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546 Publikationen
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2939194
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Mayer, G., Quast, C., Felden, J., Lange, M., Prinz, M., Pühler, A., Lawerenz, C., et al. (2019). A generally applicable lightweight method for calculating a value structure for tools and services in bioinformatics infrastructure projects. BRIEFINGS IN BIOINFORMATICS, 20(4), 1215-1221. doi:10.1093/bib/bbx140
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2938413 
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| Dateien verfügbar | DOI | Download (ext.) | PubMed | Europe PMC
| EBI - ENA Project
Schaffert, L., Schneiker-Bekel, S., Dymek, S., Droste, J., Persicke, M., Busche, T., Brandt, D., et al. (2019). Essentiality of the Maltase AmlE in Maltose Utilization and Its Transcriptional Regulation by the Repressor AmlR in the Acarbose-Producing Bacterium Actinoplanes sp. SE50/110. Frontiers in Microbiology, 10, 2448. doi:10.3389/fmicb.2019.02448
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936839
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Nelkner, J., Tejerizo, G. T., Hassa, J., Lin, T. W., Witte, J., Verwaaijen, B., Winkler, A., et al. (2019). Genetic Potential of the Biocontrol Agent Pseudomonas brassicacearum (Formerly P. trivialis) 3Re2-7 Unraveled by Genome Sequencing and Mining, Comparative Genomics and Transcriptomics. Genes, 10(8), 601. doi:10.3390/genes10080601
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936439
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| Dateien verfügbar | DOI | WoS | PubMed | Europe PMC
Schaffert, L., März, C., Burkhardt, L., Droste, J., Brandt, D., Busche, T., Rosen, W., et al. (2019). Evaluation of vector systems and promoters for overexpression of the acarbose biosynthesis gene acbC in Actinoplanes sp. SE50/110. Microbial Cell Factories, 18, 114. doi:10.1186/s12934-019-1162-5
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935556
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Verwaaijen, B., Wibberg, D., Winkler, A., Zrenner, R., Bednarz, H., Niehaus, K., Grosch, R., et al. (2019). A comprehensive analysis of the Lactuca sativa, L. transcriptome during different stages of the compatible interaction with Rhizoctonia solani. Scientific Reports, 9, 7221. doi:10.1038/s41598-019-43706-5
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935899
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López, J. L., Lozano, M. J., Lagares, A., Fabre, M. L., Draghi, W. O., Del Papa, M. F., Pistorio, M., et al. (2019). Codon Usage Heterogeneity in the Multipartite Prokaryote Genome. Selection-Based Coding Bias Associated with Gene Location, Expression Level, and Ancestry. mBio, 10(3), e00505-19. doi:10.1128/mbio.00505-19
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936223
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Belmann, P., Fischer, B., Krüger, J., Procházka, M., Rasche, H., Prinz, M., Hanussek, M., et al. (2019). de.NBI Cloud federation through ELIXIR AAI. F1000Research, 8, 842. doi:10.12688/f1000research.19013.1
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935923
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Nelkner, J., Henke, C., Lin, T. W., Pätzold, W., Hassa, J., Jaenicke, S., Grosch, R., et al. (2019). Effect of Long-Term Farming Practices on Agricultural Soil Microbiome Members Represented by Metagenomically Assembled Genomes (MAGs) and Their Predicted Plant-Beneficial Genes. Genes, 10(6), 424. doi:10.3390/genes10060424
2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2934570
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Castellani, L. G., Nilsson, J. F., Wibberg, D., Schlüter, A., Pühler, A., Brom, S., Pistorio, M., et al. (2019). Insight into the structure, function and conjugative transfer of pLPU83a, an accessory plasmid of Rhizobium favelukesii LPU83. Plasmid. doi:10.1016/j.plasmid.2019.03.004
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920160
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Arnold, W., Grotjohann, N., Pühler, A., Röllke, K., & Selbitschka, W. (2018). Die CeBiT ec Schülerakademie „Synthetische Biologie/Biotechnologie “– Begabtenförderung in einem zukunftsträchtigen Forschungsfeld. ABB-Information. Jahresheft, 2017
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916929
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Stolze, Y., Bremges, A., Maus, I., Pühler, A., Sczyrba, A., & Schlüter, A. (2018). Targeted in situ metatranscriptomics for selected taxa from mesophilic and thermophilic biogas plants. Microbial Biotechnology, 11(4), 667-679. doi:10.1111/1751-7915.12982
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920169
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Salto, I. P., Torres Tejerizo, G., Wibberg, D., Pühler, A., Schlüter, A., & Pistorio, M. (2018). Comparative genomic analysis of Acinetobacter spp. plasmids originating from clinical settings and environmental habitats. Scientific Reports, 8(1), 7783. doi:10.1038/s41598-018-26180-3
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920170
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Hassa, J., Maus, I., Off, S., Pühler, A., Scherer, P., Klocke, M., & Schlüter, A. (2018). Metagenome, metatranscriptome, and metaproteome approaches unraveled compositions and functional relationships of microbial communities residing in biogas plants. Applied Microbiology and Biotechnology, 102(12), 5045-5063. doi:10.1007/s00253-018-8976-7
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920168
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Tomazetto, G., Hahnke, S., Wibberg, D., Pühler, A., Klocke, M., & Schlüter, A. (2018). Proteiniphilum saccharofermentans str. M3/6 T isolated from a laboratory biogas reactor is versatile in polysaccharide and oligopeptide utilization as deduced from genome-based metabolic reconstructions. Biotechnology Reports, 18, e00254. doi:10.1016/j.btre.2018.e00254
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930510
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Alkhateeb, R., Vorhölter, F. - J., Steffens, T., Rückert, C., Ortseifen, V., Hublik, G., Niehaus, K., et al. (2018). Comparative transcription profiling of two fermentation cultures of Xanthomonas campestris pv. campestris B100 sampled in the growth and in the stationary phase. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, 102(15), 6613-6625. doi:10.1007/s00253-018-9106-2
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920750
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Maus, I., Rumming, M., Bergmann, I., Heeg, K., Pohl, M., Nettmann, E., Jaenicke, S., et al. (2018). Characterization of Bathyarchaeota genomes assembled from metagenomes of biofilms residing in mesophilic and thermophilic biogas reactors. Biotechnology for Biofuels, 11, 167. doi:10.1186/s13068-018-1162-4
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920173
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Wibberg, D., Salto, I. P., Eikmeyer, F. G., Maus, I., Winkler, A., Nordmann, P., Pühler, A., et al. (2018). Complete Genome Sequencing of Acinetobacter baumannii Strain K50 Discloses the Large Conjugative Plasmid pK50a Encoding Carbapenemase OXA-23 and Extended-Spectrum β-Lactamase GES-11. Antimicrobial Agents and Chemotherapy, 62(5), e00212-18. doi:10.1128/aac.00212-18
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917037
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Verwaaijen, B., Wibberg, D., Nelkner, J., Gordin, M., Rupp, O., Winkler, A., Bremges, A., et al. (2018). Assembly of the Lactuca sativa, L. cv. Tizian draft genome sequence reveals differences within major resistance complex 1 as compared to the cv. Salinas reference genome. JOURNAL OF BIOTECHNOLOGY, 267, 12-18. doi:10.1016/j.jbiotec.2017.12.021
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2915516
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Maus, I., Bremges, A., Stolze, Y., Hahnke, S., Cibis, K. G., Koeck, D. E., Kim, Y. S., et al. (2017). Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes. Biotechnology for Biofuels, 10(1), 264. doi:10.1186/s13068-017-0947-1
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912114
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Verwaaijen, B., Wibberg, D., Kröber, M., Winkler, A., Zrenner, R., Bednarz, H., Niehaus, K., et al. (2017). The Rhizoctonia solani AG1-IB (isolate 7/3/14) transcriptome during interaction with the host plant lettuce (Lactuca sativa L.). PLOS ONE, 12(5), e0177278. doi:10.1371/journal.pone.0177278
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913116
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Wolf, T., Droste, J., Gren, T., Ortseifen, V., Schneiker-Bekel, S., Zemke, T., Pühler, A., et al. (2017). The MalR type regulator AcrC is a transcriptional repressor of acarbose biosynthetic genes in Actinoplanes sp. SE50/110. BMC Genomics, 18, 562. doi:10.1186/s12864-017-3941-x
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2910369
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Maus, I., Kim, Y. S., Wibberg, D., Stolze, Y., Off, S., Antonczyk, S., Pühler, A., et al. (2017). Biphasic Study to Characterize Agricultural Biogas Plants by High-Throughput 16S rRNA Gene Amplicon Sequencing and Microscopic Analysis. Journal of Microbiology and Biotechnology, 27(2), 321-334. doi:10.4014/jmb.1605.05083
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908419
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Torres Tejerizo, G. A., Wibberg, D., Winkler, A., Ormeño-Orrillo, E., Martínez-Romero, E., Niehaus, K., Pühler, A., et al. (2017). Genome Sequence of the Symbiotic Type Strain Rhizobium tibeticum CCBAU85039T. Genome Announcements, 5(4), e01513-16. doi:10.1128/genomea.01513-16
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916528
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Wolf, T., Schneiker-Bekel, S., Neshat, A., Ortseifen, V., Wibberg, D., Zemke, T., Pühler, A., et al. (2017). Genome improvement of the acarbose producer Actinoplanes sp SE50/110 and annotation refinement based on RNA-seq analysis. JOURNAL OF BIOTECHNOLOGY, 251, 112-123. doi:10.1016/j.jbiotec.2017.04.013
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911997
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Omar Draghi, W., Florencia Del Papa, M., Barsch, A., Albicoro, F. J., Lozano, M. J., Pühler, A., Niehaus, K., et al. (2017). A metabolomic approach to characterize the acid-tolerance response in Sinorhizobium meliloti. METABOLOMICS, 13(6), 71. doi:10.1007/s11306-017-1210-2
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916470
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Tomazetto, G., Hahnke, S., Langer, T., Wibberg, D., Blom, J., Maus, I., Pühler, A., et al. (2017). The completely annotated genome and comparative genomics of the Peptoniphilaceae bacterium str. ING2-D1G, a novel acidogenic bacterium isolated from a mesophilic biogas reactor. Journal of Biotechnology, 257, 178-186. doi:10.1016/j.jbiotec.2017.05.027
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2910373
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Bartholomäus, A., Wibberg, D., Winkler, A., Pühler, A., Schlüter, A., & Varrelmann, M. (2017). Identification of a novel mycovirus isolated from Rhizoctonia solani (AG 2-2 IV) provides further information about genome plasticity within the order Tymovirales. Archives of Virology, 162(2), 555-559. doi:10.1007/s00705-016-3085-3
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916406
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Lasek, R., Dziewit, L., Ciok, A., Decewicz, P., Romaniuk, K., Jedrys, Z., Wibberg, D., et al. (2017). Genome content, metabolic pathways and biotechnological potential of the psychrophilic Arctic bacterium Psychrobacter sp DAB_AL43B, a source and a host of novel Psychrobacter-specific vectors. Journal of Biotechnology, 263, 64-74. doi:10.1016/j.jbiotec.2017.09.011
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916435
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Czarnecki, J., Dziewit, L., Puzyna, M., Prochwicz, E., Tudek, A., Wibberg, D., Schlüter, A., et al. (2017). Lifestyle-determining extrachromosomal replicon pAMV1 and its contribution to the carbon metabolism of the methylotrophic bacterium Paracoccus aminovorans JCM 7685. Environmental Microbiology, 19(11), 4536-4550. doi:10.1111/1462-2920.13901
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914538
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Ortseifen, V., Kalinowski, J., Pühler, A., & Rückert, C. (2017). The complete genome sequence of the actinobacterium Streptomyces glaucescens GLA.O (DSM 40922) carrying gene clusters for the biosynthesis of tetracenomycin C, 5`-hydroxy streptomycin, and acarbose. J Biotechnol, 262, 84-88. doi:10.1016/j.jbiotec.2017.09.008
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916490
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Wibberg, D., Genzel, F., Verwaaijen, B., Blom, J., Rupp, O., Goesmann, A., Zrenner, R., et al. (2017). Draft genome sequence of the potato pathogen Rhizoctonia solani AG3-PT isolate Ben3. Archives of Microbiology, 199(7), 1065-1068. doi:10.1007/s00203-017-1394-x
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911777
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Torres Tejerizo, G. A., Kim, Y. S., Maus, I., Wibberg, D., Winkler, A., Off, S., Pühler, A., et al. (2017). Genome sequence of Methanobacterium congolense strain Buetzberg, a hydrogenotrophic, methanogenic archaeon, isolated from a mesophilic industrial-scale biogas plant utilizing bio-waste. Journal of Biotechnology, 247, 1-5. doi:10.1016/j.jbiotec.2017.02.015
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911462
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Alkhateeb, R., Rückert, C., Rupp, O., Pucker, B., Hublik, G., Wibberg, D., Niehaus, K., et al. (2017). Refined annotation of the complete genome of the phytopathogenic and xanthan producing Xanthomonas campestris pv. campestris strain B100 based on RNA sequence data. Journal of Biotechnology, 253, 55-61. doi:10.1016/j.jbiotec.2017.05.009
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907676
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Jaenicke, S., Bunk, B., Wibberg, D., Spröer, C., Hersemann, L., Blom, J., Winkler, A., et al. (2016). Complete Genome Sequence of the Barley Pathogen Xanthomonas translucens pv. translucens DSM 18974 T (ATCC 19319 T). Genome Announcements, 4(6), e01334-16. doi:10.1128/genomea.01334-16
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904970
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Maus, I., Wibberg, D., Winkler, A., Pühler, A., Schnürer, A., & Schlüter, A. (2016). Complete Genome Sequence of the MethanogenMethanoculleus bourgensisBA1 Isolated from a Biogas Reactor. Genome Announcements, 4(3), e00568-16. doi:10.1128/genomea.00568-16
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904978
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Koeck, D. E., Maus, I., Wibberg, D., Winkler, A., Zverlov, V. V., Liebl, W., Pühler, A., et al. (2016). Draft Genome Sequence of Propionisporasp. Strain 2/2-37, a New Xylan-Degrading Bacterium Isolated from a Mesophilic Biogas Reactor. Genome Announcements, 4(3), e00609-16. doi:10.1128/genomea.00609-16
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904993
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Koeck, D. E., Maus, I., Wibberg, D., Winkler, A., Zverlov, V. V., Liebl, W., Pühler, A., et al. (2016). Complete Genome Sequence of Herbinix luporumSD1D, a New Cellulose-Degrading Bacterium Isolated from a Thermophilic Biogas Reactor. Genome Announcements, 4(4), e00687-16. doi:10.1128/genomea.00687-16
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907431
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Bartholomaeus, A., Wibberg, D., Winkler, A., Pühler, A., Schlüter, A., & Varrelmann, M. (2016). Deep Sequencing Analysis Reveals the Mycoviral Diversity of the Virome of an Avirulent Isolate of Rhizoctonia solani AG-2-2 IV. PLOS ONE, 11(11), e0165965. doi:10.1371/journal.pone.0165965
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904815
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Stolze, Y., Bremges, A., Rumming, M., Henke, C., Maus, I., Pühler, A., Sczyrba, A., et al. (2016). Identification and genome reconstruction of abundant distinct taxa in microbiomes from one thermophilic and three mesophilic production-scale biogas plants. Biotechnology for Biofuels, 9, 156. doi:10.1186/s13068-016-0565-3
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903660
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Steffens, T., Vorhölter, F. - J., Giampa, M., Hublik, G., Pühler, A., & Niehaus, K. (2016). The influence of a modified lipopolysaccharide O-antigen on the biosynthesis of xanthan in Xanthomonas campestris pv. campestris B100. BMC Microbiology, 16, 93. doi:10.1186/s12866-016-0710-y
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917144
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Wibberg, D., Andersson, L., Tzelepis, G., Rupp, O., Blom, J., Jelonek, L., Pühler, A., et al. (2016). Genome analysis of the sugar beet pathogen Rhizoctonia solani AG2-2IIIB revealed high numbers in secreted proteins and cell wall degrading enzymes. BMC Genomics, 17, 245. doi:10.1186/s12864-016-2561-1
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2906715
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Koeck, D. E., Wibberg, D., Maus, I., Winkler, A., Albersmeier, A., Zverlov, V. V., Liebl, W., et al. (2016). Corrigendum to "Complete genome sequence of the cellulolytic thermophile Ruminoclostridium cellulosi wild-type strain DG5 isolated from a thermophilic biogas plant (J. Biotechnol. 188 (2014) 136–137)")". Journal of Biotechnology, 237, 35. doi:10.1016/j.jbiotec.2016.08.020
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905630
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Gren, T., Ortseifen, V., Wibberg, D., Schneiker-Bekel, S., Bednarz, H., Niehaus, K., Zemke, T., et al. (2016). Genetic engineering in Actinoplanes sp SE50/110-development of an intergeneric conjugation system for the introduction of actinophage-based integrative vectors. Journal of Biotechnology, 232, 79-88. doi:10.1016/j.jbiotec.2016.05.012
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908260
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Torres Tejerizo, G. A., Antonio Rogel, M., Ormeno-Orrillo, E., Julia Althabegoiti, M., Fernanda Nilsson, J., Niehaus, K., Schlüter, A., et al. (2016). Rhizobium favelukesii sp nov., isolated from the root nodules of alfalfa (Medicago sativa L). INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 66, 4451-4457. doi:10.1099/ijsem.0.001373
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905122
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Draghi, W. O., Del Papa, M. F., Hellweg, C., Watt, S. A., Watt, T. F., Barsch, A., Lozano, M. J., et al. (2016). A consolidated analysis of the physiologic and molecular responses induced under acid stress in the legume-symbiont model-soil bacterium Sinorhizobium meliloti. SCIENTIFIC REPORTS, 6, 29278
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917142
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Wibberg, D., Andersson, L., Rupp, O., Goesmann, A., Pühler, A., Varrelmann, M., Dixelius, C., et al. (2016). Draft genome sequence of the sugar beet pathogen Rhizoctonia solani AG2-2IIIB strain BBA69670. Journal of Biotechnology, 222, 11-12. doi:10.1016/j.jbiotec.2016.02.001
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904691
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Martini, M. C., Wibberg, D., Lozano, M., Torres Tejerizo, G., Albicoro, F. J., Jaenicke, S., van Elsas, J. D., et al. (2016). Genomics of high molecular weight plasmids isolated from an on-farm biopurification system. Scientific Reports, 6, 28284. doi:10.1038/srep28284
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903489
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Maus, I., Cibis, K. G., Bremges, A., Stolze, Y., Wibberg, D., Tomazetto, G., Blom, J., et al. (2016). Genomic characterization of Defluviitoga tunisiensis L3, a key hydrolytic bacterium in a thermophilic biogas plant and its abundance as determined by metagenome fragment recruitment. Journal of Biotechnology, 232, 50-60. doi:10.1016/j.jbiotec.2016.05.001
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903302
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Wibberg, D., Bremges, A., Dammann-Kalinowski, T., Maus, I., Igeño, M. I., Vogelsang, R., König, C., et al. (2016). Finished genome sequence and methylome of the cyanide-degrading Pseudomonas pseudoalcaligenes strain CECT5344 as resolved by single-molecule real-time sequencing. Journal of Biotechnology, 232, 61-68. doi:10.1016/j.jbiotec.2016.04.008
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2902126
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Liebe, S., Wibberg, D., Winkler, A., Pühler, A., Schlüter, A., & Varrelmann, M. (2016). Taxonomic analysis of the microbial community in stored sugar beets using high-throughput sequencing of different marker genes. FEMS Microbiology Ecology, 92(2), fiw004. doi:10.1093/femsec/fiw004