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136 Publikationen

2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003355
Giegerich, R., & Hoener Zu Siederdissen, C. (2011). Semantics and Ambiguity of Stochastic RNA Family Models. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 8(2), 499-516. doi:10.1109/TCBB.2010.12
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093578
Linke, B., Giegerich, R., & Goesmann, A. (2011). Conveyor: a workflow engine for bioinformatic analyses. Bioinformatics, 27(7), 903-911. doi:10.1093/bioinformatics/btr040
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2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1893988 OA
Grond, F., Janssen, S., Schirmer, S., & Hermann, T. (2010). Browsing RNA Structures by Interactive Sonification. In R. Bresin, T. Hermann, & A. Hunt (Eds.), Proceedings of the 3rd Interactive Sonification Workshop (pp. 11-16). KTH, Stockholm, Sweden: KTH School of Computer Science and Communication (CSC).
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2906810
Bremges, A., Schirmer, S., & Giegerich, R. (2010). Fine-tuning structural RNA alignments in the twilight zone. BMC Bioinformatics, 11(1), 222. doi:10.1186/1471-2105-11-222
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Bielefelder E-Dissertation | PUB-ID: 2304195 OA
Sauthoff, G. (01T00:00:00Z.01.1970). Bellman's GAP : a 2nd generation language and system for algebraic dynamic programming. Bielefeld (Germany): Bielefeld University.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1796697
Brabrand, C., Giegerich, R., & Moller, A. (2010). Analyzing ambiguity of context-free grammars. SCIENCE OF COMPUTER PROGRAMMING, 75(3), 176-191. doi:10.1016/j.scico.2009.11.002
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2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1894008 OA
Theis, C., Janssen, S., & Giegerich, R. (2010). Prediction of RNA Secondary Structure Including Kissing Hairpin Motifs. In V. Moulton & M. Singh (Eds.), Lecture Notes in Bioinformatics: Vol. 6293. Algorithms in Bioinformatics. 10th international workshop (WABI 2010), proceedings (pp. 52-64). Berlin: Springer. doi:10.1007/978-3-642-15294-8_5
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1893946 OA
Janssen, S., & Giegerich, R. (2010). Faster computation of exact RNA shape probabilities. Bioinformatics, 26(5), 632-639. doi:10.1093/bioinformatics/btq014
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785497 OA
Schlüter, J. - P., Reinkensmeier, J., Daschkey, S., Evguenieva-Hackenberg, E., Janssen, S., Jaenicke, S., Becker, J. D., et al. (2010). A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti. BMC Genomics, 11(1), 245. doi:10.1186/1471-2164-11-245
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785512 OA
Bremges, A., Schirmer, S., & Giegerich, R. (2010). Fine-tuning structural RNA alignments in the twilight zone. BMC Bioinformatics, 11(1), 222. doi:10.1186/1471-2105-11-222
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785581 OA
Abouelhoda, M., El-Kalioby, M., & Giegerich, R. (2010). WAMI: a web server for the analysis of minisatellite maps. BMC Evolutionary Biology, 10(1), 167. doi:10.1186/1471-2148-10-167
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383365
Abouelhoda, M., Giegerich, R., Behzadi, B., & Steyaert, J. M. (2009). Alignment of minisatellite maps based on run-length encoding scheme. Journal of Bioinformatics and Computational Biology, 7(02), 287-308. doi:10.1142/S0219720009004060
PUB | DOI | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383411
Reeder, J., & Giegerich, R. (2009). RNA secondary structure analysis using the RNAshapes package. Current Protocols in Bioinformatics. doi:10.1002/0471250953.bi1208s26
PUB | DOI | PubMed | Europe PMC
 
2009 | Konferenzbeitrag | Entwurf | PUB-ID: 2383425
Steffen, P., Giegerich, R., & Giraud, M. (Unpublished). GPU Parallization of Algebraic Dynamic Programming. Proceedings PPAM
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589458
Beckstette, M., Homann, R., Giegerich, R., & Kurtz, S. (2009). Significant speedup of database searches with HMMs by search space reduction with PSSM family models. Bioinformatics, 25(24), 3251-3258. doi:10.1093/bioinformatics/btp593
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634374
Homann, R., Fleer, D., Giegerich, R., & Rehmsmeier, M. (2009). mkESA: enhanced suffix array construction tool. Bioinformatics, 25(8), 1084-1085. doi:10.1093/bioinformatics/btp112
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383382
Abouelhoda, M. I., Giegerich, R., Behzadi, B., & Steyaert, J. M. (2008). Alignment of Minisatellite Maps: A Minimum Spanning Tree based Approach. Proceedings of the 6th Asia-Pacific Bioinformatics Conference, 261-272. doi:10.1142/9781848161092_0028
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2008 | Bielefelder E-Dissertation | PUB-ID: 2305281 OA
Fiedler, T. (01T00:00:00Z.01.1970). The jPREdictor and its application to motif discovery, motif clustering and the prediction of Polycomb/Trithorax response elements. Bielefeld (Germany): Bielefeld University.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1784020 OA
Lamprecht, A. - L., Margaria, T., Steffen, B., Sczyrba, A., Hartmeier, S., & Giegerich, R. (2008). GeneFisher-P: variations of GeneFisher as processes in Bio-jETI. BMC Bioinformatics, 9(Suppl 4), S13. doi:10.1186/1471-2105-9-S4-S13
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1784025 OA
Herold, J., Kurtz, S., & Giegerich, R. (2008). Efficient computation of absent words in genomic sequences. BMC Bioinformatics, 9(1), 167. doi:10.1186/1471-2105-9-167
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