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136 Publikationen

2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003355
Giegerich, R., Hoener Zu Siederdissen, C.: Semantics and Ambiguity of Stochastic RNA Family Models. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 8, 499-516 (2011).
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093578
Linke, B., Giegerich, R., Goesmann, A.: Conveyor: a workflow engine for bioinformatic analyses. Bioinformatics. 27, 903-911 (2011).
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2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1893988 OA
Grond, F., Janssen, S., Schirmer, S., Hermann, T.: Browsing RNA Structures by Interactive Sonification. In: Bresin, R., Hermann, T., and Hunt, A. (eds.) Proceedings of the 3rd Interactive Sonification Workshop. p. 11-16. KTH School of Computer Science and Communication (CSC), KTH, Stockholm, Sweden (2010).
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2906810
Bremges, A., Schirmer, S., Giegerich, R.: Fine-tuning structural RNA alignments in the twilight zone. BMC Bioinformatics. 11, : 222 (2010).
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2010 | Bielefelder E-Dissertation | PUB-ID: 2304195 OA
Sauthoff, G.: Bellman's GAP : a 2nd generation language and system for algebraic dynamic programming. Bielefeld University, Bielefeld (Germany) (2010).
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1796697
Brabrand, C., Giegerich, R., Moller, A.: Analyzing ambiguity of context-free grammars. SCIENCE OF COMPUTER PROGRAMMING. 75, 176-191 (2010).
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2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1894008 OA
Theis, C., Janssen, S., Giegerich, R.: Prediction of RNA Secondary Structure Including Kissing Hairpin Motifs. In: Moulton, V. and Singh, M. (eds.) Algorithms in Bioinformatics. 10th international workshop (WABI 2010), proceedings. Lecture Notes in Bioinformatics. 6293, p. 52-64. Springer, Berlin (2010).
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1893946 OA
Janssen, S., Giegerich, R.: Faster computation of exact RNA shape probabilities. Bioinformatics. 26, 632-639 (2010).
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785497 OA
Schlüter, J.-P., Reinkensmeier, J., Daschkey, S., Evguenieva-Hackenberg, E., Janssen, S., Jaenicke, S., Becker, J.D., Giegerich, R., Becker, A.: A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti. BMC Genomics. 11, : 245 (2010).
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785512 OA
Bremges, A., Schirmer, S., Giegerich, R.: Fine-tuning structural RNA alignments in the twilight zone. BMC Bioinformatics. 11, 222 (2010).
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785581 OA
Abouelhoda, M., El-Kalioby, M., Giegerich, R.: WAMI: a web server for the analysis of minisatellite maps. BMC Evolutionary Biology. 10, 167 (2010).
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383365
Abouelhoda, M., Giegerich, R., Behzadi, B., Steyaert, J.M.: Alignment of minisatellite maps based on run-length encoding scheme. Journal of Bioinformatics and Computational Biology. 7, 287-308 (2009).
PUB | DOI | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383411
Reeder, J., Giegerich, R.: RNA secondary structure analysis using the RNAshapes package. Current Protocols in Bioinformatics. (2009).
PUB | DOI | PubMed | Europe PMC
 
2009 | Konferenzbeitrag | Entwurf | PUB-ID: 2383425
Steffen, P., Giegerich, R., Giraud, M.: GPU Parallization of Algebraic Dynamic Programming. Proceedings PPAM. (Unpublished).
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589458
Beckstette, M., Homann, R., Giegerich, R., Kurtz, S.: Significant speedup of database searches with HMMs by search space reduction with PSSM family models. Bioinformatics. 25, 3251-3258 (2009).
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634374
Homann, R., Fleer, D., Giegerich, R., Rehmsmeier, M.: mkESA: enhanced suffix array construction tool. Bioinformatics. 25, 1084-1085 (2009).
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383382
Abouelhoda, M.I., Giegerich, R., Behzadi, B., Steyaert, J.M.: Alignment of Minisatellite Maps: A Minimum Spanning Tree based Approach. Proceedings of the 6th Asia-Pacific Bioinformatics Conference. Series on Advances in Bioinformatics and Computational Biology, 6. p. 261-272. (2008).
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2008 | Bielefelder E-Dissertation | PUB-ID: 2305281 OA
Fiedler, T.: The jPREdictor and its application to motif discovery, motif clustering and the prediction of Polycomb/Trithorax response elements. Bielefeld University, Bielefeld (Germany) (2008).
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1784020 OA
Lamprecht, A.-L., Margaria, T., Steffen, B., Sczyrba, A., Hartmeier, S., Giegerich, R.: GeneFisher-P: variations of GeneFisher as processes in Bio-jETI. BMC Bioinformatics. 9, S13 (2008).
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1784025 OA
Herold, J., Kurtz, S., Giegerich, R.: Efficient computation of absent words in genomic sequences. BMC Bioinformatics. 9, 167 (2008).
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