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136 Publikationen

2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901460
Löwes, B., Chauve, C., Ponty, Y., and Giegerich, R. (2017). The BRaliBase Dent – a Tale of Benchmark Design and Interpretation. Briefings in Bioinformatics 18, 306-311.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903044
Gatter, T., Giegerich, R., and Saule, C. (2016). Integrating Pareto Optimization into Dynamic Programming. ALGORITHMS 9:12.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917100
Nuss, A. M., Heroven, A. K., Waldmann, B., Reinkensmeier, J., Jarek, M., Beckstette, M., and Dersch, P. (2015). Transcriptomic Profiling of Yersinia pseudotuberculosis Reveals Reprogramming of the Crp Regulon by Temperature and Uncovers Crp as a Master Regulator of Small RNAs. PLOS GENETICS 11:26.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905757
Giegerich, R., and Touzet, H. (2014). Modeling Dynamic Programming Problems over Sequences and Trees with Inverse Coupled Rewrite Systems. Algorithms 7, 62-144.
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2014 | Bielefelder E-Dissertation | PUB-ID: 2682131
Janssen, S. (2014). Kisses, ambivalent models and more: Contributions to the analysis of RNA secondary structure. Bielefeld: Universitätsbibliothek.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2699802
Torres-Quesada, O., Reinkensmeier, J., Schlueter, J. - P., Robledo, M., Peregrina, A., Giegerich, R., Toro, N., Becker, A., and Jimenez-Zurdo, J. I. (2014). Genome-wide profiling of Hfq-binding RNAs uncovers extensive post-transcriptional rewiring of major stress response and symbiotic regulons in Sinorhizobium meliloti. RNA Biology 11, 563-579.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2681698
Sauthoff, G., and Giegerich, R. (2014). Yield grammar analysis and product optimization in a domain-specific language for dynamic programming. Science of Computer Programming 87, 2-22.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2699792
Becker, A., Overloeper, A., Schlueter, J. - P., Reinkensmeier, J., Robledo, M., Giegerich, R., Narberhaus, F., and Evguenieva-Hackenberg, E. (2014). Riboregulation in plant-associated alpha-proteobacteria. RNA Biology 11, 550-562.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2584661
Schlueter, J. - P., Reinkensmeier, J., Barnett, M. J., Lang, C., Krol, E., Giegerich, R., Long, S. R., and Becker, A. (2013). Global mapping of transcription start sites and promoter motifs in the symbiotic a-proteobacterium Sinorhizobium meliloti 1021. Bmc Genomics 14, 156.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645192
Gillett, A., Bergman, P., Parsa, R., Bremges, A., Giegerich, R., and Jagodic, M. (2013). A Silent Exonic SNP in Kdm3a Affects Nucleic Acids Structure but Does Not Regulate Experimental Autoimmune Encephalomyelitis. Plos One 8, e81912.
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2013 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2901275
Löwes, B., and Giegerich, R. (2013). “Avoiding Ambiguity and Assessing Uniqueness in Minisatellite Alignment” in German Conference on Bioinformatics 2013, Beißbarth, T., Kollmar, M., Leha, A., Morgenstern, B., Schultz, A. - K., Waack, S., and Wingender, E. eds. OpenAccess Series in Informatics (OASIcs), vol. 34, (Dagstuhl, Germany: Schloss Dagstuhl - Leibniz-Zentrum für Informatik), 110-124.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2607289
Schirmer, S., and Giegerich, R. (2013). Forest alignment with affine gaps and anchors, applied in RNA structure comparison. Theoretical Computer Science 483, 51-67.
PUB | DOI | WoS
 
2012 | Sammelwerksbeitrag | PUB-ID: 2439665
Janssen, S., and Giegerich, R. (2012). “Abstract Shape Analysis of RNA” in RNA Bioinformatics t.b.a., Gorodkin, J., and Weinberg, Z. eds. 1-35.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2410526
Janssen, S., Schudoma, C., Steger, G., and Giegerich, R. (2011). Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction. BMC Bioinformatics 12, 429.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2427226
Reinkensmeier, J., Schlüter, J. - P., Giegerich, R., and Becker, A. (2011). Conservation and Occurrence of Trans-Encoded sRNAs in the Rhizobiales. GENES, 925-956.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Bielefelder E-Dissertation | PUB-ID: 2302459
Abdul-Hak, S. 01T00:00:00Z.01.1970 Analytische und empirische Untersuchungen über abstrakte Shapes von RNA-Sekundärstrukturen. Bielefeld (Germany): Bielefeld University.
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383357
Giegerich, R., and Sauthoff, G. (2011). “Yield grammar analysis in the Bellman's GAP compiler” in Proceedings of the Eleventh Workshop on Language Descriptions, Tools and Applications (ACM).
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383363
Schirmer, S., and Giegerich, R. (2011). Forest Alignment with Affine Gaps and Anchors. Combinatorial Pattern Matching, 104-117.
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2310489
Sauthoff, G., Janssen, S., and Giegerich, R. (2011). “Bellman's GAP: a declarative language for dynamic programming” in Proceedings of the 13th international ACM SIGPLAN symposium on Principles and practices of declarative programming (New York, NY, USA: ACM), 29-40.
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2011 | Bielefelder E-Dissertation | PUB-ID: 2474238
Schirmer, S. (2011). Comparing forests. Bielefeld: Bielefeld University.
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