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136 Publikationen

2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901460
Löwes, B., Chauve, C., Ponty, Y., Giegerich, R.: The BRaliBase Dent – a Tale of Benchmark Design and Interpretation. Briefings in Bioinformatics. 18, 306-311 (2017).
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903044
Gatter, T., Giegerich, R., Saule, C.: Integrating Pareto Optimization into Dynamic Programming. ALGORITHMS. 9, : 12 (2016).
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917100
Nuss, A.M., Heroven, A.K., Waldmann, B., Reinkensmeier, J., Jarek, M., Beckstette, M., Dersch, P.: Transcriptomic Profiling of Yersinia pseudotuberculosis Reveals Reprogramming of the Crp Regulon by Temperature and Uncovers Crp as a Master Regulator of Small RNAs. PLOS GENETICS. 11, : 26 (2015).
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905757
Giegerich, R., Touzet, H.: Modeling Dynamic Programming Problems over Sequences and Trees with Inverse Coupled Rewrite Systems. Algorithms. 7, 62-144 (2014).
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2014 | Bielefelder E-Dissertation | PUB-ID: 2682131 OA
Janssen, S.: Kisses, ambivalent models and more: Contributions to the analysis of RNA secondary structure. Universitätsbibliothek, Bielefeld (2014).
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2699802
Torres-Quesada, O., Reinkensmeier, J., Schlueter, J.-P., Robledo, M., Peregrina, A., Giegerich, R., Toro, N., Becker, A., Jimenez-Zurdo, J.I.: Genome-wide profiling of Hfq-binding RNAs uncovers extensive post-transcriptional rewiring of major stress response and symbiotic regulons in Sinorhizobium meliloti. RNA Biology. 11, 563-579 (2014).
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2681698
Sauthoff, G., Giegerich, R.: Yield grammar analysis and product optimization in a domain-specific language for dynamic programming. Science of Computer Programming. 87, 2-22 (2014).
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2699792
Becker, A., Overloeper, A., Schlueter, J.-P., Reinkensmeier, J., Robledo, M., Giegerich, R., Narberhaus, F., Evguenieva-Hackenberg, E.: Riboregulation in plant-associated alpha-proteobacteria. RNA Biology. 11, 550-562 (2014).
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2584661
Schlueter, J.-P., Reinkensmeier, J., Barnett, M.J., Lang, C., Krol, E., Giegerich, R., Long, S.R., Becker, A.: Global mapping of transcription start sites and promoter motifs in the symbiotic a-proteobacterium Sinorhizobium meliloti 1021. Bmc Genomics. 14, 156 (2013).
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645192
Gillett, A., Bergman, P., Parsa, R., Bremges, A., Giegerich, R., Jagodic, M.: A Silent Exonic SNP in Kdm3a Affects Nucleic Acids Structure but Does Not Regulate Experimental Autoimmune Encephalomyelitis. Plos One. 8, e81912 (2013).
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2013 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2901275
Löwes, B., Giegerich, R.: Avoiding Ambiguity and Assessing Uniqueness in Minisatellite Alignment. In: Beißbarth, T., Kollmar, M., Leha, A., Morgenstern, B., Schultz, A.-K., Waack, S., and Wingender, E. (eds.) German Conference on Bioinformatics 2013. OpenAccess Series in Informatics (OASIcs). 34, p. 110-124. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, Dagstuhl, Germany (2013).
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2607289
Schirmer, S., Giegerich, R.: Forest alignment with affine gaps and anchors, applied in RNA structure comparison. Theoretical Computer Science. 483, 51-67 (2013).
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2012 | Sammelwerksbeitrag | PUB-ID: 2439665
Janssen, S., Giegerich, R.: Abstract Shape Analysis of RNA. In: Gorodkin, J. and Weinberg, Z. (eds.) RNA Bioinformatics t.b.a. p. 1-35. (2012).
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2410526 OA
Janssen, S., Schudoma, C., Steger, G., Giegerich, R.: Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction. BMC Bioinformatics. 12, 429 (2011).
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2427226
Reinkensmeier, J., Schlüter, J.-P., Giegerich, R., Becker, A.: Conservation and Occurrence of Trans-Encoded sRNAs in the Rhizobiales. GENES. 925-956 (2011).
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2011 | Bielefelder E-Dissertation | PUB-ID: 2302459 OA
Abdul-Hak, S.: Analytische und empirische Untersuchungen über abstrakte Shapes von RNA-Sekundärstrukturen. Bielefeld University, Bielefeld (Germany) (2011).
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383357
Giegerich, R., Sauthoff, G.: Yield grammar analysis in the Bellman's GAP compiler. Proceedings of the Eleventh Workshop on Language Descriptions, Tools and Applications (ACM). (2011).
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383363
Schirmer, S., Giegerich, R.: Forest Alignment with Affine Gaps and Anchors. Combinatorial Pattern Matching. 104-117 (2011).
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2310489
Sauthoff, G., Janssen, S., Giegerich, R.: Bellman's GAP: a declarative language for dynamic programming. Proceedings of the 13th international ACM SIGPLAN symposium on Principles and practices of declarative programming. p. 29-40. ACM, New York, NY, USA (2011).
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2011 | Bielefelder E-Dissertation | PUB-ID: 2474238 OA
Schirmer, S.: Comparing forests. Bielefeld University, Bielefeld (2011).
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003355
Giegerich, R., Hoener Zu Siederdissen, C.: Semantics and Ambiguity of Stochastic RNA Family Models. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 8, 499-516 (2011).
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093578
Linke, B., Giegerich, R., Goesmann, A.: Conveyor: a workflow engine for bioinformatic analyses. Bioinformatics. 27, 903-911 (2011).
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2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1893988 OA
Grond, F., Janssen, S., Schirmer, S., Hermann, T.: Browsing RNA Structures by Interactive Sonification. In: Bresin, R., Hermann, T., and Hunt, A. (eds.) Proceedings of the 3rd Interactive Sonification Workshop. p. 11-16. KTH School of Computer Science and Communication (CSC), KTH, Stockholm, Sweden (2010).
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2906810
Bremges, A., Schirmer, S., Giegerich, R.: Fine-tuning structural RNA alignments in the twilight zone. BMC Bioinformatics. 11, : 222 (2010).
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2010 | Bielefelder E-Dissertation | PUB-ID: 2304195 OA
Sauthoff, G.: Bellman's GAP : a 2nd generation language and system for algebraic dynamic programming. Bielefeld University, Bielefeld (Germany) (2010).
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1796697
Brabrand, C., Giegerich, R., Moller, A.: Analyzing ambiguity of context-free grammars. SCIENCE OF COMPUTER PROGRAMMING. 75, 176-191 (2010).
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2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1894008 OA
Theis, C., Janssen, S., Giegerich, R.: Prediction of RNA Secondary Structure Including Kissing Hairpin Motifs. In: Moulton, V. and Singh, M. (eds.) Algorithms in Bioinformatics. 10th international workshop (WABI 2010), proceedings. Lecture Notes in Bioinformatics. 6293, p. 52-64. Springer, Berlin (2010).
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1893946 OA
Janssen, S., Giegerich, R.: Faster computation of exact RNA shape probabilities. Bioinformatics. 26, 632-639 (2010).
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785497 OA
Schlüter, J.-P., Reinkensmeier, J., Daschkey, S., Evguenieva-Hackenberg, E., Janssen, S., Jaenicke, S., Becker, J.D., Giegerich, R., Becker, A.: A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti. BMC Genomics. 11, : 245 (2010).
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785512 OA
Bremges, A., Schirmer, S., Giegerich, R.: Fine-tuning structural RNA alignments in the twilight zone. BMC Bioinformatics. 11, 222 (2010).
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785581 OA
Abouelhoda, M., El-Kalioby, M., Giegerich, R.: WAMI: a web server for the analysis of minisatellite maps. BMC Evolutionary Biology. 10, 167 (2010).
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383365
Abouelhoda, M., Giegerich, R., Behzadi, B., Steyaert, J.M.: Alignment of minisatellite maps based on run-length encoding scheme. Journal of Bioinformatics and Computational Biology. 7, 287-308 (2009).
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383411
Reeder, J., Giegerich, R.: RNA secondary structure analysis using the RNAshapes package. Current Protocols in Bioinformatics. (2009).
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2009 | Konferenzbeitrag | Entwurf | PUB-ID: 2383425
Steffen, P., Giegerich, R., Giraud, M.: GPU Parallization of Algebraic Dynamic Programming. Proceedings PPAM. (Unpublished).
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589458
Beckstette, M., Homann, R., Giegerich, R., Kurtz, S.: Significant speedup of database searches with HMMs by search space reduction with PSSM family models. Bioinformatics. 25, 3251-3258 (2009).
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634374
Homann, R., Fleer, D., Giegerich, R., Rehmsmeier, M.: mkESA: enhanced suffix array construction tool. Bioinformatics. 25, 1084-1085 (2009).
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383382
Abouelhoda, M.I., Giegerich, R., Behzadi, B., Steyaert, J.M.: Alignment of Minisatellite Maps: A Minimum Spanning Tree based Approach. Proceedings of the 6th Asia-Pacific Bioinformatics Conference. Series on Advances in Bioinformatics and Computational Biology, 6. p. 261-272. (2008).
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2008 | Bielefelder E-Dissertation | PUB-ID: 2305281 OA
Fiedler, T.: The jPREdictor and its application to motif discovery, motif clustering and the prediction of Polycomb/Trithorax response elements. Bielefeld University, Bielefeld (Germany) (2008).
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1784020 OA
Lamprecht, A.-L., Margaria, T., Steffen, B., Sczyrba, A., Hartmeier, S., Giegerich, R.: GeneFisher-P: variations of GeneFisher as processes in Bio-jETI. BMC Bioinformatics. 9, S13 (2008).
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1784025 OA
Herold, J., Kurtz, S., Giegerich, R.: Efficient computation of absent words in genomic sequences. BMC Bioinformatics. 9, 167 (2008).
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2008 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1587496
Gkogkoglou, K., Mentz, A., Albersmeier, A., Kalinowski, J., Giegerich, R.: Looking for non-coding RNAs in Corynebacterium glutamicum. FEBS JOURNAL. 275, 153 (2008).
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588303
Sczyrba, A., Konermann, S., Giegerich, R.: Two interactive bioinformatics courses at the bielefeld university bioinformatics server. BRIEFINGS IN BIOINFORMATICS. 9, 243-249 (2008).
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588308
Giegerich, R., Brazma, A., Jonassen, I., Ukkonen, E., Vingron, M.: The BREW workshop series: a stimulating experience in PhD education. Briefings in Bioinformatics. 9, 250-253 (2008).
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783357 OA
Theis, C., Reeder, J., Giegerich, R.: KnotInFrame: prediction of –1 ribosomal frameshift events. Nucleic Acids Research. 36, 6013-6020 (2008).
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1893917 OA
Janssen, S., Reeder, J., Giegerich, R.: Shape based indexing for faster search of RNA family databases. BMC Bioinformatics. 9, 131 (2008).
PUB | Dateien verfügbar | DOI | WoS | PubMed | Europe PMC
 
2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383428
Brabrand, C., Giegerich, R., Moeller, A.: Analyzing Ambiguity of Context-Free Grammars. In: Holub, J. and Žďárek, J. (eds.) Implementation and Application of Automata. 12th International Conference, CIAA 2007, July 16-18, 2007, Revised Selected Papers. Lecture Notes in Computer Science, 4783. Springer (2007).
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2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383462
Hartmeier, S., Krüger, J., Giegerich, R.: Webservices and Workflows on the Bielefeld Bioinformatics Server: Practices and Problems. Proceedings. (2007).
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2007 | Bielefelder E-Dissertation | PUB-ID: 2305575 OA
Beckstette, M.: Index-based algorithms for motif search and their integration in a system for differential genome analysis. Bielefeld University, Bielefeld (Germany) (2007).
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2007 | Bielefelder Masterarbeit | PUB-ID: 2306578 OA
Sauthoff, G.: Java-Backend für den ADP-Compiler. Bielefeld University, Bielefeld (Germany) (2007).
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2007 | Bielefelder E-Dissertation | PUB-ID: 2306594 OA
Reeder, J.: Algorithms for RNA secondary structure analysis : prediction of pseudoknots and the consensus shapes approach. Bielefeld University, Bielefeld (Germany) (2007).
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2007 | Bielefelder E-Dissertation | PUB-ID: 2306215 OA
Möllmann, E.: Computergestützte Informationssysteme im Museum. Bielefeld University, Bielefeld (Germany) (2007).
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2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1593132
Reeder, J., Reeder, J., Giegerich, R.: Locomotif: from graphical motif description to RNA motif search. Bioinformatics. 23, I392-I400 (2007).
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587974 OA
Reeder, J., Steffen, P., Giegerich, R.: pknotsRG: RNA pseudoknot folding including near-optimal structures and sliding windows. NUCLEIC ACIDS RESEARCH. 35, W320-W324 (2007).
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1597065
Baake, M., Grimm, U., Giegerich, R.: Surprises in approximating Levenshtein distances. JOURNAL OF THEORETICAL BIOLOGY. 243, 279-282 (2006).
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2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383464
Giegerich, R., Steffen, P.: Challenges in the Compilation of a Domain Specific Language for Dynamic Programming. Proceedings of te 2006 ACM Symposium on Applied Computing. (2006).
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2006 | Bielefelder E-Dissertation | PUB-ID: 2304348 OA
Steffen, P.: Compiling a domain specific language for dynamic programming. Bielefeld University, Bielefeld (Germany) (2006).
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1902179
Gerlach, W., Giegerich, R.: GUUGle: a utility for fast exact matching under RNA complementary rules including G-U base pairing. Bioinformatics. 22, 762-764 (2006).
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1946336
Höchsmann, T., Höchsmann, M., Giegerich, R.: Thermodynamic matchers: strengthening the significance of RNA folding energies. Comput Syst Bioinformatics Conf. (2006).
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2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383518
Reeder, J., Giegerich, R.: A graphical programming system for molecular motif search. Proceedings of the 5th International Conference on Generative Programming and Component Engineering. p. 131-140. ACM Press (2006).
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2006 | Bielefelder E-Dissertation | PUB-ID: 2303538 OA
Sczyrba, A.: Genome analysis based on EST collections : a clustering pipeline and a database on Xenopus laevis. Bielefeld University, Bielefeld (Germany) (2006).
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773864 OA
Beckstette, M., Homann, R., Giegerich, R., Kurtz, S.: Fast index based algorithms and software for matching position specific scoring matrices. BMC Bioinformatics. 7, 389 (2006).
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773871 OA
Seibel, P.N., Krüger, J., Hartmeier, S., Schwarzer, K., Löwenthal, K., Mersch, H., Dandekar, T., Giegerich, R.: XML schemas for common bioinformatic data types and their application in workflow systems. BMC Bioinformatics. 7, 490 (2006).
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1600726
Malde, K., Giegerich, R.: Calculating PSSM probabilities with lazy dynamic programming. Jornal of Functional Programming. 16, 75-81 (2006).
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773640 OA
Steffen, P., Giegerich, R.: Correction: Versatile and declarative dynamic programming using pair algebras. BMC Bioinformatics. 7, 214 (2006).
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1597805
Steffen, P., Giegerich, R.: Table design in dynamic programming. INFORMATION AND COMPUTATION. 204, 1325-1345 (2006).
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1600421
Steffen, P., Voss, B., Rehmsmeier, M., Reeder, J., Giegerich, R.: RNAshapes: an integrated RNA analysis package based on abstract shapes. Bioinformatics. 22, 500-503 (2006).
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773637 OA
Voß, B., Giegerich, R., Rehmsmeier, M.: Complete probabilistic analysis of RNA shapes. BMC Biology. 4, 5 (2006).
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2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1598807
Reeder, J., Höchsmann, M., Rehmsmeier, M., Voss, B., Giegerich, R.: Beyond Mfold: recent advances in RNA bioinformatics. JOURNAL OF BIOTECHNOLOGY. 124, 41-55 (2006).
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602431
Reeder, J., Giegerich, R.: Consensus shapes: an alternative to the Sankoff algorithm for RNA consensus structure prediction. BIOINFORMATICS. 21, 3516-3523 (2005).
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773595 OA
Reeder, J., Steffen, P., Giegerich, R.: Effective ambiguity checking in biosequence analysis. BMC Bioinformatics. 6, 153 (2005).
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773598 OA
Steffen, P., Giegerich, R.: Versatile and declarative dynamic programming using pair algebras. BMC Bioinformatics. 6, 224 (2005).
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773613 OA
Sczyrba, A., Beckstette, M., Brivanlou, A.H., Giegerich, R., Altmann, C.R.: XenDB: Full length cDNA prediction and cross species mapping in Xenopus laevis. BMC Genomics. 6, 123 (2005).
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383529
Beckstette, M., Mailänder, J.T., Marhöfer, R.J., Sczyrba, A., Ohlebusch, E., Giegerich, R., Selzer, P.M.: Genlight: Interactive high-throughput sequence analysis and comparative genomics. Journal of Integrative Bioinformatics. 1, 0008 (2004).
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2004 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383543
Beckstette, M., Strothmann, D., Homann, R., Giegerich, R., Kurtz, S.: PoSSuMsearch: Fast and Sensitive Matching of Position Specific Scoring Matrices using Enhanced Suffix Arrays. Proceedings of the German Conference on Bioinformatics. p. 53-64. GI, Lecture Notes in Informatics (2004).
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2004 | Bielefelder E-Dissertation | PUB-ID: 2304811 OA
Voß, B.: Advanced tools for RNA secondary structure analysis. Bielefeld University, Bielefeld (Germany) (2004).
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2004 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383561
Sczyrba, A., Beckstette, M., Giegerich, R., Altman, C.: Identification of 10,500 Xenopus laevis Full Length Clones through EST Clustering and Sequence Analysis. Proceedings of the German Conference on Bioinformatics. GI, Lecture Notes in Informatics (2004).
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2004 | Konferenzband | Veröffentlicht | PUB-ID: 1918823
Giegerich, R., Stoye, J. eds: Proceedings of the German Conference on Bioinformatics, GCB 2004. Lecture Notes in Informatics. P-53, (2004).
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2004 | Bielefelder Masterarbeit | PUB-ID: 2306150 OA
Mersch, H.: BiBiWS : ein Framework für die Entwicklung asynchroner WebServices auf dem BiBiServ. Bielefeld University, Bielefeld (Germany) (2004).
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606377
Rehmsmeier, M., Steffen, P., Höchsmann, M., Giegerich, R.: Fast and effective prediction of microRNA/target duplexes. RNA-A PUBLICATION OF THE RNA SOCIETY. 10, 1507-1517 (2004).
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606822
Choudhuri, J.V., Schleiermacher, C., Kurtz, S., Giegerich, R.: GenAlyzer: interactive visualization of sequence similarities between entire genomes. BIOINFORMATICS. 20, 1964-1965 (2004).
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1607394 OA
Krüger, J., Sczyrba, A., Kurtz, S., Giegerich, R.: e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences. NUCLEIC ACIDS RESEARCH. 32, W301-W304 (2004).
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1607419
Voss, B., Meyer, C., Giegerich, R.: Evaluating the predictability of conformational switching in RNA. Bioinformatics. 20, 1573-1582 (2004).
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1607656
Giegerich, R., Meyer, C., Steffen, P.: A discipline of dynamic programming over sequence data. SCIENCE OF COMPUTER PROGRAMMING. 51, 215-263 (2004).
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606393 OA
Giegerich, R., Voss, B., Rehmsmeier, M.: Abstract shapes of RNA. Nucleic Acids Research. 32, 4843-4851 (2004).
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773758 OA
Reeder, J., Giegerich, R.: Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics. BMC Bioinformatics. 5, 104 (2004).
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773747 OA
Gardner, P.P., Giegerich, R.: A comprehensive comparison of comparative RNA structure prediction approaches. BMC Bioinformatics. 5, 140 (2004).
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1600293
Höchsmann, M., Voss, B., Giegerich, R.: Pure multiple RNA secondary structure alignments: A progressive profile approach. IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATIOCS. 1, 53-62 (2004).
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383602
Dress, A., Giegerich, R., Grünewald, S., Wagner, H.: Fibonacci-Cayley-numbers and Repetition Pattern in Genomic DNA. Annals of Combinatorics. 259-279 (2003).
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2003 | Bielefelder E-Dissertation | PUB-ID: 2303583 OA
Evers, D.J.: RNA folding via algebraic dynamic programming. Bielefeld University, Bielefeld (Germany) (2003).
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2003 | Bielefelder E-Dissertation | PUB-ID: 2304461 OA
Choudhuri, J.V.: Bioinformatics approaches to large scale genome comparison, including the identification of conserved noncoding regions. Bielefeld University, Bielefeld (Germany) (2003).
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1918949
Giegerich, R., Stoye, J.: Finden, fast ohne zu suchen: Indexstrukturen in der Bioinformatik. Forschung an der Universität Bielefeld. 26, 63-68 (2003).
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610397 OA
Giegerich, R., Kurtz, S., Stoye, J.: Efficient implementation of lazy suffix trees. SOFTWARE-PRACTICE & EXPERIENCE. 33, 1035-1049 (2003).
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773844 OA
Sczyrba, A., Krüger, J., Mersch, H., Kurtz, S., Giegerich, R.: RNA-related tools on the Bielefeld Bioinformatics Server. Nucleic Acids Research. 31, 3767-3770 (2003).
PUB | Dateien verfügbar | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773880 OA
Meyer, F., Goesmann, A., McHardy, A.C., Bartels, D., Bekel, T., Clausen, J., Kalinowski, J., Linke, B., Rupp, O., Giegerich, R., Pühler, A.: GenDB - an open source genome annotation system for prokaryote genomes. Nucleic Acids Research. 31, 2187-2195 (2003).
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1666680
Höchsmann, M., Töller, T., Giegerich, R., Kurtz, S.: Local similarity in RNA secondary structures. Proc IEEE Comput Soc Bioinform Conf. 2, (2003).
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2002 | Bielefelder E-Dissertation | PUB-ID: 2305597 OA
Krause, A.: Large scale clustering of protein sequences. Bielefeld University, Bielefeld (Germany) (2002).
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2002 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383608
Giegerich, R., Meyer, C.: Algebraic Dynamic Programming. Algebraic Methodology and Software Technology. p. 349-364. Springer (2002).
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2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1614870
Meyer, C., Giegerich, R.: Matching and significance evaluation of combined sequence-structure motifs in RNA. ZEITSCHRIFT FÜR PHYSIKALISCHE CHEMIE-INTERNATIONAL JOURNAL OF RESEARCH IN PHYSICAL CHEMISTRY & CHEMICAL PHYSICS. 216, 193-216 (2002).
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2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1615366
Goesmann, A., Haubrock, M., Meyer, F., Kalinowski, J., Giegerich, R.: PathFinder: reconstruction and dynamic visualization of metabolic pathways. BIOINFORMATICS. 18, 124-129 (2002).
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2002 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1612812
Giegerich, R., Steffen, P.: Implementing algebraic dynamic programming in the functional and the imperative programming paradigm. MATHEMATICS OF PROGRAM CONSTRUCTION. Lecture Notes in Computer Science. 2386, p. 1-20. SPRINGER-VERLAG BERLIN (2002).
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