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136 Publikationen

2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003355
Giegerich R, Hoener Zu Siederdissen C (2011)
Semantics and Ambiguity of Stochastic RNA Family Models.
IEEE/ACM Transactions on Computational Biology and Bioinformatics 8(2): 499-516.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093578
Linke B, Giegerich R, Goesmann A (2011)
Conveyor: a workflow engine for bioinformatic analyses.
Bioinformatics 27(7): 903-911.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1893988 OA
Grond F, Janssen S, Schirmer S, Hermann T (2010)
Browsing RNA Structures by Interactive Sonification.
In: Proceedings of the 3rd Interactive Sonification Workshop. Bresin R, Hermann T, Hunt A (Eds); KTH, Stockholm, Sweden: KTH School of Computer Science and Communication (CSC): 11-16.
PUB | Datei | Download (ext.)
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2906810
Bremges A, Schirmer S, Giegerich R (2010)
Fine-tuning structural RNA alignments in the twilight zone.
BMC Bioinformatics 11(1): 222.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Bielefelder E-Dissertation | PUB-ID: 2304195 OA
Sauthoff G (01T00:00:00Z.01.1970)
Bellman's GAP : a 2nd generation language and system for algebraic dynamic programming.
Bielefeld (Germany): Bielefeld University.
PUB | PDF
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1796697
Brabrand C, Giegerich R, Moller A (2010)
Analyzing ambiguity of context-free grammars.
SCIENCE OF COMPUTER PROGRAMMING 75(3): 176-191.
PUB | DOI | WoS
 
2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1894008 OA
Theis C, Janssen S, Giegerich R (2010)
Prediction of RNA Secondary Structure Including Kissing Hairpin Motifs.
In: Algorithms in Bioinformatics. 10th international workshop (WABI 2010), proceedings. Moulton V, Singh M (Eds); Lecture Notes in Bioinformatics, 6293. Berlin: Springer: 52-64.
PUB | Datei | DOI
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1893946 OA
Janssen S, Giegerich R (2010)
Faster computation of exact RNA shape probabilities.
Bioinformatics 26(5): 632-639.
PUB | Datei | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785497 OA
Schlüter J-P, Reinkensmeier J, Daschkey S, Evguenieva-Hackenberg E, Janssen S, Jaenicke S, Becker JD, Giegerich R, Becker A (2010)
A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti.
BMC Genomics 11(1): 245.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785512 OA
Bremges A, Schirmer S, Giegerich R (2010)
Fine-tuning structural RNA alignments in the twilight zone.
BMC Bioinformatics 11(1): 222.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785581 OA
Abouelhoda M, El-Kalioby M, Giegerich R (2010)
WAMI: a web server for the analysis of minisatellite maps.
BMC Evolutionary Biology 10(1): 167.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383365
Abouelhoda M, Giegerich R, Behzadi B, Steyaert JM (2009)
Alignment of minisatellite maps based on run-length encoding scheme.
Journal of Bioinformatics and Computational Biology 7(02): 287-308.
PUB | DOI | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383411
Reeder J, Giegerich R (2009)
RNA secondary structure analysis using the RNAshapes package.
Current Protocols in Bioinformatics.
PUB | DOI | PubMed | Europe PMC
 
2009 | Konferenzbeitrag | Entwurf | PUB-ID: 2383425
Steffen P, Giegerich R, Giraud M (Unpublished)
GPU Parallization of Algebraic Dynamic Programming.
In: Proceedings PPAM. .
PUB
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589458
Beckstette M, Homann R, Giegerich R, Kurtz S (2009)
Significant speedup of database searches with HMMs by search space reduction with PSSM family models.
Bioinformatics 25(24): 3251-3258.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634374
Homann R, Fleer D, Giegerich R, Rehmsmeier M (2009)
mkESA: enhanced suffix array construction tool.
Bioinformatics 25(8): 1084-1085.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383382
Abouelhoda MI, Giegerich R, Behzadi B, Steyaert JM (2008)
Alignment of Minisatellite Maps: A Minimum Spanning Tree based Approach.
In: Proceedings of the 6th Asia-Pacific Bioinformatics Conference. Series on Advances in Bioinformatics and Computational Biology, 6, 261-272.
PUB | DOI
 
2008 | Bielefelder E-Dissertation | PUB-ID: 2305281 OA
Fiedler T (01T00:00:00Z.01.1970)
The jPREdictor and its application to motif discovery, motif clustering and the prediction of Polycomb/Trithorax response elements.
Bielefeld (Germany): Bielefeld University.
PUB | PDF
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1784020 OA
Lamprecht A-L, Margaria T, Steffen B, Sczyrba A, Hartmeier S, Giegerich R (2008)
GeneFisher-P: variations of GeneFisher as processes in Bio-jETI.
BMC Bioinformatics 9(Suppl 4): S13.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1784025 OA
Herold J, Kurtz S, Giegerich R (2008)
Efficient computation of absent words in genomic sequences.
BMC Bioinformatics 9(1): 167.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 

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