann, P., Eikmeyer, F.G., Wibberg, D., Pühler, A., Schlüter, A.: Complete sequence of broad-host-range plasmid pNOR-2000 harbouring the metallo-beta-lactamase gene blaVIM-2 from Pseudomonas aeruginosa. Journal of Antimicrobial Chemotherapy. 68, 1060-1065 (2013).
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2614207
Eikmeyer, F.G., Köfinger, P., Poschenel, A., Jünemann, S., Zakrzewski, M., Heinl, S., Mayrhuber, E., Grabherr, R., Pühler, A., Schwab, H., Schlüter, A.: Metagenome analyses reveal the influence of the inoculant Lactobacillus buchneri CD034 on the microbial community involved in grass silaging. Journal of Biotechnology. 167, 334-343 (2013).
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548236
Schwientek, P., Wendler, S., Neshat, A., Eirich, C., Rückert, C., Klein, A., Wehmeier, U.F., Kalinowski, J., Stoye, J., Pühler, A.: Comparative RNA-sequencing of the acarbose producer Actinoplanes sp. SE50/110 cultivated in different growth media. Journal of Biotechnology. 167, 166-177 (2013).
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548286
Luque-Almagro, V.M., Acera, F., Igeño, M.I., Wibberg, D., Roldán, M.D., Sáez, L.P., Hennig, M., Quesada, A., Huertas, M.J., Blom, J., Merchán, F., Escribano, M.P., Jaenicke, S., Estepa, J., Guijo, M.I., Martínez-Luque, M., Macías, D., Szczepanowski, R., Becerra, G., Ramirez, S., Carmona, M.I., Gutiérrez, O., Manso, I., Pühler, A., Castillo, F., Moreno-Vivián, C., Schlüter, A., Blasco, R.: Draft whole genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344. Environmental Microbiology. 15, 253-270 (2013).
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645668 OA
Bogen, C., Al-Dilaimi, A., Albersmeier, A., Wichmann, J., Grundmann, M., Rupp, O., Lauersen, K.J., Blifernez-Klassen, O., Kalinowski, J., Goesmann, A., Mussgnug, J.H., Kruse, O.: Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics. 14, 926 (2013).
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2013 | Bielefelder E-Dissertation | PUB-ID: 2648150 OA
Bogen, C.: Systematic identification of microalgal species for lipid production and genome based molecular characterization of the oleaginous microalga Monoraphidium neglectum. Universität Bielefeld, Bielefeld (2013).
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645192
Gillett, A., Bergman, P., Parsa, R., Bremges, A., Giegerich, R., Jagodic, M.: A Silent Exonic SNP in Kdm3a Affects Nucleic Acids Structure but Does Not Regulate Experimental Autoimmune Encephalomyelitis. Plos One. 8, e81912 (2013).
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645659
Lauersen, K.J., Vanderveer, T.L., Berger, H., Kaluza, I., Mussgnug, J.H., Walker, V.K., Kruse, O.: Ice recrystallization inhibition mediated by a nuclear-expressed and -secreted recombinant ice-binding protein in the microalga Chlamydomonas reinhardtii. Applied Microbiology and Biotechnology. 97, 9763-9772 (2013).
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2650913
Ravin, N.V., Eldarov, M.A., Kadnikov, V.V., Beletsky, A.V., Schneider, J., Mardanova, E.S., Smekalova, E.M., Zvereva, M.I., Dontsova, O.A., Mardanov, A.V., Skryabin, K.G.: Genome sequence and analysis of methylotrophic yeast Hansenula polymorpha DL1. BMC Genomics. 14, : 837 (2013).
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Dissertation | PUB-ID: 2689370
Gorzolka, K.: Spatio-temporal investigation of the barley malting process by proteome, metabolome, and MALDI MS imgaging analyses. Bielefeld (2013).
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2610129
Kessler, N., Bonte, A., Langenkämper, G., Niehaus, K., Goesmann, A., Nattkemper, T.W.: MeltDB 2.0 - Advances of the metabolomics software system. Bioinformatics. 29, 2452-2459 (2013).
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2546244
Wibberg, D., Szczepanowski, R., Eikmeyer, F.G., Pühler, A., Schlüter, A.: The IncF plasmid pRSB225 isolated from a municipal wastewater treatment plant’s on-site preflooder combining antibiotic resistance and putative virulence functions is highly related to virulence plasmids identified in pathogenic E. coli isolates. Plasmid. 69, 127-137 (2013).
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529202
Zakrzewski, M., Bekel, T., Ander, C., Pühler, A., Rupp, O., Stoye, J., Schlüter, A., Goesmann, A.: MetaSAMS - A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets. Journal of Biotechnology. 167, 156-165 (2013).
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2013 | Konferenzbeitrag | Im Druck | PUB-ID: 2538625
Bonte, A., Kessler, N., Nattkemper, T.W., Goesmann, A., Cecile, T., Mäder, P., Niehaus, K., Langenkämper, G.: Einsatz von Protein- und Metabolit-Profiling-Methoden zur Unterscheidung von ökologischem und konventionellem Weizen. Presented at the 12. Wissenschaftstagung Ökologischer Landbau „Ideal und Wirklichkeit – Perspektiven Ökologischer Landbewirtschaftung“, Bonn, Germany (In Press).
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2531660
Lauersen, K.J., Berger, H., Mussgnug, J.H., Kruse, O.: Efficient recombinant protein production and secretion from nuclear transgenes in Chlamydomonas reinhardtii. Journal of Biotechnology. 167, 101-110 (2013).
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2512642 OA
Dörr, D., Thévenin, A., Stoye, J.: Gene family assignment-free comparative genomics. BMC Bioinformatics. 13, S3 (2012).
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