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266 Publikationen

2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2938413
Schaffert, L., Schneiker-Bekel, S., Dymek, S., Droste, J., Persicke, M., Busche, T., Brandt, D., Pühler, A. & Kalinowski, J. (2019). Essentiality of the Maltase AmlE in Maltose Utilization and Its Transcriptional Regulation by the Repressor AmlR in the Acarbose-Producing Bacterium Actinoplanes sp. SE50/110. Frontiers in Microbiology, 10: 2448. Frontiers Media. doi:10.3389/fmicb.2019.02448.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907915
Taniguchi, H., Henke, N.A., Heider, S. & Wendisch, V.F. (2017). Overexpression of the primary sigma factor gene sigA improved carotenoid production by Corynebacterium glutamicum: application to production of beta-carotene and the non-native linear C50 carotenoid bisanhydrobacterioruberin. Metabolic Engineering Communications, 4, 1-11. Elsevier. doi:10.1016/j.meteno.2017.01.001.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909045
Henke, N.A., Heider, S., Hannibal, S., Wendisch, V.F. & Peters-Wendisch, P. (2017). Isoprenoid pyrophosphate-dependent transcriptional regulation of carotenogenesis in Corynebacterium glutamicum. Frontiers in Microbiology, 8: 633. doi:10.3389/fmicb.2017.00633.
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2017 | Sammelwerksbeitrag | PUB-ID: 2908205
Henke, N.A., Peters-Wendisch, P. & Wendisch, V.F. (2017). Carotenoid production by Corynebacterium: the workhorse of industrial amino acid production as host for production of a broad spectrum of C40 and C50 carotenoids. In D. Cvetković (Hrsg.), Carotenoids (S. 159-173). Rijeka, Croatia: IN TECH d.o.o. doi:10.5772/67631.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2910571
Jorge, J., Perez, F. & Wendisch, V.F. (2017). A new metabolic route for the fermentative production of 5-aminovalerate from glucose and alternative carbon sources. Bioresource Technology, 245(SI), 1701–1709. Elsevier. doi:10.1016/j.biortech.2017.04.108.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2910629
Perez, F., Ziert, C., Risse, J.M. & Wendisch, V.F. (2017). Improved fermentative production of the compatible solute ectoine by Corynebacterium glutamicum from glucose and alternative carbon sources. J Biotechnol, 258, 59-68. doi:10.1016/j.jbiotec.2017.04.039.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2906474
Jorge, J., Nguyen, A.Q., Perez, F., Kind, S. & Wendisch, V.F. (2017). Improved fermentative production of gamma-aminobutyric acid via the putrescine route: systems metabolic engineering for production from glucose, amino sugars and xylose. Biotechnology and Bioengineering, 114(4), 862-873. Wiley. doi:10.1002/bit.26211.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908307
Perez, F., Risse, J.M., Friehs, K. & Wendisch, V.F. (2017). Fermentative production of L-pipecolic acid from glucose and alternative carbon sources. Biotechnology Journal, 12(7): 1600646. Wiley. doi:10.1002/biot.201600646.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2906606
Fernandes de Brito, L., Irla, M., Walter, T. & Wendisch, V.F. (2017). Magnesium-aminoclay-based transformation of Paenibacillus riograndensis and Paenibacillus polymyxa and development of tools for gene expression. Applied Microbiology and Biotechnology, 101(2), 735-747. doi:10.1007/s00253-016-7999-1.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911022
Corinti, D., Coletti, C., Re, N., Piccirillo, S., Giampa, M., Crestoni, M.E. & Fornarini, S. (2017). Hydrolysis of cis-and transplatin: structure and reactivity of the aqua complexes in a solvent free environment. RSC ADVANCES, 7(26), 15877-15884. Royal Soc Chemistry. doi:10.1039/c7ra01182b.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907021
Irla, M., Naerdal, I., Brautaset, T. & Wendisch, V.F. (2017). Methanol-based γ-aminobutyric acid (GABA) production by genetically engineered Bacillus methanolicus strains. Industrial Crops and Products, 106(SI), 12-20. doi:10.1016/j.indcrop.2016.11.050.
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2017 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2905383
Heider, S., Henke, N.A., Peters-Wendisch, P. & Wendisch, V.F. (2017). C50 carotenoids: Occurrence, biosynthesis, glycosylation and metabolic engineering for their overproduction. In O.V. Singh (Hrsg.), Bio-pigmentation and Biotechnology implications (S. 107-126). Hoboken, NJ, USA: John Wiley & Sons, Inc.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908286
Nærdal, I., Netzer, R., Irla, M., Krog, A., Heggeset, T.M.B., Wendisch, V.F. & Brautaset, T. (2017). L-lysine Production by Bacillus methanolicus: Genome-Based Mutational Analysis and L-lysine Secretion Engineering. Journal of Biotechnology, 244, 25-33. doi:10.1016/j.jbiotec.2017.02.001.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904856
Lauersen, K.J., Baier, T., Wichmann, J., Wördenweber, R., Mussgnug, J.H., Hübner, W., Huser, T. & Kruse, O. (2016). Efficient phototrophic production of a high-value sesquiterpenoid from the eukaryotic microalga Chlamydomonas reinhardtii. Metabolic Engineering, 38, 331-343. Elsevier BV. doi:10.1016/j.ymben.2016.07.013.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904976
Blifernez-Klassen, O., Wibberg, D., Winkler, A., Blom, J., Goesmann, A., Kalinowski, J. & Kruse, O. (2016). Complete Chloroplast and Mitochondrial Genome Sequences of the Hydrocarbon Oil-Producing Green MicroalgaBotryococcus brauniiRace B (Showa). Genome Announcements, 4(3): e00524-16. American Society for Microbiology. doi:10.1128/genomea.00524-16.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904970
Maus, I., Wibberg, D., Winkler, A., Pühler, A., Schnürer, A. & Schlüter, A. (2016). Complete Genome Sequence of the MethanogenMethanoculleus bourgensisBA1 Isolated from a Biogas Reactor. Genome Announcements, 4(3): e00568-16. American Society for Microbiology. doi:10.1128/genomea.00568-16.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905177
Stadermann, K.B., Holtgräwe, D. & Weisshaar, B. (2016). Chloroplast genome sequence of Arabidopsis thaliana accession Landsberg erecta assembled from Single-Molecule, Real-Time sequencing data. Genome Announcements, 4(5): e00975-16. American Soc. for Microbiology. doi:10.1128/genomeA.00975-16.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904978
Koeck, D.E., Maus, I., Wibberg, D., Winkler, A., Zverlov, V.V., Liebl, W., Pühler, A., Schwarz, W.H. & Schlüter, A. (2016). Draft Genome Sequence of Propionisporasp. Strain 2/2-37, a New Xylan-Degrading Bacterium Isolated from a Mesophilic Biogas Reactor. Genome Announcements, 4(3), e00609-16. American Society for Microbiology. doi:10.1128/genomea.00609-16.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904993
Koeck, D.E., Maus, I., Wibberg, D., Winkler, A., Zverlov, V.V., Liebl, W., Pühler, A., Schwarz, W.H. & Schlüter, A. (2016). Complete Genome Sequence of Herbinix luporumSD1D, a New Cellulose-Degrading Bacterium Isolated from a Thermophilic Biogas Reactor. Genome Announcements, 4(4), e00687-16. American Society for Microbiology. doi:10.1128/genomea.00687-16.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904325
Henke, N.A., Heider, S., Peters-Wendisch, P. & Wendisch, V.F. (2016). Production of the marine carotenoid astaxanthin by metabolically engineered Corynebacterium glutamicum. Marine Drugs, 14: 124. MDPI, Basel, Switzerland. doi:10.3390/md14070124.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904860
Wendisch, V.F., Fernandes de Brito, L., Gil Lopez, M., Hennig, G., Pfeifenschneider, J., Sgobba, E. & Veldmann, K.H. (2016). The flexible feedstock concept in Industrial Biotechnology: metabolic engineering of Escherichia coli, Corynebacterium glutamicum, Pseudomonas, Bacillus and yeast strains for access to alternative carbon sources. Journal of Biotechnology, 234, 139-157. Elsevier. doi:10.1016/j.jbiotec.2016.07.022.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901413
Gorzolka, K., Kölling, J., Nattkemper, T.W. & Niehaus, K. (2016). Spatio-Temporal Metabolite Profiling of the Barley Germination Process by MALDI MS Imaging. PLOS ONE, 11(3): 0150208. Public Library of Science (PLoS). doi:10.1371/journal.pone.0150208.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904815
Stolze, Y., Bremges, A., Rumming, M., Henke, C., Maus, I., Pühler, A., Sczyrba, A. & Schlüter, A. (2016). Identification and genome reconstruction of abundant distinct taxa in microbiomes from one thermophilic and three mesophilic production-scale biogas plants. Biotechnology for Biofuels, 9: 156. Springer Nature. doi:10.1186/s13068-016-0565-3.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2906597
Jaeger, D., Pilger, C., Hachmeister, H., Oberländer, E., Wördenweber, R., Wichmann, J., Mussgnug, J.H., Huser, T. & Kruse, O. (2016). Label-free in vivo analysis of intracellular lipid droplets in the oleaginous microalga Monoraphidium neglectum by coherent Raman scattering microscopy. Scientific Reports, 6: 35340. Springer Nature. doi:10.1038/srep35340.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907679
Schwarzhans, J.P., Wibberg, D., Winkler, A., Luttermann, T., Kalinowski, J. & Friehs, K. (2016). Non-canonical integration events in Pichia pastoris encountered during standard transformation analysed with genome sequencing. Scientific Reports, 6: 38952. Springer Nature. doi:10.1038/srep38952.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903655
Schwarzhans, J.P., Wibberg, D., Winkler, A., Luttermann, T., Kalinowski, J. & Friehs, K. (2016). Integration event induced changes in recombinant protein productivity in Pichia pastoris discovered by whole genome sequencing and derived vector optimization. Microbial Cell Factories, 15: 84. BioMedCentral. doi:10.1186/s12934-016-0486-7.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905495
Irla, M., Heggeset, T.M., Naerdal, I., Paul, L., Haugen, T., Le, S.B., Brautaset, T. & Wendisch, V.F. (2016). Genome-based genetic tool development for Bacillus methanolicus: theta- and rolling circle-replicating plasmids for inducible gene expression and application to methanol-based cadaverine production. Frontiers in Microbiology, 7: 1481. Frontiers Media. doi:10.3389/fmicb.2016.01481.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903660
Steffens, T., Vorhölter, F.-J., Giampa, M., Hublik, G., Pühler, A. & Niehaus, K. (2016). The influence of a modified lipopolysaccharide O-antigen on the biosynthesis of xanthan in Xanthomonas campestris pv. campestris B100. BMC Microbiology, 16: 93. Biomed Central. doi:10.1186/s12866-016-0710-y.
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2016 | Bielefelder E-Dissertation | PUB-ID: 2902049
Dörr, D. (2016). Gene family-free genome comparison. Bielefeld: Universität Bielefeld.
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2016 | Bielefelder E-Dissertation | PUB-ID: 2904907
Ortseifen, V. (2016). Genombasierte Modellbildung zur Biosynthese von Acarviostatin-Metaboliten in drei Actinoplanes sp. SE50/110-Stämmen. Bielefeld: Universität Bielefeld.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907439
Lenta, B.N., Ngatchou, J., Frese, M., Ladoh-Yemeda, F., Voundi, S., Nardella, F., Michalek, C., Wibberg, D., Ngouela, S., Tsamo, E., Kaiser, M., Kalinowski, J. & Sewald, N. (2016). Purpureone, an antileishmanial ergochrome from the endophytic fungus Purpureocillium lilacinum. ZEITSCHRIFT FUR NATURFORSCHUNG SECTION B-A JOURNAL OF CHEMICAL SCIENCES, 71(11), 1159-1167. Walter De Gruyter Gmbh. doi:10.1515/znb-2016-0128.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2906183
Schulte, F., Flaschel, E. & Niehaus, K. (2016). Proteome-Based Analysis of Colloidal Instability Enables the Detection of Haze-Active Proteins in Beer. Journal of Agricultural and Food Chemistry, 64(35), 6752-6761. American Chemical Soc. doi:10.1021/acs.jafc.6b02467.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2906715
Koeck, D.E., Wibberg, D., Maus, I., Winkler, A., Albersmeier, A., Zverlov, V.V., Liebl, W., Pühler, A., Schwarz, W.H. & Schlüter, A. (2016). Corrigendum to "Complete genome sequence of the cellulolytic thermophile Ruminoclostridium cellulosi wild-type strain DG5 isolated from a thermophilic biogas plant (J. Biotechnol. 188 (2014) 136–137)")". Journal of Biotechnology, 237, 35. Elsevier Science Bv. doi:10.1016/j.jbiotec.2016.08.020.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905630
Gren, T., Ortseifen, V., Wibberg, D., Schneiker-Bekel, S., Bednarz, H., Niehaus, K., Zemke, T., Persicke, M., Pühler, A. & Kalinowski, J. (2016). Genetic engineering in Actinoplanes sp SE50/110-development of an intergeneric conjugation system for the introduction of actinophage-based integrative vectors. Journal of Biotechnology, 232, 79-88. Gehalten auf der 10th CeBiTec Symposium on Bioinformatics for Biotechnology and Biomedicine, Elsevier Science BV. doi:10.1016/j.jbiotec.2016.05.012.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907633
Lux, M., Krüger, J., Rinke, C., Maus, I., Schlüter, A., Woyke, T., Sczyrba, A. & Hammer, B. (2016). acdc – Automated Contamination Detection and Confidence estimation for single-cell genome data. BMC Bioinformatics, 17: 543. Springer Nature. doi:10.1186/s12859-016-1397-7.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904047
Eberhardt, D., Jorge, J., Perez, F., Taniguchi, H. & Wendisch, V.F. (2016). Roles of export genes cgmA and lysE for the production of L-arginine and L-citrulline by Corynebacterium glutamicum. Appl Microbiol Biotechnol, 100(19), 8465-8474. Springer. doi:10.1007/s00253-016-7695-1.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904691
Martini, M.C., Wibberg, D., Lozano, M., Torres Tejerizo, G., Albicoro, F.J., Jaenicke, S., van Elsas, J.D., Petroni, A., Garcillan-Barcia, M.P., de la Cruz, F., Schlüter, A., Pühler, A., Pistorio, M., Lagares, A. & Del Papa, M.F. (2016). Genomics of high molecular weight plasmids isolated from an on-farm biopurification system. Scientific Reports, 6: 28284. Nature Publishing Group. doi:10.1038/srep28284.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904704
Celis, J.S., Wibberg, D., Winkler, A., Wilke, T. & Kalinowski, J. (2016). Complete mitochondrial genome of the scleractinian coral Porites rus. Mitochondrial DNA, 27(5), 3695-3696. Taylor & Francis Ltd. doi:10.3109/19401736.2015.1079860.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903489
Maus, I., Cibis, K.G., Bremges, A., Stolze, Y., Wibberg, D., Tomazetto, G., Blom, J., Sczyrba, A., König, H., Pühler, A. & Schlüter, A. (2016). Genomic characterization of Defluviitoga tunisiensis L3, a key hydrolytic bacterium in a thermophilic biogas plant and its abundance as determined by metagenome fragment recruitment. Journal of Biotechnology, 232, 50-60. Elsevier BV. doi:10.1016/j.jbiotec.2016.05.001.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903302
Wibberg, D., Bremges, A., Dammann-Kalinowski, T., Maus, I., Igeño, M.I., Vogelsang, R., König, C., Luque-Almagro, V.M., Roldán, M.D., Sczyrba, A., Moreno-Vivián, C., Blasco, R., Pühler, A. & Schlüter, A. (2016). Finished genome sequence and methylome of the cyanide-degrading Pseudomonas pseudoalcaligenes strain CECT5344 as resolved by single-molecule real-time sequencing. Journal of Biotechnology, 232, 61-68. Elsevier BV. doi:10.1016/j.jbiotec.2016.04.008.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2902126
Liebe, S., Wibberg, D., Winkler, A., Pühler, A., Schlüter, A. & Varrelmann, M. (2016). Taxonomic analysis of the microbial community in stored sugar beets using high-throughput sequencing of different marker genes. FEMS Microbiology Ecology, 92(2): fiw004. Oxford Univ Press. doi:10.1093/femsec/fiw004.
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2016 | Kurzbeitrag Konferenz / Poster | PUB-ID: 2905827
Weisshaar, B., Himmelbauer, H., Schmidt, T., Holtgräwe, D., Minoche, A.E., Dohm, J., Stracke, R., Zakrzewski, F., Parol-Kryger, R., Stadermann, K.B., Schneider, J., Rosleff Sörensen, T., Kraft, T. & Schulz, B. (2016). Sugar Beet BeetMap-3, and Steps to Improve the Genome Assembly and Genome Sequence Annotation (W875). Gehalten auf der Plant and Animal Genome XXIV Conference.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905170
Hilker, R., Stadermann, K.B., Schwengers, O., Anisiforov, E., Jaenicke, S., Weisshaar, B., Zimmermann, T. & Goesmann, A. (2016). ReadXplorer 2 - detailed read mapping analysis and visualization from one single source. Bioinformatics, 32(24), 3702-3708. doi:10.1093/bioinformatics/btw541.
PUB | PDF | DOI | WoS | PubMed | Europe PMC | NCBI BioProject
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905505
Wolf, T., Gren, T., Thieme, E., Wibberg, D., Zemke, T., Pühler, A. & Kalinowski, J. (2016). Targeted genome editing in the rare actinomycete Actinoplanes sp SE50/110 by using the CRISPR/Cas9 System. Journal of Biotechnology, 231, 122-128. Elsevier Science Bv. doi:10.1016/j.jbiotec.2016.05.039.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905632
Walter, F., Grenz, S., Ortseifen, V., Persicke, M. & Kalinowski, J. (2016). Corynebacterium glutamicum ggtB encodes a functional gamma-glutamyl transpeptidase with gamma-glutamyl dipeptide synthetic and hydrolytic activity. Journal of Biotechnology, 232, 99-109. Gehalten auf der 10th CeBiTec Symposium on Bioinformatics for Biotechnology and Biomedicine, Elsevier Science Bv. doi:10.1016/j.jbiotec.2015.10.019.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903593
Jorge, J., Leggewie, C. & Wendisch, V.F. (2016). A new metabolic route for the production of gamma-aminobutyric acid by Corynebacterium glutamicum. Amino Acids, 48(11), 2519-2531. doi:10.1007/s00726-016-2272-6.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903776
Perez, F., Peters-Wendisch, P. & Wendisch, V.F. (2016). Engineering Corynebacterium glutamicum for fast production of L-lysine and L-pipecolic acid. Appl. Microbiol. Biotechnol., 100(18), 8075-8090. Springer. doi:10.1007/s00253-016-7682-6.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901989
Wendisch, V.F., Jorge, J., Perez, F. & Sgobba, E. (2016). Updates on Industrial Production of Amino Acids using Corynebacterium glutamicum. World J Microbiol Biotechnol, 32(6): 105. Springer. doi:10.1007/s11274-016-2060-1.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900943
Langenkämper, D., Jakobi, T., Feld, D., Jelonek, L., Goesmann, A. & Nattkemper, T.W. (2016). Comparison of Acceleration Techniques for Selected Low-Level Bioinformatics Operations. Frontiers in Genetics, 7: 5. Frontiers Media SA. doi:10.3389/fgene.2016.00005.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901729
Bremges, A., Singer, E., Woyke, T. & Sczyrba, A. (2016). MeCorS: Metagenome-enabled error correction of single cell sequencing reads. Bioinformatics, 32(14), 2199-2201. Oxford University Press (OUP). doi:10.1093/bioinformatics/btw144.
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