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136 Publikationen

2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003355
Giegerich, Robert, and Hoener Zu Siederdissen, Christian. “Semantics and Ambiguity of Stochastic RNA Family Models”. IEEE/ACM Transactions on Computational Biology and Bioinformatics 8.2 (2011): 499-516.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093578
Linke, Burkhard, Giegerich, Robert, and Goesmann, Alexander. “Conveyor: a workflow engine for bioinformatic analyses”. Bioinformatics 27.7 (2011): 903-911.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1893988 OA
Grond, Florian, Janssen, Stefan, Schirmer, Stefanie, and Hermann, Thomas. “Browsing RNA Structures by Interactive Sonification”. Proceedings of the 3rd Interactive Sonification Workshop. Ed. Roberto Bresin, Thomas Hermann, and Andy Hunt. KTH, Stockholm, Sweden: KTH School of Computer Science and Communication (CSC), 2010. 11-16.
PUB | Datei | Download (ext.)
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2906810
Bremges, Andreas, Schirmer, Stefanie, and Giegerich, Robert. “Fine-tuning structural RNA alignments in the twilight zone”. BMC Bioinformatics 11.1 (2010): 222.
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2010 | Bielefelder E-Dissertation | PUB-ID: 2304195 OA
Sauthoff, Georg. Bellman's GAP : a 2nd generation language and system for algebraic dynamic programming. Bielefeld (Germany): Bielefeld University, 2010.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1796697
Brabrand, Claus, Giegerich, Robert, and Moller, Anders. “Analyzing ambiguity of context-free grammars”. SCIENCE OF COMPUTER PROGRAMMING 75.3 (2010): 176-191.
PUB | DOI | WoS
 
2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1894008 OA
Theis, Corinna, Janssen, Stefan, and Giegerich, Robert. “Prediction of RNA Secondary Structure Including Kissing Hairpin Motifs”. Algorithms in Bioinformatics. 10th international workshop (WABI 2010), proceedings. Ed. Vincent Moulton and Mona Singh. Berlin: Springer, 2010.Vol. 6293. Lecture Notes in Bioinformatics. 52-64.
PUB | Datei | DOI
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1893946 OA
Janssen, Stefan, and Giegerich, Robert. “Faster computation of exact RNA shape probabilities”. Bioinformatics 26.5 (2010): 632-639.
PUB | Datei | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785497 OA
Schlüter, Jan-Philip, Reinkensmeier, Jan, Daschkey, Svenja, Evguenieva-Hackenberg, Elena, Janssen, Stefan, Jaenicke, Sebastian, Becker, Joerg D., Giegerich, Robert, and Becker, Anke. “A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti”. BMC Genomics 11.1 (2010): 245.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785512 OA
Bremges, Andreas, Schirmer, Stefanie, and Giegerich, Robert. “Fine-tuning structural RNA alignments in the twilight zone”. BMC Bioinformatics 11.1 (2010): 222.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785581 OA
Abouelhoda, Mohamed, El-Kalioby, Mohamed, and Giegerich, Robert. “WAMI: a web server for the analysis of minisatellite maps”. BMC Evolutionary Biology 10.1 (2010): 167.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383365
Abouelhoda, Mohamed, Giegerich, Robert, Behzadi, B., and Steyaert, J.M. “Alignment of minisatellite maps based on run-length encoding scheme”. Journal of Bioinformatics and Computational Biology 7.02 (2009): 287-308.
PUB | DOI | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383411
Reeder, Jens, and Giegerich, Robert. “RNA secondary structure analysis using the RNAshapes package”. Current Protocols in Bioinformatics (2009).
PUB | DOI | PubMed | Europe PMC
 
2009 | Konferenzbeitrag | Entwurf | PUB-ID: 2383425
Steffen, Peter, Giegerich, Robert, and Giraud, Mathieu. “GPU Parallization of Algebraic Dynamic Programming”. Proceedings PPAM. Unpublished.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589458
Beckstette, Michael, Homann, Robert, Giegerich, Robert, and Kurtz, Stefan. “Significant speedup of database searches with HMMs by search space reduction with PSSM family models”. Bioinformatics 25.24 (2009): 3251-3258.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634374
Homann, Robert, Fleer, David, Giegerich, Robert, and Rehmsmeier, Marc. “mkESA: enhanced suffix array construction tool”. Bioinformatics 25.8 (2009): 1084-1085.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383382
Abouelhoda, Mohamed I., Giegerich, Robert, Behzadi, B., and Steyaert, J.M. “Alignment of Minisatellite Maps: A Minimum Spanning Tree based Approach”. Proceedings of the 6th Asia-Pacific Bioinformatics Conference. 2008. Series on Advances in Bioinformatics and Computational Biology, 6. 261-272.
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2008 | Bielefelder E-Dissertation | PUB-ID: 2305281 OA
Fiedler, Thomas. The jPREdictor and its application to motif discovery, motif clustering and the prediction of Polycomb/Trithorax response elements. Bielefeld (Germany): Bielefeld University, 2008.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1784020 OA
Lamprecht, Anna-Lena, Margaria, Tiziana, Steffen, Bernhard, Sczyrba, Alexander, Hartmeier, Sven, and Giegerich, Robert. “GeneFisher-P: variations of GeneFisher as processes in Bio-jETI”. BMC Bioinformatics 9.Suppl 4 (2008): S13.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1784025 OA
Herold, Julia, Kurtz, Stefan, and Giegerich, Robert. “Efficient computation of absent words in genomic sequences”. BMC Bioinformatics 9.1 (2008): 167.
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