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266 Publikationen

2015 | Dissertation | PUB-ID: 2763163
Wendler, S.: Comprehensive proteome analysis of Actinoplanes sp. SE50/110, the producer of the medically important secondary metabolite acarbose. Bielefeld (2015).
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2759737
Kulis-Horn, R., Persicke, M., Kalinowski, J.: Corynebacterium glutamicum ATP-phosphoribosyl transferases suitable for L-histidine production - Strategies for the elimination of feedback inhibition. Journal of Biotechnology. 206, 26-37 (2015).
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2731076
Dziewit, L., Pyzik, A., Szuplewska, M., Matlakowska, R., Mielnicki, S., Wibberg, D., Schlüter, A., Pühler, A., Bartosik, D.: Diversity and role of plasmids in adaptation of bacteria inhabiting the Lubin copper mine in Poland, an environment rich in heavy metals. Frontiers in Microbiology. 6, : 152 (2015).
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2731292
Tomazetto, G., Wibberg, D., Schlüter, A., Oliveira, V.M.: New FeFe-hydrogenase genes identified in a metagenomic fosmid library from a municipal wastewater treatment plant as revealed by high-throughput sequencing. Research in Microbiology. 166, 9-19 (2015).
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2732884
Fernandes de Brito, L., Bach, E., Kalinowski, J., Rückert, C., Wibberg, D., Passaglia, L., Wendisch, V.F.: Complete genome sequence of Paenibacillus riograndensis SBR5T, a Gram-positive diazotrophic rhizobacterium. Journal of Biotechnology. 207, 30-31 (2015).
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2722001
Schwarzhans, J.P., Cholewa, D., Grimm, P., Beshay, U., Risse, J.M., Friehs, K., Flaschel, E.: Dependency of the fatty acid composition of Euglena gracilis on growth phase and culture conditions. Journal of Applied Phycology. 27, 1389-1399 (2015).
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2706029 OA
Kessler, N., Walter, F., Persicke, M., Albaum, S., Kalinowski, J., Goesmann, A., Niehaus, K., Nattkemper, T.W.: ALLocator: An Interactive Web Platform for the Analysis of Metabolomic LC-ESI-MS Datasets, Enabling Semi-Automated, User-Revised Compound Annotation and Mass Isotopomer Ratio Analysis. PLoS ONE. 9, e113909 (2014).
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2014 | Dissertation | PUB-ID: 2763160
Lauersen, K.J.: Heterologous expression of an ice binding protein from the microalgae Chlamydomonas reinhardtii with an optimized nuclear gene expression system. Bielefeld (2014).
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2678800 OA
Kröber, M., Wibberg, D., Grosch, R., Eikmeyer, F.G., Verwaaijen, B., Chowdhury, S.P., Hartmann, A., Pühler, A., Schlüter, A.: Effect of the strain Bacillus amyloliquefaciens FZB42 on the microbial community in the rhizosphere of lettuce under field conditions analyzed by whole metagenome sequencing. Frontiers in Microbiology. 5, : 252 (2014).
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2687033 OA
Dörr, D., Stoye, J., Böcker, S., Jahn, K.: Identifying Gene Clusters by Discovering Common Intervals in Indeterminate Strings. BMC Genomics. 15, S2 (2014).
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685362 OA
Lechner, M., Hernandez-Rosales, M., Dörr, D., Wieseke, N., Thévenin, A., Stoye, J., Hartmann, R.K., Prohaska, S.J., Stadler, P.F.: Orthology Detection Combining Clustering and Synteny for Very Large Datasets. PLoS ONE. 9, e105015 (2014).
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2682811
Lübke, N.-C., Wolf, T., Braun, R., Rückert, C., Kalinowski, J.: Vom Schärfesensor zur mikrobiellen Brennstoffzelle. BIOspektrum. 20, 468-469 (2014).
PUB | DOI
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2679399
Neshat, A., Mentz, A., Rückert, C., Kalinowski, J.: Transcriptome sequencing revealed the transcriptional organization at ribosome-mediated attenuation sites in Corynebacterium glutamicum and identified a novel attenuator involved in aromatic amino acid biosynthesis. Journal of biotechnology. 190, 55-63 (2014).
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Bielefelder E-Dissertation | PUB-ID: 2723541 OA
Ander, C.: Bioinformatic methods for the analysis and comparison of metagenomes and metatranscriptomes. Universitätsbibliothek Bielefeld, Bielefeld (2014).
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2014 | Dissertation | PUB-ID: 2717323
Zahoor ul Hassan, A.: Metabolic engineering of Corynebacterium glutamicum for glycolate production. Bielefeld (2014).
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2717549
Geizecler, T., Hahnke, S., Maus, I., Wibberg, D., Pühler, A., Schlüter, A., Klocke, M.: Complete genome sequence of Peptoniphilus sp strain ING2-D1G isolated from a mesophilic lab-scale completely stirred tank reactor utilizing maize silage in co-digestion with pig and cattle manure for biomethanation. Journal of Biotechnology. 192, 59-61 (2014).
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2014 | Bielefelder E-Dissertation | PUB-ID: 2770185 OA
Nolla Ardevol, V.: Anaerobic digestion of the microalga Spirulina at alkaline conditions (pH~10; 2.0 M Na+): biogas production and metagenome analysis. Bielefeld University, Bielefeld (2014).
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2674387
Hilker, R., Stadermann, K.B., Doppmeier, D., Kalinowski, J., Stoye, J., Straube, J., Winnebald, J., Goesmann, A.: ReadXplorer - Visualization and Analysis of Mapped Sequences. Bioinformatics. 30, 2247-2254 (2014).
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2665038
Schwientek, P., Neshat, A., Kalinowski, J., Klein, A., Rückert, C., Schneiker-Bekel, S., Wendler, S., Stoye, J., Pühler, A.: Improving the genome annotation of the acarbose producer Actinoplanes sp. SE50/110 by sequencing enriched 5'-ends of primary transcripts. Journal of Biotechnology. 190, 85-95 (2014).
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645148
Kulis-Horn, R., Persicke, M., Kalinowski, J.: Histidine biosynthesis, its regulation and biotechnological application in Corynebacterium glutamicum. Microbial Biotechnology. 7, 5-25 (2014).
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Bielefelder E-Dissertation | PUB-ID: 2718661 OA
Pfeifer-Sancar, K.: Entwicklung der Transkriptomsequenzierung und Anwendung zur Analyse des Transkriptoms von Corynebacterium glutamicum. Universität Bielefeld, Bielefeld (2014).
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2656819
Wippermann, A., Klausing, S., Rupp, O., Albaum, S., Büntemeyer, H., Noll, T., Hoffrogge, R.: Establishment of a CpG island microarray for analyses of genome-wide DNA methylation in Chinese hamster ovary cells. Applied Microbiology and Biotechnology. 98, 579-589 (2014).
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685988
Jakobi, T., Brinkrolf, K., Tauch, A., Noll, T., Stoye, J., Pühler, A., Goesmann, A.: Discovery of transcription start sites in the Chinese hamster genome by next-generation RNA sequencing. Journal of Biotechnology. 190, 64-75 (2014).
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2690300
Kölling, J., Zurowietz, M., Nattkemper, T.W.: Interactive Exploration of Spatial Distribution in Mass Spectrometry Imaging. Presented at the 4th Symposium on Biological Data Visualization (BioVis), Boston, MA, USA (2014).
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2693296
Walter, F., Albersmeier, A., Kalinowski, J., Rückert, C.: Complete Genome Sequence of Corynebacterium casei LMG S-19264T (=DSM 44701T), isolated from a smear-ripened cheese. Journal of Biotechnology. 189, 76-77 (2014).
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Bielefelder E-Dissertation | PUB-ID: 2682078 OA
Freudenau, I.: ColE1-Plasmidproduktion in Escherichia coli: Simulation und Experiment. Universitätsbibliothek, Bielefeld (2014).
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676552
Becker, J., Timmermann, C., Rupp, O., Albaum, S., Brinkrolf, K., Goesmann, A., Pühler, A., Tauch, A., Noll, T.: Transcriptome analyses of CHO cells with the next-generation microarray CHO41K: Development and validation by analysing the influence of the growth stimulating substance IGF-1 substitute LongR(3.). Journal of biotechnology. 178, 23-31 (2014).
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689746
Irla, M., Neshat, A., Winkler, A., Albersmeier, A., Heggeset, T.M., Brautaset, T., Kalinowski, J., Wendisch, V.F., Rückert, C.: Complete genome sequence of *Bacillus methanolicus* MGA3, a thermotolerant amino acid producing methylotroph. Journal of Biotechnology. 188, 110-111 (2014).
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2699819
Schatschneider, S., Huber, C., Neuweger, H., Watt, T., Pühler, A., Eisenreich, W., Wittmann, C., Niehaus, K., Vorhölter, F.-J.: Metabolic flux pattern of glucose utilization by Xanthomonas campestris pv. campestris: prevalent role of the Entner-Doudoroff pathway and minor fluxes through the pentose phosphate pathway and glycolysis. Molecular BioSystems. 10, 2663-2676 (2014).
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2656773
Rupp, O., Becker, J., Brinkrolf, K., Timmermann, C., Borth, N., Pühler, A., Noll, T., Goesmann, A.: Construction of a Public CHO Cell Line Transcript Database Using Versatile Bioinformatics Analysis Pipelines. PLoS ONE. 9, e85568 (2014).
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2658490
Dziewit, L., Czarnecki, J., Wibberg, D., Radlinska, M., Mrozek, P., Szymczak, M., Schlüter, A., Pühler, A., Bartosik, D.: Architecture and functions of a multipartite genome of the methylotrophic bacterium Paracoccus aminophilus JCM 7686, containing primary and secondary chromids. BMC Genomics. 15, : 124 (2014).
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2643915
Zahoor ul Hassan, A., Otten, A., Wendisch, V.F.: Metabolic engineering of *Corynebacterium glutamicum* for glycolate production. Journal of Biotechnology. 192, 366-375 (2014).
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2693310
Wibberg, D., Jelonek, L., Rupp, O., Kröber, M., Goesmann, A., Grosch, R., Pühler, A., Schlüter, A.: Transcriptome analysis of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 applying high-throughput sequencing of expressed sequence tags (ESTs). Fungal Biology. 118, 800-813 (2014).
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2693409
Fredrich, E., Ander, C., Stoye, J., Brune, I., Tauch, A.: Metatranskriptomik der Mikrobiota aus der menschlichen Achselhöhle. BIOspektrum. 20, 294-296 (2014).
PUB | DOI
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2694915
Hahnke, S., Wibberg, D., Geizecler, T., Pühler, A., Klocke, M., Schlüter, A.: Whole genome sequence of Clostridium bornimense strain M2/40 isolated from a lab-scale mesophilic two-phase biogas reactor digesting maize silage and wheat straw. Journal of Biotechnology. 184, 199-200 (2014).
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2651944
Tielen, P., Wibberg, D., Blom, J., Rosin, N., Meyer, A.-K., Bunk, B., Schobert, M., Tüpker, R., Schatschneider, S., Rückert, C., Albersmeier, A., Goesmann, A., Vorhölter, F.-J., Jahn, D., Pühler, A.: Genome Sequence of the Small-Colony Variant Pseudomonas aeruginosa MH27, Isolated from a Chronic Urethral Catheter Infection. Genome announcements. 2, (2014).
PUB | DOI | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676806
Busche, T., Pfeifer-Sancar, K., Rückert, C., Kalinowski, J.: Identifizierung von Promotoren in Corynebacterium glutamicum. BIOspektrum. 20, 284-287 (2014).
PUB | DOI
 
2014 | Konferenzbeitrag | Im Druck | PUB-ID: 2690335
Rathke, M., Kölling, J., Gorzolka, K., Niehaus, K., Nattkemper, T.W.: Interactive and dynamic web-based visual exploration of high dimensional bioimages with real time clustering. Presented at the German Conference on Bioinformatics (GCB), Bielefeld, Germany (In Press).
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2014 | Kurzbeitrag Konferenz / Poster | Im Druck | PUB-ID: 2690436 OA
Kölling, J., Gorzolka, K., Niehaus, K., Nattkemper, T.W.: Spatio-temporal analysis of metabolite profiles during barley germination. Presented at the German Conference on Bioinformatics (GCB), Bielefeld, Germany (In Press).
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2014 | Dissertation | PUB-ID: 2763157
Neshat, A.: Transcriptome analysis of industrially relevant bacteria by next-generation sequencing. Bielefeld (2014).
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2644144
Peters-Wendisch, P., Götker, S., Heider, S., Komati Reddy, G., Nguyen, A.Q., Stansen, K.C., Wendisch, V.F.: Engineering biotin prototrophic *Corynebacterium glutamicum* strains for amino acid, diamine and carotenoid production. Journal of Biotechnology. 192, 346-354 (2014).
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685861
Torres Tejerizo, G., Pistorio, M., Althabegoiti, M.J., Cervantes, L., Wibberg, D., Schlüter, A., Pühler, A., Lagares, A., Romero, D., Brom, S.: Rhizobial plasmid pLPU83a is able to switch between different transfer machineries depending on its genomic background. FEMS Microbiology Ecology. 88, 565-578 (2014).
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2690322
Kölling, J., Zurowietz, M., Nattkemper, T.W.: Interactive Exploration of Spatial Distribution in Mass Spectrometry Imaging. Presented at the 22nd Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Boston, MA, USA (2014).
PUB | Download (ext.)
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2672926 OA
Wibberg, D., Tielen, P., Blom, J., Rosin, N., Schobert, M., Tüpker, R., Schatschneider, S., Spilker, D., Albersmeier, A., Goesmann, A., Vorhölter, F.-J., Pühler, A., Jahn, D.: Genome Sequence of the Acute Urethral Catheter Isolate Pseudomonas aeruginosa MH38. Genome announcements. 2, : e00161-14 (2014).
PUB | PDF | DOI | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2675608
Wibberg, D., Torres Tejerizo, G., Florencia Del Papa, M., Martini, C., Pühler, A., Lagares, A., Schlüter, A., Pistorio, M.: Genome sequence of the acid-tolerant strain Rhizobium sp LPU83. Journal of Biotechnology. 176, 40-41 (2014).
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2723909
Nguyen, A.Q., Schneider, J., Wendisch, V.F.: Identification of engineering targets for improving putrescine production by Corynebacterium glutamicum. New Biotechnology. 31, S166-S166 (2014).
PUB | DOI | WoS
 
2014 | Bielefelder E-Dissertation | PUB-ID: 2703966 OA
Jakobi, T.: Bioinformatic methods for eukaryotic RNA-Seq-based promoter identification. Bielefeld University, Bielefeld (2014).
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2717539
Maus, I., Stantscheff, R., Wibberg, D., Stolze, Y., Winkler, A., Pühler, A., König, H., Schlüter, A.: Complete genome sequence of the methanogenic neotype strain Methanobacterium formicicum MFT. Journal of Biotechnology. 192, 40-41 (2014).
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2717558
Koeck, D.E., Wibberg, D., Maus, I., Winkler, A., Albersmeier, A., Zverlov, V.V., Pühler, A., Schwarz, W.H., Liebl, W., Schlüter, A.: First draft genome sequence of the amylolytic Bacillus thermoamylovorans wild-type strain 1A1 isolated from a thermophilic biogas plant. Journal of Biotechnology. 192, 154-155 (2014).
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Dissertation | Veröffentlicht | PUB-ID: 2901400
Schulte, F.: Molecular characterisation of cysB, transcriptional co-regulator of sulfur metabolism and xanthan biosynthesis in Xanthomonas campestris pv. campestris B100. Bielefeld (2014).
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