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136 Publikationen

2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901460
Löwes, B., Chauve, C., Ponty, Y., & Giegerich, R. (2017). The BRaliBase Dent – a Tale of Benchmark Design and Interpretation. Briefings in Bioinformatics, 18(2), 306-311. doi:10.1093/bib/bbw022
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903044
Gatter, T., Giegerich, R., & Saule, C. (2016). Integrating Pareto Optimization into Dynamic Programming. ALGORITHMS, 9(1), 12. doi:10.3390/a9010012
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917100
Nuss, A. M., Heroven, A. K., Waldmann, B., Reinkensmeier, J., Jarek, M., Beckstette, M., & Dersch, P. (2015). Transcriptomic Profiling of Yersinia pseudotuberculosis Reveals Reprogramming of the Crp Regulon by Temperature and Uncovers Crp as a Master Regulator of Small RNAs. PLOS GENETICS, 11(3), 26. doi:10.1371/journal.pgen.1005087
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905757
Giegerich, R., & Touzet, H. (2014). Modeling Dynamic Programming Problems over Sequences and Trees with Inverse Coupled Rewrite Systems. Algorithms, 7(1), 62-144. doi:10.3390/a7010062
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2014 | Bielefelder E-Dissertation | PUB-ID: 2682131 OA
Janssen, S. (2014). Kisses, ambivalent models and more: Contributions to the analysis of RNA secondary structure.. Bielefeld: Universitätsbibliothek.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2699802
Torres-Quesada, O., Reinkensmeier, J., Schlueter, J. - P., Robledo, M., Peregrina, A., Giegerich, R., Toro, N., et al. (2014). Genome-wide profiling of Hfq-binding RNAs uncovers extensive post-transcriptional rewiring of major stress response and symbiotic regulons in Sinorhizobium meliloti. RNA Biology, 11(5), 563-579. doi:10.4161/rna.28239
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2681698
Sauthoff, G., & Giegerich, R. (2014). Yield grammar analysis and product optimization in a domain-specific language for dynamic programming. Science of Computer Programming, 87, 2-22. doi:10.1016/j.scico.2013.09.011
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2699792
Becker, A., Overloeper, A., Schlueter, J. - P., Reinkensmeier, J., Robledo, M., Giegerich, R., Narberhaus, F., et al. (2014). Riboregulation in plant-associated alpha-proteobacteria. RNA Biology, 11(5), 550-562. doi:10.4161/rna.29625
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2584661
Schlueter, J. - P., Reinkensmeier, J., Barnett, M. J., Lang, C., Krol, E., Giegerich, R., Long, S. R., et al. (2013). Global mapping of transcription start sites and promoter motifs in the symbiotic a-proteobacterium Sinorhizobium meliloti 1021. Bmc Genomics, 14(1), 156. doi:10.1186/1471-2164-14-156
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645192
Gillett, A., Bergman, P., Parsa, R., Bremges, A., Giegerich, R., & Jagodic, M. (2013). A Silent Exonic SNP in Kdm3a Affects Nucleic Acids Structure but Does Not Regulate Experimental Autoimmune Encephalomyelitis. Plos One, 8(12), e81912. doi:10.1371/journal.pone.0081912
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2013 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2901275
Löwes, B., & Giegerich, R. (2013). Avoiding Ambiguity and Assessing Uniqueness in Minisatellite Alignment. In T. Beißbarth, M. Kollmar, A. Leha, B. Morgenstern, A. - K. Schultz, S. Waack, & E. Wingender (Eds.), OpenAccess Series in Informatics (OASIcs): Vol. 34. German Conference on Bioinformatics 2013 (pp. 110-124). Dagstuhl, Germany: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. doi:10.4230/OASIcs.GCB.2013.110
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2607289
Schirmer, S., & Giegerich, R. (2013). Forest alignment with affine gaps and anchors, applied in RNA structure comparison. Theoretical Computer Science, 483, 51-67. doi:10.1016/j.tcs.2012.07.040
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2012 | Sammelwerksbeitrag | PUB-ID: 2439665
Janssen, S., & Giegerich, R. (2012). Abstract Shape Analysis of RNA. In J. Gorodkin & Z. Weinberg (Eds.), RNA Bioinformatics t.b.a. (pp. 1-35).
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2410526 OA
Janssen, S., Schudoma, C., Steger, G., & Giegerich, R. (2011). Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction. BMC Bioinformatics, 12(1), 429. doi:10.1186/1471-2105-12-429
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2427226
Reinkensmeier, J., Schlüter, J. - P., Giegerich, R., & Becker, A. (2011). Conservation and Occurrence of Trans-Encoded sRNAs in the Rhizobiales. GENES, 925-956. doi:10.3390/genes2040925
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2011 | Bielefelder E-Dissertation | PUB-ID: 2302459 OA
Abdul-Hak, S. (01T00:00:00Z.01.1970). Analytische und empirische Untersuchungen über abstrakte Shapes von RNA-Sekundärstrukturen. Bielefeld (Germany): Bielefeld University.
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383357
Giegerich, R., & Sauthoff, G. (2011). Yield grammar analysis in the Bellman's GAP compiler. Proceedings of the Eleventh Workshop on Language Descriptions, Tools and Applications (ACM)
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383363
Schirmer, S., & Giegerich, R. (2011). Forest Alignment with Affine Gaps and Anchors. Combinatorial Pattern Matching, 104-117. doi:10.1007/978-3-642-21458-5_11
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2310489
Sauthoff, G., Janssen, S., & Giegerich, R. (2011). Bellman's GAP: a declarative language for dynamic programming. Proceedings of the 13th international ACM SIGPLAN symposium on Principles and practices of declarative programming, 29-40. doi:10.1145/2003476.2003484
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2011 | Bielefelder E-Dissertation | PUB-ID: 2474238 OA
Schirmer, S. (2011). Comparing forests. Bielefeld: Bielefeld University.
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