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136 Publikationen

2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901460
Löwes, B., Chauve, C., Ponty, Y., Giegerich, R.: The BRaliBase Dent – a Tale of Benchmark Design and Interpretation. Briefings in Bioinformatics. 18, 306-311 (2017).
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903044
Gatter, T., Giegerich, R., Saule, C.: Integrating Pareto Optimization into Dynamic Programming. ALGORITHMS. 9, : 12 (2016).
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917100
Nuss, A.M., Heroven, A.K., Waldmann, B., Reinkensmeier, J., Jarek, M., Beckstette, M., Dersch, P.: Transcriptomic Profiling of Yersinia pseudotuberculosis Reveals Reprogramming of the Crp Regulon by Temperature and Uncovers Crp as a Master Regulator of Small RNAs. PLOS GENETICS. 11, : 26 (2015).
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905757
Giegerich, R., Touzet, H.: Modeling Dynamic Programming Problems over Sequences and Trees with Inverse Coupled Rewrite Systems. Algorithms. 7, 62-144 (2014).
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2014 | Bielefelder E-Dissertation | PUB-ID: 2682131 OA
Janssen, S.: Kisses, ambivalent models and more: Contributions to the analysis of RNA secondary structure. Universitätsbibliothek, Bielefeld (2014).
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2699802
Torres-Quesada, O., Reinkensmeier, J., Schlueter, J.-P., Robledo, M., Peregrina, A., Giegerich, R., Toro, N., Becker, A., Jimenez-Zurdo, J.I.: Genome-wide profiling of Hfq-binding RNAs uncovers extensive post-transcriptional rewiring of major stress response and symbiotic regulons in Sinorhizobium meliloti. RNA Biology. 11, 563-579 (2014).
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2681698
Sauthoff, G., Giegerich, R.: Yield grammar analysis and product optimization in a domain-specific language for dynamic programming. Science of Computer Programming. 87, 2-22 (2014).
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2699792
Becker, A., Overloeper, A., Schlueter, J.-P., Reinkensmeier, J., Robledo, M., Giegerich, R., Narberhaus, F., Evguenieva-Hackenberg, E.: Riboregulation in plant-associated alpha-proteobacteria. RNA Biology. 11, 550-562 (2014).
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2584661
Schlueter, J.-P., Reinkensmeier, J., Barnett, M.J., Lang, C., Krol, E., Giegerich, R., Long, S.R., Becker, A.: Global mapping of transcription start sites and promoter motifs in the symbiotic a-proteobacterium Sinorhizobium meliloti 1021. Bmc Genomics. 14, 156 (2013).
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645192
Gillett, A., Bergman, P., Parsa, R., Bremges, A., Giegerich, R., Jagodic, M.: A Silent Exonic SNP in Kdm3a Affects Nucleic Acids Structure but Does Not Regulate Experimental Autoimmune Encephalomyelitis. Plos One. 8, e81912 (2013).
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2013 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2901275
Löwes, B., Giegerich, R.: Avoiding Ambiguity and Assessing Uniqueness in Minisatellite Alignment. In: Beißbarth, T., Kollmar, M., Leha, A., Morgenstern, B., Schultz, A.-K., Waack, S., and Wingender, E. (eds.) German Conference on Bioinformatics 2013. OpenAccess Series in Informatics (OASIcs). 34, p. 110-124. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, Dagstuhl, Germany (2013).
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2607289
Schirmer, S., Giegerich, R.: Forest alignment with affine gaps and anchors, applied in RNA structure comparison. Theoretical Computer Science. 483, 51-67 (2013).
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2012 | Sammelwerksbeitrag | PUB-ID: 2439665
Janssen, S., Giegerich, R.: Abstract Shape Analysis of RNA. In: Gorodkin, J. and Weinberg, Z. (eds.) RNA Bioinformatics t.b.a. p. 1-35. (2012).
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2410526 OA
Janssen, S., Schudoma, C., Steger, G., Giegerich, R.: Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction. BMC Bioinformatics. 12, 429 (2011).
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2427226
Reinkensmeier, J., Schlüter, J.-P., Giegerich, R., Becker, A.: Conservation and Occurrence of Trans-Encoded sRNAs in the Rhizobiales. GENES. 925-956 (2011).
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2011 | Bielefelder E-Dissertation | PUB-ID: 2302459 OA
Abdul-Hak, S.: Analytische und empirische Untersuchungen über abstrakte Shapes von RNA-Sekundärstrukturen. Bielefeld University, Bielefeld (Germany) (2011).
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383357
Giegerich, R., Sauthoff, G.: Yield grammar analysis in the Bellman's GAP compiler. Proceedings of the Eleventh Workshop on Language Descriptions, Tools and Applications (ACM). (2011).
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383363
Schirmer, S., Giegerich, R.: Forest Alignment with Affine Gaps and Anchors. Combinatorial Pattern Matching. 104-117 (2011).
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2310489
Sauthoff, G., Janssen, S., Giegerich, R.: Bellman's GAP: a declarative language for dynamic programming. Proceedings of the 13th international ACM SIGPLAN symposium on Principles and practices of declarative programming. p. 29-40. ACM, New York, NY, USA (2011).
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2011 | Bielefelder E-Dissertation | PUB-ID: 2474238 OA
Schirmer, S.: Comparing forests. Bielefeld University, Bielefeld (2011).
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