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547 Publikationen

2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2717539
Maus, I., Stantscheff, R., Wibberg, D., Stolze, Y., Winkler, A., Pühler, A., König, H., and Schlüter, A. (2014). Complete genome sequence of the methanogenic neotype strain Methanobacterium formicicum MFT. Journal of Biotechnology 192, 40-41.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2717558
Koeck, D. E., Wibberg, D., Maus, I., Winkler, A., Albersmeier, A., Zverlov, V. V., Pühler, A., Schwarz, W. H., Liebl, W., and Schlüter, A. (2014). First draft genome sequence of the amylolytic Bacillus thermoamylovorans wild-type strain 1A1 isolated from a thermophilic biogas plant. Journal of Biotechnology 192, 154-155.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2710114
Townsend, P. D., Jungwirth, B., Pojer, F., Bußmann, M., Money, V. A., Cole, S. T., Pühler, A., Tauch, A., Bott, M., Cann, M. J., et al. (2014). The Crystal Structures of Apo and cAMP-Bound GlxR from Corynebacterium glutamicum Reveal Structural and Dynamic Changes upon cAMP Binding in CRP/FNR Family Transcription Factors. PloS one 9, 113265.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2710431
Wendler, S., Ortseifen, V., Persicke, M., Klein, A., Neshat, A., Niehaus, K., Schneiker-Bekel, S., Walter, F., Wehmeier, U. F., Kalinowski, J., et al. (2014). Carbon source dependent biosynthesis of acarviose metabolites in Actinoplanes sp SE50/110. Journal of Biotechnology 191, 113-120.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2707731
Koeck, D. E., Wibberg, D., Maus, I., Winkler, A., Albersmeier, A., Zverlov, V. V., Liebl, W., Pühler, A., Schwarz, W. H., and Schlüter, A. (2014). Complete genome sequence of the cellulolytic thermophile Ruminoclostridium cellulosi wild-type strain DG5 isolated from a thermophilic biogas plant. Journal of Biotechnology 188, 136-137.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676049
Schlüter, A., Nordmann, P., Bonnin, R. A., Millemann, Y., Eikmeyer, F. G., Wibberg, D., Pühler, A., and Poirel, L. (2014). IncH-type plasmid harboring the blaCTX-M-15, blaDHA-1, and qnrB4 genes recovered from animal isolates. Antimicrobial Agents and Chemotherapy 58, 3768-3773.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2662055
Wibberg, D., Luque-Almagro, V. M., Igeño, M. I., Bremges, A., Roldán, M. D., Merchán, F., Sáez, L. P., Guijo, M. I., Manso, M. I., Macías, D., et al. (2014). Complete genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344. Journal of biotechnology 175, 67-68.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2631969 OA
Mentz, A., Neshat, A., Pfeifer-Sancar, K., Pühler, A., Rückert, C., and Kalinowski, J. (2013). Comprehensive discovery and characterization of small RNAs in Corynebacterium glutamicum ATCC 13032. BMC Genomics 14, 714.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2605193 OA
Eikmeyer, F. G., Rademacher, A., Hanreich, A., Hennig, M., Jaenicke, S., Maus, I., Wibberg, D., Zakrzewski, M., Pühler, A., Klocke, M., et al. (2013). Detailed analysis of metagenome datasets obtained from biogas-producing microbial communities residing in biogas reactors does not indicate the presence of putative pathogenic microorganisms. Biotechnology for Biofuels 6:49.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548270
Jungwirth, B., Sala, C., Kohl, T. A., Uplekar, S., Baumbach, J., Cole, S. T., Pühler, A., and Tauch, A. (2013). High-resolution detection of DNA binding sites of the global transcriptional regulator GlxR in Corynebacterium glutamicum. Microbiology 159, 12-22.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2549908
Wibberg, D., Jelonek, L., Rupp, O., Kröber, M., Eikmeyer, F. G., Goesmann, A., Hartmann, A., Borriss, R., Grosch, R., Pühler, A., et al. (2013). Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14. Journal of Biotechnology 167, 142-155.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2633427
Wibberg, D., Blom, J., Rückert, C., Winkler, A., Albersmeier, A., Pühler, A., Schlüter, A., and Scharf, B. E. (2013). Draft Genome Sequence of Sinorhizobium meliloti RU11/001, a model organism for flagellum structure, motility and chemotaxis. Journal of Biotechnology 168, 731-733.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2632946
Köhler, K. A. K., Rückert, C., Schatschneider, S., Vorhölter, F. - J., Szczepanowski, R., Blank, L. M., Niehaus, K., Goesmann, A., Pühler, A., Kalinowski, J., et al. (2013). Complete genome sequence of Pseudomonas sp. strain VLB120 a solvent tolerant, styrene degrading bacterium, isolated from forest soil. Journal of Biotechnology 168, 729-730.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2614906
Wendler, S., Hürtgen, D., Kalinowski, J., Klein, A., Niehaus, K., Schulte, F., Schwientek, P., Wehlmann, H., Wehmeier, U. F., and Pühler, A. (2013). The cytosolic and extracellular proteomes of Actinoplanes sp. SE50/110 led to the identification of gene products involved in acarbose metabolism. Journal of Biotechnology 167, 178-189.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2615581
Brinkrolf, K., Rupp, O., Laux, H., Kollin, F., Ernst, W., Linke, B., Kofler, R., Romand, S., Hesse, F., Budach, W. E., et al. (2013). Chinese hamster genome sequenced from sorted chromosomes. Nature Biotechnology 31, 694-695.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645247
Maus, I., Wibberg, D., Stantscheff, R., Cibis, K., Eikmeyer, F. G., König, H., Pühler, A., and Schlüter, A. (2013). Complete genome sequence of the hydrogenotrophic Archaeon Methanobacterium sp Mb1 isolated from a production-scale biogas plant. Journal of Biotechnology 168, 734-736.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2605230
Hanreich, A., Schimpf, U., Zakrzewski, M., Schlüter, A., Benndorf, D., Heyer, R., Rapp, E., Pühler, A., Reichl, U., and Klocke, M. (2013). Metagenome and metaproteome analyses of microbial communities in mesophilic biogas-producing anaerobic batch fermentations indicate concerted plant carbohydrate degradation. Systematic and Applied Microbiology 36, 330-338.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2565642
Dagan, T., Roettger, M., Stucken, K., Landan, G., Koch, R., Major, P., Gould, S. B., Goremykin, V. V., Rippka, R., de Marsac, N. T., et al. (2013). Genomes of Stigonematalean Cyanobacteria (Subsection V) and the Evolution of Oxygenic Photosynthesis from Prokaryotes to Plastids. Genome Biology And Evolution 5, 31-44.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2605244
Schatschneider, S., Persicke, M., Watt, T., Hublik, G., Pühler, A., Niehaus, K., and Vorhölter, F. - J. (2013). Establishment, in silico analysis, and experimental verification of a large-scale metabolic network of the xanthan producing Xanthomonas campestris pv. campestris strain B100. Journal of Biotechnology 167, 123-134.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2631956
Rückert, C., Szczepanowski, R., Albersmeier, A., Goesmann, A., Iftime, D., Musiol, E. M., Blin, K., Wohlleben, W., Pühler, A., Kalinowski, J., et al. (2013). Complete genome sequence of the kirromycin producer Streptomyces collinus Tü 365 consisting of a linear chromosome and two linear plasmids. Journal of Biotechnology 168, 739-740.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2635526
Koeck, D. E., Wibberg, D., Koellmeier, T., Blom, J., Jaenicke, S., Winkler, A., Albersmeier, A., Zverlov, V. V., Pühler, A., Schwarz, W. H., et al. (2013). Draft genome sequence of the cellulolytic Clostridium thermocellum wild-type strain BC1 playing a role in cellulosic biomass degradation. Journal of Biotechnology 168, 62-63.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2557779
Weidner, S., Baumgarth, B., Göttfert, M., Jaenicke, S., Pühler, A., Schneiker-Bekel, S., Serrania, J., Szczepanowski, R., and Becker, A. (2013). Genome Sequence of Sinorhizobium meliloti Rm41. Genome Announcements 1, e00013-12.
PUB | DOI | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2614207
Eikmeyer, F. G., Köfinger, P., Poschenel, A., Jünemann, S., Zakrzewski, M., Heinl, S., Mayrhuber, E., Grabherr, R., Pühler, A., Schwab, H., et al. (2013). Metagenome analyses reveal the influence of the inoculant Lactobacillus buchneri CD034 on the microbial community involved in grass silaging. Journal of Biotechnology 167, 334-343.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2557080
Bonnin, R. A., Poirel, L., Nordmann, P., Eikmeyer, F. G., Wibberg, D., Pühler, A., and Schlüter, A. (2013). Complete sequence of broad-host-range plasmid pNOR-2000 harbouring the metallo-beta-lactamase gene blaVIM-2 from Pseudomonas aeruginosa. Journal of Antimicrobial Chemotherapy 68, 1060-1065.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548236
Schwientek, P., Wendler, S., Neshat, A., Eirich, C., Rückert, C., Klein, A., Wehmeier, U. F., Kalinowski, J., Stoye, J., and Pühler, A. (2013). Comparative RNA-sequencing of the acarbose producer Actinoplanes sp. SE50/110 cultivated in different growth media. Journal of Biotechnology 167, 166-177.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548286
Luque-Almagro, V. M., Acera, F., Igeño, M. I., Wibberg, D., Roldán, M. D., Sáez, L. P., Hennig, M., Quesada, A., Huertas, M. J., Blom, J., et al. (2013). Draft whole genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344. Environmental Microbiology 15, 253-270.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2555355
Plassmeier, J., Busche, T., Molck, S., Persicke, M., Pühler, A., Rückert, C., and Kalinowski, J. (2013). A propionate-inducible expression system based on the Corynebacterium glutamicum prpD2 promoter and PrpR activator and its application for the redirection of amino acid biosynthesis pathways. Journal of Biotechnology 163, 225-232.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2546244
Wibberg, D., Szczepanowski, R., Eikmeyer, F. G., Pühler, A., and Schlüter, A. (2013). The IncF plasmid pRSB225 isolated from a municipal wastewater treatment plant’s on-site preflooder combining antibiotic resistance and putative virulence functions is highly related to virulence plasmids identified in pathogenic E. coli isolates. Plasmid 69, 127-137.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529202
Zakrzewski, M., Bekel, T., Ander, C., Pühler, A., Rupp, O., Stoye, J., Schlüter, A., and Goesmann, A. (2013). MetaSAMS - A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets. Journal of Biotechnology 167, 156-165.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2553286
Jungbauer, A., Scheper, T., and Pühler, A. (2012). Current research and future perspectives of applied biotechnology. Journal of Biotechnology 162, 355.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2484618
Zakrzewski, M., Goesmann, A., Jaenicke, S., Jünemann, S., Eikmeyer, F. G., Szczepanowski, R., Al-Soud, W. A., Sørensen, S., Pühler, A., and Schlüter, A. (2012). Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing. Journal of Biotechnology 158, 248-258.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2473849
Weidner, S., Becker, A., Bonilla, I., Jaenicke, S., Lloret, J., Margaret, I., Pühler, A., Ruiz-Sainz, J. E., Schneiker-Bekel, S., Szczepanowski, R., et al. (2012). Genome Sequence of the Soybean Symbiont Sinorhizobium fredii HH103. Journal of Bacteriology 194, 1617-1618.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2537690 OA
Vorhölter, F. - J., Wiggerich, H. - G., Scheidle, H., Sidhu, V. K., Mrozek, K., Küster, H., Pühler, A., and Niehaus, K. (2012). Involvement of bacterial TonB-dependent signaling in the generation of an oligogalacturonide damage-associated molecular pattern from plant cell walls exposed to Xanthomonas campestris pv. campestris pectate lyases. BMC Microbiology 12, 239.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2472279
Eikmeyer, F. G., Hadiati, A., Szczepanowski, R., Wibberg, D., Schneiker-Bekel, S., Rogers, L. M., Brown, C. B., Top, E. M., Pühler, A., and Schlüter, A. (2012). The complete genome sequences of four new IncN plasmids from wastewater treatment plant effluent provide new insights into IncN plasmid diversity and evolution. Plasmid 68, 13-24.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490535
Heinl, S., Wibberg, D., Eikmeyer, F. G., Szczepanowski, R., Blom, J., Linke, B., Goesmann, A., Grabherr, R., Schwab, H., Pühler, A., et al. (2012). Insights into the completely annotated genome of Lactobacillus buchneri CD034, a strain isolated from stable grass silage. Journal of Biotechnology 161, 153-166.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2486060 OA
Schwientek, P., Szczepanowski, R., Rückert, C., Kalinowski, J., Klein, A., Selber, K., Wehmeier, U. F., Stoye, J., and Pühler, A. (2012). The complete genome sequence of the acarbose producer Actinoplanes sp. SE50/110. BMC Genomics 13:112.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2471681
Rademacher, A., Zakrzewski, M., Schlüter, A., Schonberg, M., Szczepanowski, R., Goesmann, A., Pühler, A., and Klocke, M. (2012). Characterization of microbial biofilms in a thermophilic biogas system by high-throughput metagenome sequencing. FEMS Microbiology Ecology 79, 785-799.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501307
Pietruszka, J., Pühler, A., and Schembecker, G. (2012). Research on industrial biotechnology within the CLIB-Graduate Cluster - Part I. Journal of Biotechnology 159, 121-122.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501364
Meleady, P., Hoffrogge, R., Henry, M., Rupp, O., Bort, J. H., Clarke, C., Brinkrolf, K., Kelly, S., Müller, B., Doolan, P., et al. (2012). Utilization and evaluation of CHO-specific sequence databases for mass spectrometry based proteomics. Biotechnology and Bioengineering 109, 1386-1394.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2478526
Hackl, M., Jadhav, V., Jakobi, T., Rupp, O., Brinkrolf, K., Goesmann, A., Pühler, A., Noll, T., Borth, N., and Grillari, J. (2012). Computational identification of microRNA gene loci and precursor microRNA sequences in CHO cell lines. Journal of Biotechnology 158, 151-155.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501774
Wendisch, V. F., and Pühler, A. (2012). Microbes and industrial biotechnology. Journal of Biotechnology 158, 157-158.
PUB | DOI | WoS
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500966
Hain, T., Ghai, R., Billion, A., Kuenne, C. T., Steinweg, C., Izar, B., Mohamed, W., Mraheil, M., Domann, E., Schaffrath, S., et al. (2012). Comparative genomics and transcriptomics of lineages I, II, and III strains of Listeria monocytogenes. BMC Genomics 13, 144.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2544774
Schneider, J., Andrea, H., Blom, J., Jaenicke, S., Rückert, C., Schorsch, C., Szczepanowski, R., Farwick, M., Goesmann, A., Pühler, A., et al. (2012). Draft Genome Sequence of Wickerhamomyces ciferrii NRRL Y-1031 F-60-10. Eukaryotic Cell 11, 1582-1583.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526269 OA
Strobel, T., Al-Dilaimi, A., Blom, J., Gessner, A., Kalinowski, J., Luzhetska, M., Pühler, A., Szczepanowski, R., Bechthold, A., and Rückert, C. (2012). Complete genome sequence of Saccharothrix espanaensis DSM 44229T and comparison to the other completely sequenced Pseudonocardiaceae. BMC Genomics 13, 465.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529610
Schork, S., Schlüter, A., Blom, J., Schneiker-Bekel, S., Pühler, A., Goesmann, A., Frosch, M., and Schoen, C. (2012). Genome Sequence of a Neisseria meningitidis Capsule Null Locus Strain from the Clonal Complex of Sequence Type 198. Journal of Bacteriology 194, 5144-5145.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526298
Maus, I., Wibberg, D., Stantscheff, R., Eikmeyer, F. G., Seffner, A., Boelter, J., Szczepanowski, R., Blom, J., Jaenicke, S., König, H., et al. (2012). Complete Genome Sequence of the Hydrogenotrophic, Methanogenic Archaeon Methanoculleus bourgensis Strain MS2T, Isolated from a Sewage Sludge Digester. Journal of Bacteriology 194, 5487-5488.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2513297
Pauling, J., Rottger, R., Neuner, A., Salgado, H., Collado-Vides, J., Kalaghatgi, P., Azevedo, V., Tauch, A., Pühler, A., and Baumbach, J. (2012). On the trail of EHEC/EAEC-unraveling the gene regulatory networks of human pathogenic Escherichia coli bacteria. Integrative Biology 4, 728-733.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354746
Schwientek, P., Szczepanowski, R., Rückert, C., Stoye, J., and Pühler, A. (2011). Sequencing of high G + C microbial genomes using the ultrafast pyrosequencing technology. Journal of Biotechnology 155, 68-77.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | PUB-ID: 2401477
Mattiasson, B., and Pühler, A. (2011). Towards sustainable biotechnology. Journal of Biotechnology 152, 113.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375634
Pothier, J. F., Vorhölter, F. - J., Blom, J., Goesmann, A., Pühler, A., Smits, T. H., and Duffy, B. (2011). The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis. FEMS Microbiology Letters 323, 52-60.
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