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266 Publikationen

2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2938413 OA
Schaffert, Lena, Schneiker-Bekel, Susanne, Dymek, Saskia, Droste, Julian, Persicke, Marcus, Busche, Tobias, Brandt, David, Pühler, Alfred, and Kalinowski, Jörn. 2019. “Essentiality of the Maltase AmlE in Maltose Utilization and Its Transcriptional Regulation by the Repressor AmlR in the Acarbose-Producing Bacterium Actinoplanes sp. SE50/110”. Frontiers in Microbiology 10: 2448.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909045 OA
Henke, Nadja Alina, Heider, Sabine, Hannibal, Silvin, Wendisch, Volker F., and Peters-Wendisch, Petra. 2017. “Isoprenoid pyrophosphate-dependent transcriptional regulation of carotenogenesis in Corynebacterium glutamicum”. Frontiers in Microbiology 8: 633.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907915 OA
Taniguchi, Hironori, Henke, Nadja Alina, Heider, Sabine, and Wendisch, Volker F. 2017. “Overexpression of the primary sigma factor gene sigA improved carotenoid production by Corynebacterium glutamicum: application to production of beta-carotene and the non-native linear C50 carotenoid bisanhydrobacterioruberin”. Metabolic Engineering Communications 4: 1-11.
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2017 | Sammelwerksbeitrag | PUB-ID: 2908205 OA
Henke, Nadja Alina, Peters-Wendisch, Petra, and Wendisch, Volker F. 2017. “Carotenoid production by Corynebacterium: the workhorse of industrial amino acid production as host for production of a broad spectrum of C40 and C50 carotenoids”. In Carotenoids, ed. Dragan Cvetković, 1st ed., 159-173. Rijeka, Croatia: IN TECH d.o.o.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2910571
Jorge, João, Perez, Fernando, and Wendisch, Volker F. 2017. “A new metabolic route for the fermentative production of 5-aminovalerate from glucose and alternative carbon sources”. Bioresource Technology 245 (SI): 1701–1709.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2910629
Perez, Fernando, Ziert, Christian, Risse, Joe Max, and Wendisch, Volker F. 2017. “Improved fermentative production of the compatible solute ectoine by Corynebacterium glutamicum from glucose and alternative carbon sources”. J Biotechnol 258: 59-68.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2906474
Jorge, João, Nguyen, Anh Quynh, Perez, Fernando, Kind, Stefanie, and Wendisch, Volker F. 2017. “Improved fermentative production of gamma-aminobutyric acid via the putrescine route: systems metabolic engineering for production from glucose, amino sugars and xylose”. Biotechnology and Bioengineering 114 (4): 862-873.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908307
Perez, Fernando, Risse, Joe Max, Friehs, Karl, and Wendisch, Volker F. 2017. “Fermentative production of L-pipecolic acid from glucose and alternative carbon sources”. Biotechnology Journal 12 (7): 1600646.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2906606
Fernandes de Brito, Luciana, Irla, Marta, Walter, Tatjana, and Wendisch, Volker F. 2017. “Magnesium-aminoclay-based transformation of Paenibacillus riograndensis and Paenibacillus polymyxa and development of tools for gene expression”. Applied Microbiology and Biotechnology 101 (2): 735-747.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911022
Corinti, Davide, Coletti, Cecilia, Re, Nazzareno, Piccirillo, Susanna, Giampa, Marco, Crestoni, Maria Elisa, and Fornarini, Simonetta. 2017. “Hydrolysis of cis-and transplatin: structure and reactivity of the aqua complexes in a solvent free environment”. RSC ADVANCES 7 (26): 15877-15884.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907021
Irla, Marta, Naerdal, Ingemar, Brautaset, Trygve, and Wendisch, Volker F. 2017. “Methanol-based γ-aminobutyric acid (GABA) production by genetically engineered Bacillus methanolicus strains”. Industrial Crops and Products 106 (SI): 12-20.
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2017 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2905383
Heider, Sabine, Henke, Nadja Alina, Peters-Wendisch, Petra, and Wendisch, Volker F. 2017. “C50 carotenoids: Occurrence, biosynthesis, glycosylation and metabolic engineering for their overproduction”. In Bio-pigmentation and Biotechnology implications, ed. Om V. Singh, 107-126. Hoboken, NJ, USA: John Wiley & Sons, Inc.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908286
Nærdal, Ingemar, Netzer, Roman, Irla, Marta, Krog, Anne, Heggeset, Tonje Marita Bjerkan, Wendisch, Volker F., and Brautaset, Trygve. 2017. “L-lysine Production by Bacillus methanolicus: Genome-Based Mutational Analysis and L-lysine Secretion Engineering”. Journal of Biotechnology 244: 25-33.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904856 OA
Lauersen, Kyle J., Baier, Thomas, Wichmann, Julian, Wördenweber, Robin, Mussgnug, Jan H., Hübner, Wolfgang, Huser, Thomas, and Kruse, Olaf. 2016. “Efficient phototrophic production of a high-value sesquiterpenoid from the eukaryotic microalga Chlamydomonas reinhardtii”. Metabolic Engineering 38: 331-343.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904976 OA
Blifernez-Klassen, Olga, Wibberg, Daniel, Winkler, Anika, Blom, Jochen, Goesmann, Alexander, Kalinowski, Jörn, and Kruse, Olaf. 2016. “Complete Chloroplast and Mitochondrial Genome Sequences of the Hydrocarbon Oil-Producing Green MicroalgaBotryococcus brauniiRace B (Showa)”. Genome Announcements 4 (3): e00524-16.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904970 OA
Maus, Irena, Wibberg, Daniel, Winkler, Anika, Pühler, Alfred, Schnürer, Anna, and Schlüter, Andreas. 2016. “Complete Genome Sequence of the MethanogenMethanoculleus bourgensisBA1 Isolated from a Biogas Reactor”. Genome Announcements 4 (3): e00568-16.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905177 OA
Stadermann, Kai Bernd, Holtgräwe, Daniela, and Weisshaar, Bernd. 2016. “Chloroplast genome sequence of Arabidopsis thaliana accession Landsberg erecta assembled from Single-Molecule, Real-Time sequencing data”. Genome Announcements 4 (5): e00975-16.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904978 OA
Koeck, Daniela E., Maus, Irena, Wibberg, Daniel, Winkler, Anika, Zverlov, Vladimir V., Liebl, Wolfgang, Pühler, Alfred, Schwarz, Wolfgang H., and Schlüter, Andreas. 2016. “Draft Genome Sequence of Propionisporasp. Strain 2/2-37, a New Xylan-Degrading Bacterium Isolated from a Mesophilic Biogas Reactor”. Genome Announcements 4 (3): e00609-16.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904993 OA
Koeck, Daniela E., Maus, Irena, Wibberg, Daniel, Winkler, Anika, Zverlov, Vladimir V., Liebl, Wolfgang, Pühler, Alfred, Schwarz, Wolfgang H., and Schlüter, Andreas. 2016. “Complete Genome Sequence of Herbinix luporumSD1D, a New Cellulose-Degrading Bacterium Isolated from a Thermophilic Biogas Reactor”. Genome Announcements 4 (4): e00687-16.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904325 OA
Henke, Nadja Alina, Heider, Sabine, Peters-Wendisch, Petra, and Wendisch, Volker F. 2016. “Production of the marine carotenoid astaxanthin by metabolically engineered Corynebacterium glutamicum”. Marine Drugs 14: 124.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904860
Wendisch, Volker F., Fernandes de Brito, Luciana, Gil Lopez, Marina, Hennig, Guido, Pfeifenschneider, Johannes, Sgobba, Elvira, and Veldmann, Kareen H. 2016. “The flexible feedstock concept in Industrial Biotechnology: metabolic engineering of Escherichia coli, Corynebacterium glutamicum, Pseudomonas, Bacillus and yeast strains for access to alternative carbon sources”. Journal of Biotechnology 234: 139-157.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901413 OA
Gorzolka, Karin, Kölling, Jan, Nattkemper, Tim Wilhelm, and Niehaus, Karsten. 2016. “Spatio-Temporal Metabolite Profiling of the Barley Germination Process by MALDI MS Imaging”. PLOS ONE 11 (3): 0150208.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904815 OA
Stolze, Yvonne, Bremges, Andreas, Rumming, Madis, Henke, Christian, Maus, Irena, Pühler, Alfred, Sczyrba, Alexander, and Schlüter, Andreas. 2016. “Identification and genome reconstruction of abundant distinct taxa in microbiomes from one thermophilic and three mesophilic production-scale biogas plants”. Biotechnology for Biofuels 9: 156.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2906597
Jaeger, Daniel, Pilger, Christian, Hachmeister, Henning, Oberländer, Elina, Wördenweber, Robin, Wichmann, Julian, Mussgnug, Jan H., Huser, Thomas, and Kruse, Olaf. 2016. “Label-free in vivo analysis of intracellular lipid droplets in the oleaginous microalga Monoraphidium neglectum by coherent Raman scattering microscopy”. Scientific Reports 6: 35340.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907679 OA
Schwarzhans, Jan Philipp, Wibberg, Daniel, Winkler, Anika, Luttermann, Tobias, Kalinowski, Jörn, and Friehs, Karl. 2016. “Non-canonical integration events in Pichia pastoris encountered during standard transformation analysed with genome sequencing”. Scientific Reports 6: 38952.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903655 OA
Schwarzhans, Jan Philipp, Wibberg, Daniel, Winkler, Anika, Luttermann, Tobias, Kalinowski, Jörn, and Friehs, Karl. 2016. “Integration event induced changes in recombinant protein productivity in Pichia pastoris discovered by whole genome sequencing and derived vector optimization”. Microbial Cell Factories 15: 84.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905495 OA
Irla, Marta, Heggeset, Tonje M., Naerdal, Ingemar, Paul, Lidia, Haugen, Tone, Le, Simone B., Brautaset, Trygve, and Wendisch, Volker F. 2016. “Genome-based genetic tool development for Bacillus methanolicus: theta- and rolling circle-replicating plasmids for inducible gene expression and application to methanol-based cadaverine production”. Frontiers in Microbiology 7: 1481.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903660 OA
Steffens, Tim, Vorhölter, Frank-Jörg, Giampa, Marco, Hublik, Gerd, Pühler, Alfred, and Niehaus, Karsten. 2016. “The influence of a modified lipopolysaccharide O-antigen on the biosynthesis of xanthan in Xanthomonas campestris pv. campestris B100”. BMC Microbiology 16: 93.
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2016 | Bielefelder E-Dissertation | PUB-ID: 2902049 OA
Dörr, Daniel. 2016. Gene family-free genome comparison. Bielefeld: Universität Bielefeld.
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2016 | Bielefelder E-Dissertation | PUB-ID: 2904907 OA
Ortseifen, Vera. 2016. Genombasierte Modellbildung zur Biosynthese von Acarviostatin-Metaboliten in drei Actinoplanes sp. SE50/110-Stämmen. Bielefeld: Universität Bielefeld.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907439
Lenta, Bruno Ndjakou, Ngatchou, Jules, Frese, Marcel, Ladoh-Yemeda, Flora, Voundi, Steve, Nardella, Flore, Michalek, Carmela, et al. 2016. “Purpureone, an antileishmanial ergochrome from the endophytic fungus Purpureocillium lilacinum”. ZEITSCHRIFT FUR NATURFORSCHUNG SECTION B-A JOURNAL OF CHEMICAL SCIENCES 71 (11): 1159-1167.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2906183
Schulte, Fabian, Flaschel, Erwin, and Niehaus, Karsten. 2016. “Proteome-Based Analysis of Colloidal Instability Enables the Detection of Haze-Active Proteins in Beer”. Journal of Agricultural and Food Chemistry 64 (35): 6752-6761.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2906715
Koeck, Daniela E., Wibberg, Daniel, Maus, Irena, Winkler, Anika, Albersmeier, Andreas, Zverlov, Vladimir V., Liebl, Wolfgang, Pühler, Alfred, Schwarz, Wolfgang H., and Schlüter, Andreas. 2016. “Corrigendum to "Complete genome sequence of the cellulolytic thermophile Ruminoclostridium cellulosi wild-type strain DG5 isolated from a thermophilic biogas plant (J. Biotechnol. 188 (2014) 136–137)")"”. Journal of Biotechnology 237: 35.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905630
Gren, Tetiana, Ortseifen, Vera, Wibberg, Daniel, Schneiker-Bekel, Susanne, Bednarz, Hanna, Niehaus, Karsten, Zemke, Till, Persicke, Marcus, Pühler, Alfred, and Kalinowski, Jörn. 2016. “Genetic engineering in Actinoplanes sp SE50/110-development of an intergeneric conjugation system for the introduction of actinophage-based integrative vectors”. Journal of Biotechnology 232: 79-88.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907633 OA
Lux, Markus, Krüger, Jan, Rinke, Christian, Maus, Irena, Schlüter, Andreas, Woyke, Tanja, Sczyrba, Alexander, and Hammer, Barbara. 2016. “acdc – Automated Contamination Detection and Confidence estimation for single-cell genome data”. BMC Bioinformatics 17: 543.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904691
Martini, Maria C., Wibberg, Daniel, Lozano, Mauricio, Torres Tejerizo, Gonzalo, Albicoro, Francisco J., Jaenicke, Sebastian, van Elsas, Jan Dirk, et al. 2016. “Genomics of high molecular weight plasmids isolated from an on-farm biopurification system”. Scientific Reports 6: 28284.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904704
Celis, Juan Sebastian, Wibberg, Daniel, Winkler, Anika, Wilke, Thomas, and Kalinowski, Jörn. 2016. “Complete mitochondrial genome of the scleractinian coral Porites rus”. Mitochondrial DNA 27 (5): 3695-3696.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904047
Eberhardt, Dorit, Jorge, João, Perez, Fernando, Taniguchi, Hironori, and Wendisch, Volker F. 2016. “Roles of export genes cgmA and lysE for the production of L-arginine and L-citrulline by Corynebacterium glutamicum”. Appl Microbiol Biotechnol 100 (19): 8465-8474.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903489
Maus, Irena, Cibis, Katharina Gabriela, Bremges, Andreas, Stolze, Yvonne, Wibberg, Daniel, Tomazetto, Geizecler, Blom, Jochen, et al. 2016. “Genomic characterization of Defluviitoga tunisiensis L3, a key hydrolytic bacterium in a thermophilic biogas plant and its abundance as determined by metagenome fragment recruitment”. Journal of Biotechnology 232: 50-60.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903302
Wibberg, Daniel, Bremges, Andreas, Dammann-Kalinowski, Tanja, Maus, Irena, Igeño, Maria Isabel, Vogelsang, Ralph, König, Christoph, et al. 2016. “Finished genome sequence and methylome of the cyanide-degrading Pseudomonas pseudoalcaligenes strain CECT5344 as resolved by single-molecule real-time sequencing”. Journal of Biotechnology 232: 61-68.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2902126
Liebe, Sebastian, Wibberg, Daniel, Winkler, Anika, Pühler, Alfred, Schlüter, Andreas, and Varrelmann, Mark. 2016. “Taxonomic analysis of the microbial community in stored sugar beets using high-throughput sequencing of different marker genes”. FEMS Microbiology Ecology 92 (2): fiw004.
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2016 | Kurzbeitrag Konferenz / Poster | PUB-ID: 2905827 OA
Weisshaar, Bernd, Himmelbauer, Heinz, Schmidt, Thomas, Holtgräwe, Daniela, Minoche, Andre E., Dohm, Juliane, Stracke, Ralf, et al. 2016. “Sugar Beet BeetMap-3, and Steps to Improve the Genome Assembly and Genome Sequence Annotation (W875)”. Presented at the Plant and Animal Genome XXIV Conference, San Diego, USA .
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905505
Wolf, Timo, Gren, Tetiana, Thieme, Eric, Wibberg, Daniel, Zemke, Till, Pühler, Alfred, and Kalinowski, Jörn. 2016. “Targeted genome editing in the rare actinomycete Actinoplanes sp SE50/110 by using the CRISPR/Cas9 System”. Journal of Biotechnology 231: 122-128.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905632
Walter, Frederik, Grenz, Sebastian, Ortseifen, Vera, Persicke, Marcus, and Kalinowski, Jörn. 2016. “Corynebacterium glutamicum ggtB encodes a functional gamma-glutamyl transpeptidase with gamma-glutamyl dipeptide synthetic and hydrolytic activity”. Journal of Biotechnology 232: 99-109.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905170 OA
Hilker, Rolf, Stadermann, Kai Bernd, Schwengers, Oliver, Anisiforov, Evgeny, Jaenicke, Sebastian, Weisshaar, Bernd, Zimmermann, Tobias, and Goesmann, Alexander. 2016. “ReadXplorer 2 - detailed read mapping analysis and visualization from one single source”. Bioinformatics 32 (24): 3702-3708.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903593
Jorge, João, Leggewie, Christian, and Wendisch, Volker F. 2016. “A new metabolic route for the production of gamma-aminobutyric acid by Corynebacterium glutamicum”. Amino Acids 48 (11): 2519-2531.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903776
Perez, Fernando, Peters-Wendisch, Petra, and Wendisch, Volker F. 2016. “Engineering Corynebacterium glutamicum for fast production of L-lysine and L-pipecolic acid”. Appl. Microbiol. Biotechnol. 100 (18): 8075-8090.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901989
Wendisch, Volker F., Jorge, João, Perez, Fernando, and Sgobba, Elvira. 2016. “Updates on Industrial Production of Amino Acids using Corynebacterium glutamicum”. World J Microbiol Biotechnol 32 (6): 105.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900943
Langenkämper, Daniel, Jakobi, Tobias, Feld, Dustin, Jelonek, Lukas, Goesmann, Alexander, and Nattkemper, Tim Wilhelm. 2016. “Comparison of Acceleration Techniques for Selected Low-Level Bioinformatics Operations”. Frontiers in Genetics 7: 5.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901729
Bremges, Andreas, Singer, Esther, Woyke, Tanja, and Sczyrba, Alexander. 2016. “MeCorS: Metagenome-enabled error correction of single cell sequencing reads”. Bioinformatics 32 (14): 2199-2201.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901243
Wendler, Sergej, Otto, Andreas, Ortseifen, Vera, Bonn, Florian, Neshat, Armin, Schneiker-Bekel, Susanne, Wolf, Timo, et al. 2016. “Comparative proteome analysis of Actinoplanes sp SE50/110 grown with maltose or glucose shows Minor differences for acarbose biosynthesis proteins but major differences for saccharide transporters”. Journal of Proteomics 131: 140-148.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2902089
Lauersen, Kyle J., Willamme, Rémi, Coosemans, Nadine, Joris, Marine, Kruse, Olaf, and Remacle, Claire. 2016. “Peroxisomal microbodies are at the crossroads of acetate assimilation in the green microalga Chlamydomonas reinhardtii”. Algal Research 16: 266-274.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901675
Krahn, Thomas, Wibberg, Daniel, Maus, Irena, Winkler, Anika, Bontron, Séverine, Sczyrba, Alexander, Nordmann, Patrice, Pühler, Alfred, Poirel, Laurent, and Schlüter, Andreas. 2016. “Intraspecies transfer of the chromosomally encoded Acinetobacter baumannii blaNDM-1 carbapenemase gene.”. Antimicrobial Agents and Chemotherapy 60 (5): 3032-3040.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901808
Alkhateeb, Rabeaa, Vorhölter, Frank-Jörg, Rückert, Christian, Mentz, Almut, Wibberg, Daniel, Hublik, Gerd, Niehaus, Karsten, and Pühler, Alfred. 2016. “Genome wide transcription start sites analysis of the Xanthomonas campestris pv. campestris B100 with insights into the gum gene cluster directing the biosynthesis of the exopolysaccharide xanthan.”. J Biotechnol 225: 18-28.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905993
Giampa, Marco, Lissel, Manfred, Patschkowski, Thomas, Fuchser, J., Hans, V. H., Gembruch, O., Bednarz, Hanna, and Niehaus, Karsten. 2016. “Maleic anhydride proton sponge as a novel MALDI matrix for the visualization of small molecules (< 250 m/z) in brain tumors by routine MALDI ToF imaging mass spectrometry”. Chemical Communications 52 (63): 9801-9804.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905260
Maus, Irena, Koeck, Daniela E., Cibis, Katharina G., Hahnke, Sarah, Kim, Yong S., Langer, Thomas, Kreubel, Jana, et al. 2016. “Unraveling the microbiome of a thermophilic biogas plant by metagenome and metatranscriptome analysis complemented by characterization of bacterial and archaeal isolates”. Biotechnology for Biofuels 9 (1): 171.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2906720
Nguyen, Thanh Van, Wibberg, Daniel, Battenberg, Kai, Blom, Jochen, Vanden Heuvel, Brian, Berry, Alison M., Kalinowski, Jörn, and Pawlowski, Katharina. 2016. “An assemblage of Frankia Cluster II strains from California contains the canonical nod genes and also the sulfotransferase gene nodH”. BMC Genomics 17: 796.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905504
Kröber, Magdalena, Verwaaijen, Bart, Wibberg, Daniel, Winkler, Anika, Pühler, Alfred, and Schlüter, Andreas. 2016. “Comparative transcriptome analysis of the biocontrol strain Bacillus amyloliquefaciens FZB42 as response to biofilm formation analyzed by RNA sequencing”. Journal of Biotechnology 231: 212-223.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905629
Tomazetto, Geizecler, Hahnke, Sarah, Koeck, Daniela E., Wibberg, Daniel, Maus, Irena, Pühler, Alfred, Klocke, Michael, and Schlüter, Andreas. 2016. “Complete genome analysis of Clostridium bornimense strain M2/40(T). A new acidogenic Clostridium species isolated from a mesophilic two-phase laboratory-scale biogas reactor”. Journal of Biotechnology 232: 38-49.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905631
Leßmeier, Lennart, Alkhateeb, Rabeaa, Schulte, Fabian, Steffens, Tim, Loka, Tobias Pascal, Pühler, Alfred, Niehaus, Karsten, and Vorhölter, Frank-Jörg. 2016. “Applying DNA affinity chromatography to specifically screen for sucrose-related DNA-binding transcriptional regulators of Xanthomonas campestris”. Journal of Biotechnology 232: 89-98.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904474
Perez, Fernando, Vasco-Cardenas, María F., and Barreiro, Carlos. 2016. “Biotypes analysis of Corynebacterium glutamicum growing in dicarboxylic acids demonstrates the existence of industrially-relevant intra-species variations”. Journal of Proteomics 146: 172-183.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904234
Ortseifen, Vera, Stolze, Yvonne, Maus, Irena, Sczyrba, Alexander, Bremges, Andreas, Albaum, Stefan, Jaenicke, Sebastian, Fracowiak, Jochen, Pühler, Alfred, and Schlüter, Andreas. 2016. “An integrated metagenome and -proteome analysis of the microbial community residing in a biogas production plant”. Journal of Biotechnology 231: 268-279.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Patent | PUB-ID: 2907839
Jorge, João, and Wendisch, Volker F. 28.06.2016. “Biological preparation of 5-aminovalerate”.
PUB
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907079
Wippermann, Anna, Rupp, Oliver, Brinkrolf, Karina, Hoffrogge, Raimund, and Noll, Thomas. 2016. “Integrative analysis of DNA methylation and gene expression in butyrate-treated CHO cells”. Journal of Biotechnology 257: 150-161.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2701466
Nguyen, Anh Quynh, Schneider, Jens, and Wendisch, Volker F. 2015. “Elimination of polyamine N-acetylation and regulatory engineering improved putrescine production by Corynebacterium glutamicum”. Journal of Biotechnology 201: 75-85.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2702877
Leßmeier, Lennart, Zahoor ul Hassan, Ahmed, Lindner, Steffen, and Wendisch, Volker F. 2015. “Metabolic Engineering of Corynebacterium glutamicum for Alternative Carbon Source Utilization”. In Corynebacterium glutamicum: From Systems Biology to Biotechnological Applications, ed. Andreas Burkovski, 57-70. Caister Academic Press.
PUB | DOI
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2729771 OA
Nguyen, Anh Quynh, Komati Reddy, Gajendar, Schneider, Jens, and Wendisch, Volker F. 2015. “Fermentative production of the diamine putrescine: systems metabolic engineering of Corynebacterium glutamicum”. Metabolites 5: 211-231.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2706344 OA
Irla, Marta, Neshat, Armin, Brautaset, Trygve, Rückert, Christian, Kalinowski, Jörn, and Wendisch, Volker F. 2015. “Transcriptome analysis of thermophilic methylotrophic Bacillus methanolicus MGA3 using RNA-sequencing provides detailed insights into its previously uncharted transcriptional landscape”. BMC Genomics 16: 73.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2761035
Arnold, Martin, Wibberg, Daniel, Blom, Jochen, Schatschneider, Sarah, Winkler, Anika, Kutter, Yvonne, Rückert, Christian, et al. 2015. “Draft Genome Sequence of Pseudomonas aeruginosa Strain WS136, a Highly Cytotoxic ExoS-Positive Wound Isolate Recovered from Pyoderma Gangrenosum”. Genome announcements 3 (4).
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2785064 OA
Krahn, Thomas, Wibberg, Daniel, Maus, Irena, Winkler, Anika, Nordmann, Patrice, Pühler, Alfred, Poirel, Laurent, and Schlüter, Andreas. 2015. “Complete Genome Sequence of the Clinical Strain Acinetobacter baumannii R2090 Carrying the Chromosomally Encoded Metallo-β-Lactamase GeneblaNDM-1”. Genome Announcements 3 (5): e01008-15.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758144
Wibberg, Daniel, Rupp, Oliver, Jelonek, Lukas, Kröber, Magdalena, Verwaaijen, Bart, Blom, Jochen, Winkler, Anika, et al. 2015. “Improved genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 as established by deep mate-pair sequencing on the MiSeq (Illumina) system”. Journal of Biotechnology 203: 19-21.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2722138 OA
Kessler, Nikolas, Bonte, Anja, Albaum, Stefan, Mäder, Paul, Messmer, Monika, Goesmann, Alexander, Niehaus, Karsten, Langenkämper, Georg, and Nattkemper, Tim Wilhelm. 2015. “Learning to classify organic and conventional wheat - a machine-learning driven approach using the MeltDB 2.0 metabolomics analysis platform”. Frontiers in Bioinformatics and Computational Biology 3: 35.
PUB | PDF | DOI
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2753011 OA
Lauersen, Kyle J., Huber, Isabel, Wichmann, Julian, Baier, Thomas, Leiter, Andreas, Gaukel, Volker, Kartushin, Viktor, et al. 2015. “Investigating the dynamics of recombinant protein secretion from a microalgal host”. Journal of Biotechnology 215: 62-71.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2712315 OA
Lauersen, Kyle J., Kruse, Olaf, and Mussgnug, Jan H. 2015. “Targeted expression of nuclear transgenes in Chlamydomonas reinhardtii with a versatile, modular vector toolkit”. Applied Microbiology and Biotechnology 99 (8): 3491-3503.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901297 OA
Wibberg, Daniel, Rupp, Oliver, Blom, Jochen, Jelonek, Lukas, Kröber, Magdalena, Verwaaijen, Bart, Goesmann, Alexander, et al. 2015. “Development of a Rhizoctonia solani AG1-IB Specific Gene Model Enables Comparative Genome Analyses between Phytopathogenic R-solani AG1-IA, AG1-IB, AG3 and AG8 Isolates”. Plos One 10 (12): e0144769.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2768627 OA
Eikmeyer, Felix Gregor, Heinl, Stefan, Marx, Hans, Pühler, Alfred, Grabherr, Reingard, and Schlüter, Andreas. 2015. “Identification of Oxygen-Responsive Transcripts in the Silage Inoculant Lactobacillus buchneri CD034 by RNA Sequencing”. PLoS ONE 10 (7): e0134149.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2777468 OA
Freudenau, Inga, Lutter, Petra, Baier, Ruth, Schleef, Martin, Bednarz, Hanna, Lara, Alvaro R., and Niehaus, Karsten. 2015. “ColE1-Plasmid Production in Escherichia coli: Mathematical Simulation and Experimental Validation”. Frontiers in Bioengineering and Biotechnology 3: 127.
PUB | PDF | DOI
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2775617 OA
Stadermann, Kai Bernd, Weisshaar, Bernd, and Holtgräwe, Daniela. 2015. “SMRT sequencing only de novo assembly of the sugar beet (Beta vulgaris) chloroplast genome”. BMC Bioinformatics 16: 295.
PUB | PDF | DOI | WoS | PubMed | Europe PMC | GenBank
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900198 OA
Nolla Ardevol, Vimac, Peces, Miriam, Strous, Marc, and Tegetmeyer, Halina. 2015. “Metagenome from a Spirulina digesting biogas reactor: analysis via binning of contigs and classification of short reads”. BMC Microbiology 15: 277.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764906 OA
Bremges, Andreas, Maus, Irena, Belmann, Peter, Eikmeyer, Felix Gregor, Winkler, Anika, Albersmeier, Andreas, Pühler, Alfred, Schlüter, Andreas, and Sczyrba, Alexander. 2015. “Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant”. GigaScience 4 (1): 33.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2760033 OA
Nolla Ardevol, Vimac, Strous, Marc, and Tegetmeyer, Halina. 2015. “Anaerobic digestion of the microalga Spirulina at extreme alkaline conditions: biogas production, metagenome, and metatranscriptome”. Frontiers in Microbiology 6: 597.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2722382 OA
Stolze, Yvonne, Zakrzewski, Martha, Maus, Irena, Eikmeyer, Felix Gregor, Jaenicke, Sebastian, Rottmann, Nils, Siebner, Clemens, Pühler, Alfred, and Schlüter, Andreas. 2015. “Comparative metagenomics of biogas-producing microbial communities from production-scale biogas plants operating under wet or dry fermentation conditions”. Biotechnology for Biofuels 8: 14.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2015 | Dissertation | Veröffentlicht | PUB-ID: 2902942
Walter, Frederik. 2015. Etablierung einer LC-ESI-MS-Plattform und Analyse der Biosynthese von L-Arginin und Gamma-Glutamyl-Dipeptiden in Corynebacterium glutamicum. Bielefeld.
PUB
 
2015 | Dissertation | Veröffentlicht | PUB-ID: 2901374
Kulis-Horn, Robert. 2015. Untersuchung der L-Histidinbiosynthese in Corynebacterium glutamicum ATCC 13032 zur Erzeugung eines L-Histidinproduzenten. Bielefeld.
PUB
 
2015 | Dissertation | Veröffentlicht | PUB-ID: 2901381
Eikmeyer, Felix Gregor. 2015. Untersuchung der Rolle von Lactobacillus buchneri CD034 bei der Bildung von Grassilage mittels nukleinsäurebasierter Methoden. Bielefeld.
PUB
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2762833
Kohrs, Fabian, Wolter, Sophie, Benndorf, Dirk, Heyer, Robert, Hoffmann, Marcus, Rapp, Erdmann, Bremges, Andreas, Sczyrba, Alexander, Schlüter, Andreas, and Reichl, Udo. 2015. “Fractionation of biogas plant sludge material improves metaproteomic characterization to investigate metabolic activity of microbial communities”. Proteomics 15 (20): 3585-3589.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Patent | PUB-ID: 2906692
Kind, Stefanie, and Jorge, João. 11.09.2015. “Process for preparing terminal amino carboxylic acids and amino aldehydes by means of a recombinant microorganism”.
PUB
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2733521
Stoeveken, J., Singh, R., Kolkenbrock, S., Zakrzewski, Martha, Wibberg, Daniel, Eikmeyer, Felix Gregor, Pühler, Alfred, Schlüter, Andreas, and Moerschbacher, B. M. 2015. “Successful heterologous expression of a novel chitinase identified by sequence analyses of the metagenome from a chitin-enriched soil sample”. Journal of Biotechnology 201: 60-68.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2717648
Hahnke, Sarah, Maus, Irena, Wibberg, Daniel, Geizecler, Tomazetto, Pühler, Alfred, Klocke, Michael, and Schlüter, Andreas. 2015. “Complete genome sequence of the novel Porphyromonadaceae bacterium strain ING2-E5B isolated from a mesophilic lab-scale biogas reactor”. Journal of Biotechnology 193: 34-36.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2709783
Ortseifen, Vera, Winkler, Anika, Albersmeier, Andreas, Wendler, Sergej, Pühler, Alfred, Kalinowski, Jörn, and Rückert, Christian. 2015. “Complete Genome Sequence of the Actinobacterium Streptomyces glaucescens GLA.O (DSM 40922) consisting of a linear chromosome and one linear plasmid”. Journal of Biotechnology 194: 81-83.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2782501
Belmann, Peter, Dröge, Johannes, Bremges, Andreas, McHardy, Alice C, Sczyrba, Alexander, and Barton, Michael D. 2015. “Bioboxes: standardised containers for interchangeable bioinformatics software”. GigaScience 4: 47.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764307
Wendler, Sergej, Otto, Andreas, Ortseifen, Vera, Bonn, Florian, Neshat, Armin, Schneiker-Bekel, Susanne, Walter, Frederik, et al. 2015. “Comprehensive proteome analysis of Actinoplanes sp SE50/110 highlighting the location of proteins encoded by the acarbose and the pyochelin biosynthesis gene cluster”. Journal of Proteomics 125: 1-16.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758122
Wibberg, Daniel, Alkhateeb, Rabeaa, Winkler, Anika, Albersmeier, Andreas, Schatschneider, Sarah, Albaum, Stefan, Niehaus, Karsten, Hublik, Gerd, Pühler, Alfred, and Vorhölter, Frank-Jörg. 2015. “Draft genome of the xanthan producer Xanthomonas campestris NRRL B-1459 (ATCC 13951)”. Journal of Biotechnology 204: 45-46.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758134
Maus, Irena, Cibis, Katharina Gabriela, Wibberg, Daniel, Winkler, Anika, Stolze, Yvonne, König, Helmut, Pühler, Alfred, and Schlüter, Andreas. 2015. “Complete genome sequence of the strain Defluviitoga tunisiensis L3, isolated from a thermophilic, production-scale biogas plant”. Journal of Biotechnology 203: 17-18.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2718773
Wippermann, Anna, Rupp, Oliver, Brinkrolf, Karina, Hoffrogge, Raimund, and Noll, Thomas. 2015. “The DNA methylation landscape of Chinese hamster ovary (CHO) DP-12 cells”. Journal of Biotechnology 199: 38-46.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2733509
Maus, Irena, Wibberg, Daniel, Stantscheff, Robbin, Stolze, Yvonne, Blom, Jochen, Eikmeyer, Felix Gregor, Fracowiak, Jochen, König, Helmut, Pühler, Alfred, and Schlüter, Andreas. 2015. “Insights into the annotated genome sequence of Methanoculleus bourgensis MS2(T), related to dominant methanogens in biogas-producing plants”. Journal of Biotechnology 201: 43-53.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901214
Koeck, Daniela E., Maus, Irena, Wibberg, Daniel, Winkler, Anika, Zverlov, Vladimir V., Liebl, Wolfgang, Pühler, Alfred, Schwarz, Wolfgang H., and Schlüter, Andreas. 2015. “Draft genome sequence of Herbinix hemicellulosilytica T3/55(T), a new thermophilic cellulose degrading bacterium isolated from a thermophilic biogas reactor”. Journal of Biotechnology 214: 59-60.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Dissertation | Veröffentlicht | PUB-ID: 2901404
Nguyen, Anh Quynh. 2015. Metabolic engineering for improving putrescine production in C. glutamicum.
PUB
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2778477
Dziewit, Lukasz, Czarnecki, Jakub, Prochwicz, Emilia, Wibberg, Daniel, Schlüter, Andreas, Pühler, Alfred, and Bartosik, Dariusz. 2015. “Genome-guided insight into the methylotrophy of Paracoccus aminophilus JCM 7686”. Frontiers in Microbiology 6: 852.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764185
Schafhauser, Thomas, Wibberg, Daniel, Rückert, Christian, Winkler, Anika, Flor, Liane, van Pée, Karl-Heinz, Fewer, David P., et al. 2015. “Draft genome sequence of Talaromyces islandicus ("Penicillium islandicum") WF-38-12, a neglected mold with significant biotechnological potential”. Journal of Biotechnology 211: 101-102.
PUB | DOI | WoS | PubMed | Europe PMC
 

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