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136 Publikationen

2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003355
R. Giegerich and C. Hoener Zu Siederdissen, “Semantics and Ambiguity of Stochastic RNA Family Models”, IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. 8, 2011, pp. 499-516.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093578
B. Linke, R. Giegerich, and A. Goesmann, “Conveyor: a workflow engine for bioinformatic analyses”, Bioinformatics, vol. 27, 2011, pp. 903-911.
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2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1893988 OA
F. Grond, et al., “Browsing RNA Structures by Interactive Sonification”, Proceedings of the 3rd Interactive Sonification Workshop, R. Bresin, T. Hermann, and A. Hunt, eds., KTH, Stockholm, Sweden: KTH School of Computer Science and Communication (CSC), 2010, pp.11-16.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2906810
A. Bremges, S. Schirmer, and R. Giegerich, “Fine-tuning structural RNA alignments in the twilight zone”, BMC Bioinformatics, vol. 11, 2010, : 222.
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2010 | Bielefelder E-Dissertation | PUB-ID: 2304195 OA
G. Sauthoff, Bellman's GAP : a 2nd generation language and system for algebraic dynamic programming, Bielefeld (Germany): Bielefeld University, 2010.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1796697
C. Brabrand, R. Giegerich, and A. Moller, “Analyzing ambiguity of context-free grammars”, SCIENCE OF COMPUTER PROGRAMMING, vol. 75, 2010, pp. 176-191.
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2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1894008 OA
C. Theis, S. Janssen, and R. Giegerich, “Prediction of RNA Secondary Structure Including Kissing Hairpin Motifs”, Algorithms in Bioinformatics. 10th international workshop (WABI 2010), proceedings, V. Moulton and M. Singh, eds., Lecture Notes in Bioinformatics, vol. 6293, Berlin: Springer, 2010, pp.52-64.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1893946 OA
S. Janssen and R. Giegerich, “Faster computation of exact RNA shape probabilities”, Bioinformatics, vol. 26, 2010, pp. 632-639.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785497 OA
J.-P. Schlüter, et al., “A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti”, BMC Genomics, vol. 11, 2010, : 245.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785512 OA
A. Bremges, S. Schirmer, and R. Giegerich, “Fine-tuning structural RNA alignments in the twilight zone”, BMC Bioinformatics, vol. 11, 2010, pp. 222.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785581 OA
M. Abouelhoda, M. El-Kalioby, and R. Giegerich, “WAMI: a web server for the analysis of minisatellite maps”, BMC Evolutionary Biology, vol. 10, 2010, pp. 167.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383365
M. Abouelhoda, et al., “Alignment of minisatellite maps based on run-length encoding scheme”, Journal of Bioinformatics and Computational Biology, vol. 7, 2009, pp. 287-308.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383411
J. Reeder and R. Giegerich, “RNA secondary structure analysis using the RNAshapes package”, Current Protocols in Bioinformatics, 2009.
PUB | DOI | PubMed | Europe PMC
 
2009 | Konferenzbeitrag | Entwurf | PUB-ID: 2383425
P. Steffen, R. Giegerich, and M. Giraud, “GPU Parallization of Algebraic Dynamic Programming”, Proceedings PPAM, Unpublished.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589458
M. Beckstette, et al., “Significant speedup of database searches with HMMs by search space reduction with PSSM family models”, Bioinformatics, vol. 25, 2009, pp. 3251-3258.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634374
R. Homann, et al., “mkESA: enhanced suffix array construction tool”, Bioinformatics, vol. 25, 2009, pp. 1084-1085.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383382
M.I. Abouelhoda, et al., “Alignment of Minisatellite Maps: A Minimum Spanning Tree based Approach”, Proceedings of the 6th Asia-Pacific Bioinformatics Conference, Series on Advances in Bioinformatics and Computational Biology, 6, 2008, pp.261-272.
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2008 | Bielefelder E-Dissertation | PUB-ID: 2305281 OA
T. Fiedler, The jPREdictor and its application to motif discovery, motif clustering and the prediction of Polycomb/Trithorax response elements, Bielefeld (Germany): Bielefeld University, 2008.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1784020 OA
A.-L. Lamprecht, et al., “GeneFisher-P: variations of GeneFisher as processes in Bio-jETI”, BMC Bioinformatics, vol. 9, 2008, pp. S13.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1784025 OA
J. Herold, S. Kurtz, and R. Giegerich, “Efficient computation of absent words in genomic sequences”, BMC Bioinformatics, vol. 9, 2008, pp. 167.
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