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136 Publikationen

2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901460
Löwes, B., et al., 2017. The BRaliBase Dent – a Tale of Benchmark Design and Interpretation. Briefings in Bioinformatics, 18(2), p 306-311.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903044
Gatter, T., Giegerich, R., & Saule, C., 2016. Integrating Pareto Optimization into Dynamic Programming. ALGORITHMS, 9(1): 12.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917100
Nuss, A.M., et al., 2015. Transcriptomic Profiling of Yersinia pseudotuberculosis Reveals Reprogramming of the Crp Regulon by Temperature and Uncovers Crp as a Master Regulator of Small RNAs. PLOS GENETICS, 11(3): 26.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905757
Giegerich, R., & Touzet, H., 2014. Modeling Dynamic Programming Problems over Sequences and Trees with Inverse Coupled Rewrite Systems. Algorithms, 7(1), p 62-144.
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2014 | Bielefelder E-Dissertation | PUB-ID: 2682131 OA
Janssen, S., 2014. Kisses, ambivalent models and more: Contributions to the analysis of RNA secondary structure., Bielefeld: Universitätsbibliothek.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2699802
Torres-Quesada, O., et al., 2014. Genome-wide profiling of Hfq-binding RNAs uncovers extensive post-transcriptional rewiring of major stress response and symbiotic regulons in Sinorhizobium meliloti. RNA Biology, 11(5), p 563-579.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2681698
Sauthoff, G., & Giegerich, R., 2014. Yield grammar analysis and product optimization in a domain-specific language for dynamic programming. Science of Computer Programming, 87, p 2-22.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2699792
Becker, A., et al., 2014. Riboregulation in plant-associated alpha-proteobacteria. RNA Biology, 11(5), p 550-562.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2584661
Schlueter, J.-P., et al., 2013. Global mapping of transcription start sites and promoter motifs in the symbiotic a-proteobacterium Sinorhizobium meliloti 1021. Bmc Genomics, 14(1), p 156.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645192
Gillett, A., et al., 2013. A Silent Exonic SNP in Kdm3a Affects Nucleic Acids Structure but Does Not Regulate Experimental Autoimmune Encephalomyelitis. Plos One, 8(12), p e81912.
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2013 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2901275
Löwes, B., & Giegerich, R., 2013. Avoiding Ambiguity and Assessing Uniqueness in Minisatellite Alignment. In T. Beißbarth, et al., eds. German Conference on Bioinformatics 2013. OpenAccess Series in Informatics (OASIcs). no.34 Dagstuhl, Germany: Schloss Dagstuhl - Leibniz-Zentrum für Informatik, pp. 110-124.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2607289
Schirmer, S., & Giegerich, R., 2013. Forest alignment with affine gaps and anchors, applied in RNA structure comparison. Theoretical Computer Science, 483, p 51-67.
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2012 | Sammelwerksbeitrag | PUB-ID: 2439665
Janssen, S., & Giegerich, R., 2012. Abstract Shape Analysis of RNA. In J. Gorodkin & Z. Weinberg, eds. RNA Bioinformatics t.b.a. pp. 1-35.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2410526 OA
Janssen, S., et al., 2011. Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction. BMC Bioinformatics, 12(1), p 429.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2427226
Reinkensmeier, J., et al., 2011. Conservation and Occurrence of Trans-Encoded sRNAs in the Rhizobiales. GENES, , p 925-956.
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2011 | Bielefelder E-Dissertation | PUB-ID: 2302459 OA
Abdul-Hak, S., 01T00:00:00Z.01.1970 Analytische und empirische Untersuchungen über abstrakte Shapes von RNA-Sekundärstrukturen, Bielefeld (Germany): Bielefeld University.
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383357
Giegerich, R., & Sauthoff, G., 2011. Yield grammar analysis in the Bellman's GAP compiler. In Proceedings of the Eleventh Workshop on Language Descriptions, Tools and Applications (ACM).
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383363
Schirmer, S., & Giegerich, R., 2011. Forest Alignment with Affine Gaps and Anchors. Combinatorial Pattern Matching, , p 104-117.
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2310489
Sauthoff, G., Janssen, S., & Giegerich, R., 2011. Bellman's GAP: a declarative language for dynamic programming. In Proceedings of the 13th international ACM SIGPLAN symposium on Principles and practices of declarative programming. New York, NY, USA: ACM, pp. 29-40.
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2011 | Bielefelder E-Dissertation | PUB-ID: 2474238 OA
Schirmer, S., 2011. Comparing forests, Bielefeld: Bielefeld University.
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