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138 Publikationen

2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941280 OA
Zhu Q, Mai U, Pfeiffer W, Janssen S, Asnicar F, Sanders JG, Belda-Ferre P, Al-Ghalith GA, Kopylova E, McDonald D, Kosciolek T, Yin JB, Huang S, Salam N, Jiao J-Y, Wu Z, Xu ZZ, Cantrell K, Yang Y, Sayyari E, Rabiee M, Morton JT, Podell S, Knights D, Li W-J, Huttenhower C, Segata N, Smarr L, Mirarab S, Knight R (2019)
Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea.
Nature Communications 10(1): 5477: 5477.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941281
Bouslimani A, da Silva R, Kosciolek T, Janssen S, Callewaert C, Amir A, Dorrestein K, Melnik AV, Zaramela LS, Kim J-N, Humphrey G, Schwartz T, Sanders K, Brennan C, Luzzatto-Knaan T, Ackermann G, McDonald D, Zengler K, Knight R, Dorrestein PC (2019)
The impact of skin care products on skin chemistry and microbiome dynamics.
BMC Biology 17(1): 47: 47.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901460
Löwes B, Chauve C, Ponty Y, Giegerich R (2017)
The BRaliBase Dent – a Tale of Benchmark Design and Interpretation.
Briefings in Bioinformatics 18(2): 306-311: bbw022.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903044
Gatter T, Giegerich R, Saule C (2016)
Integrating Pareto Optimization into Dynamic Programming.
ALGORITHMS 9(1): 12.
PUB | DOI | WoS
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917100
Nuss AM, Heroven AK, Waldmann B, Reinkensmeier J, Jarek M, Beckstette M, Dersch P (2015)
Transcriptomic Profiling of Yersinia pseudotuberculosis Reveals Reprogramming of the Crp Regulon by Temperature and Uncovers Crp as a Master Regulator of Small RNAs.
PLOS GENETICS 11(3): e1005087: 26.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905757
Giegerich R, Touzet H (2014)
Modeling Dynamic Programming Problems over Sequences and Trees with Inverse Coupled Rewrite Systems.
Algorithms 7(1): 62-144.
PUB | DOI
 
2014 | Bielefelder E-Dissertation | PUB-ID: 2682131 OA
Janssen S (2014)
Kisses, ambivalent models and more: Contributions to the analysis of RNA secondary structure.
Bielefeld: Universitätsbibliothek.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2699802
Torres-Quesada O, Reinkensmeier J, Schlueter J-P, Robledo M, Peregrina A, Giegerich R, Toro N, Becker A, Jimenez-Zurdo JI (2014)
Genome-wide profiling of Hfq-binding RNAs uncovers extensive post-transcriptional rewiring of major stress response and symbiotic regulons in Sinorhizobium meliloti.
RNA Biology 11(5): 563-579.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2681698
Sauthoff G, Giegerich R (2014)
Yield grammar analysis and product optimization in a domain-specific language for dynamic programming.
Science of Computer Programming 87: 2-22.
PUB | DOI | WoS
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2699792
Becker A, Overloeper A, Schlueter J-P, Reinkensmeier J, Robledo M, Giegerich R, Narberhaus F, Evguenieva-Hackenberg E (2014)
Riboregulation in plant-associated alpha-proteobacteria.
RNA Biology 11(5): 550-562.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2584661
Schlueter J-P, Reinkensmeier J, Barnett MJ, Lang C, Krol E, Giegerich R, Long SR, Becker A (2013)
Global mapping of transcription start sites and promoter motifs in the symbiotic a-proteobacterium Sinorhizobium meliloti 1021.
Bmc Genomics 14(1): 156: 156.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645192
Gillett A, Bergman P, Parsa R, Bremges A, Giegerich R, Jagodic M (2013)
A Silent Exonic SNP in Kdm3a Affects Nucleic Acids Structure but Does Not Regulate Experimental Autoimmune Encephalomyelitis.
Plos One 8(12): e81912: e81912.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2901275
Löwes B, Giegerich R (2013)
Avoiding Ambiguity and Assessing Uniqueness in Minisatellite Alignment.
In: German Conference on Bioinformatics 2013. Beißbarth T, Kollmar M, Leha A, Morgenstern B, Schultz A-K, Waack S, Wingender E (Eds); OpenAccess Series in Informatics (OASIcs), 34. Dagstuhl, Germany: Schloss Dagstuhl - Leibniz-Zentrum für Informatik: 110-124.
PUB | DOI
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2607289
Schirmer S, Giegerich R (2013)
Forest alignment with affine gaps and anchors, applied in RNA structure comparison.
Theoretical Computer Science 483: 51-67.
PUB | DOI | WoS
 
2012 | Sammelwerksbeitrag | PUB-ID: 2439665
Janssen S, Giegerich R (2012)
Abstract Shape Analysis of RNA.
In: RNA Bioinformatics t.b.a. Gorodkin J, Weinberg Z (Eds); 1-35.
PUB
 
2011 | Bielefelder E-Dissertation | PUB-ID: 2302459 OA
Abdul-Hak S (2011)
Analytische und empirische Untersuchungen über abstrakte Shapes von RNA-Sekundärstrukturen.
Bielefeld (Germany): Bielefeld University.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2410526 OA
Janssen S, Schudoma C, Steger G, Giegerich R (2011)
Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction.
BMC Bioinformatics 12(1): 429: 429.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2427226
Reinkensmeier J, Schlüter J-P, Giegerich R, Becker A (2011)
Conservation and Occurrence of Trans-Encoded sRNAs in the Rhizobiales.
GENES 2(4): 925-956.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383357
Giegerich R, Sauthoff G (2011)
Yield grammar analysis in the Bellman's GAP compiler.
In: Proceedings of the Eleventh Workshop on Language Descriptions, Tools and Applications (ACM). .
PUB
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383363
Schirmer S, Giegerich R (2011)
Forest Alignment with Affine Gaps and Anchors.
Combinatorial Pattern Matching: 104-117.
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